RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 CASC2Q6XLA1 102 aa3.59□□□□□ -1.83
NUP88-205ENST00000572809 Q8N9L7 120 aa3.59□□□□□ -1.83
NUP88-205ENST00000572809 UBL5Q9BZL1 73 aa3.58□□□□□ -1.84
NUP88-205ENST00000572809 LINC00846Q9NV44 126 aa3.58□□□□□ -1.84
NUP88-205ENST00000572809 PRO0461Q9UI25 63 aa3.58□□□□□ -1.84
NUP88-205ENST00000572809 HCG22E2RYF7 251 aa3.57□□□□□ -1.84
NUP88-205ENST00000572809 K7EP34 96 aa3.57□□□□□ -1.84
NUP88-205ENST00000572809 H1FX-AS1Q4G0G2 97 aa3.57□□□□□ -1.84
NUP88-205ENST00000572809 C7orf65Q6ZTY9 151 aa3.56□□□□□ -1.84
NUP88-205ENST00000572809 OBSCNQ5VST9 7968 aa3.55□□□□□ -1.84
NUP88-205ENST00000572809 SEC61GP60059 68 aa3.54□□□□□ -1.84
NUP88-205ENST00000572809 GTF2H5Q6ZYL4 71 aa3.54□□□□□ -1.84
NUP88-205ENST00000572809 F8W1H4 67 aa3.53□□□□□ -1.84
NUP88-205ENST00000572809 C4orf26Q17RF5 130 aa3.52□□□□□ -1.85
NUP88-205ENST00000572809 USH2AO75445 5202 aa3.51□□□□□ -1.85
NUP88-205ENST00000572809 ETDBQ3ZM63 59 aa3.5□□□□□ -1.85
NUP88-205ENST00000572809 TP53AIP1Q9HCN2 124 aa3.49□□□□□ -1.85
NUP88-205ENST00000572809 SSPOA2VEC9 5147 aa3.47□□□□□ -1.85
NUP88-205ENST00000572809 C1orf64Q8NEQ6 169 aa3.46□□□□□ -1.86
NUP88-205ENST00000572809 ACYP1P07311 99 aa3.44□□□□□ -1.86
NUP88-205ENST00000572809 KRTAP19-6Q3LI70 58 aa3.44□□□□□ -1.86
NUP88-205ENST00000572809 C5orf47Q569G3 176 aa3.44□□□□□ -1.86
NUP88-205ENST00000572809 LCE1FQ5T754 118 aa3.43□□□□□ -1.86
NUP88-205ENST00000572809 CSAG1Q6PB30 78 aa3.43□□□□□ -1.86
NUP88-205ENST00000572809 S4R3F8 94 aa3.43□□□□□ -1.86
NUP88-205ENST00000572809 KRTAP10-12P60413 245 aa3.42□□□□□ -1.86
NUP88-205ENST00000572809 KRTAP4-3Q9BYR4 195 aa3.42□□□□□ -1.86
NUP88-205ENST00000572809 CYP4F30PQ9H0H9 118 aa3.42□□□□□ -1.86
NUP88-205ENST00000572809 FCGBPQ9Y6R7 5405 aaPredicted RBP3.41□□□□□ -1.86
NUP88-205ENST00000572809 FAM236AA0A1B0GUQ0 79 aa3.41□□□□□ -1.86
NUP88-205ENST00000572809 FAM236BA0A1B0GV22 79 aa3.41□□□□□ -1.86
NUP88-205ENST00000572809 LCA10Q71F78 164 aa3.41□□□□□ -1.86
NUP88-205ENST00000572809 TRAV22A0A0B4J277 110 aa3.39□□□□□ -1.87
NUP88-205ENST00000572809 FAM240AA0A1B0GVK7 77 aa3.39□□□□□ -1.87
NUP88-205ENST00000572809 HIST1H4AP62805 103 aaKnown RBP3.39□□□□□ -1.87
NUP88-205ENST00000572809 LOC101927531A0A1B0GV80 90 aa3.38□□□□□ -1.87
NUP88-205ENST00000572809 ATP5EP2Q5VTU8 51 aa3.38□□□□□ -1.87
NUP88-205ENST00000572809 UQCRQO14949 82 aa3.37□□□□□ -1.87
NUP88-205ENST00000572809 H0Y9P7 68 aa3.35□□□□□ -1.87
NUP88-205ENST00000572809 ATOX1O00244 68 aa3.35□□□□□ -1.87
NUP88-205ENST00000572809 LINC00643Q86TS7 51 aa3.35□□□□□ -1.87
NUP88-205ENST00000572809 MACF1Q9UPN3 7388 aaKnown RBP3.35□□□□□ -1.87
NUP88-205ENST00000572809 A0A087WVE0 104 aa3.34□□□□□ -1.87
NUP88-205ENST00000572809 SPRR2GQ9BYE4 73 aa3.34□□□□□ -1.87
NUP88-205ENST00000572809 KLKP1Q107X0 134 aa3.33□□□□□ -1.88
NUP88-205ENST00000572809 Q5VV11 94 aa3.33□□□□□ -1.88
NUP88-205ENST00000572809 MT1BP07438 61 aa3.32□□□□□ -1.88
NUP88-205ENST00000572809 KRTAP19-8Q3LI54 63 aa3.32□□□□□ -1.88
NUP88-205ENST00000572809 SYNE2Q8WXH0 6885 aaKnown RBP3.32□□□□□ -1.88
NUP88-205ENST00000572809 A0A1B0GV90 55 aa3.31□□□□□ -1.88
NUP88-205ENST00000572809 LINC00208Q96KT6 92 aa3.31□□□□□ -1.88
NUP88-205ENST00000572809 A6NN06 94 aa3.3□□□□□ -1.88
NUP88-205ENST00000572809 NDUFC1O43677 76 aa3.3□□□□□ -1.88
NUP88-205ENST00000572809 IMUPQ9GZP8 106 aa3.3□□□□□ -1.88
NUP88-205ENST00000572809 CRIPTQ9P021 101 aa3.3□□□□□ -1.88
NUP88-205ENST00000572809 A8MU10 97 aa3.29□□□□□ -1.88
NUP88-205ENST00000572809 A8MUN3 132 aa3.29□□□□□ -1.88
NUP88-205ENST00000572809 KRTAP6-3Q3LI67 103 aa3.29□□□□□ -1.88
NUP88-205ENST00000572809 KRTAP5-2Q701N4 177 aa3.29□□□□□ -1.88
NUP88-205ENST00000572809 MP68P56378 58 aa3.28□□□□□ -1.88
NUP88-205ENST00000572809 CAMK2N1Q7Z7J9 78 aa3.28□□□□□ -1.88
NUP88-205ENST00000572809 H0YAA0 97 aa3.26□□□□□ -1.89
NUP88-205ENST00000572809 J3QR89 54 aa3.26□□□□□ -1.89
NUP88-205ENST00000572809 SCGB1A1P11684 91 aa3.24□□□□□ -1.89
NUP88-205ENST00000572809 ADM2Q7Z4H4 148 aa3.24□□□□□ -1.89
NUP88-205ENST00000572809 H3BPC8 53 aa3.23□□□□□ -1.89
NUP88-205ENST00000572809 LCE3CQ5T5A8 94 aa3.2□□□□□ -1.9
NUP88-205ENST00000572809 DMAC1Q96GE9 116 aa3.18□□□□□ -1.9
NUP88-205ENST00000572809 PLAC4Q8WY50 150 aa3.16□□□□□ -1.9
NUP88-205ENST00000572809 R4GN34 69 aa3.16□□□□□ -1.9
NUP88-205ENST00000572809 P0C880 135 aa3.15□□□□□ -1.91
NUP88-205ENST00000572809 C20orf197Q8N268 126 aa3.15□□□□□ -1.91
NUP88-205ENST00000572809 ACYP2P14621 99 aa3.14□□□□□ -1.91
NUP88-205ENST00000572809 PRO2289Q9P1D8 64 aa3.14□□□□□ -1.91
NUP88-205ENST00000572809 TRAV7A0A075B6U4 112 aa3.13□□□□□ -1.91
NUP88-205ENST00000572809 K7ERU9 68 aa3.13□□□□□ -1.91
NUP88-205ENST00000572809 MT-ATP8P03928 68 aa3.13□□□□□ -1.91
NUP88-205ENST00000572809 SMIM20Q8N5G0 67 aa3.13□□□□□ -1.91
NUP88-205ENST00000572809 M0QZ58 72 aa3.12□□□□□ -1.91
NUP88-205ENST00000572809 LCE3AQ5TA76 89 aa3.11□□□□□ -1.91
NUP88-205ENST00000572809 MT1XP80297 61 aa3.1□□□□□ -1.91
NUP88-205ENST00000572809 LINC01554Q52M75 96 aa3.09□□□□□ -1.91
NUP88-205ENST00000572809 SPTSSBQ8NFR3 76 aa3.09□□□□□ -1.91
NUP88-205ENST00000572809 NEBP20929 6669 aa3.08□□□□□ -1.92
NUP88-205ENST00000572809 CHKB-CPT1BH3BT56 60 aa3.06□□□□□ -1.92
NUP88-205ENST00000572809 SNURFQ9Y675 71 aa3.06□□□□□ -1.92
NUP88-205ENST00000572809 KRTAP12-2P59991 146 aa3.04□□□□□ -1.92
NUP88-205ENST00000572809 KRTAP20-1Q3LI63 56 aa3.04□□□□□ -1.92
NUP88-205ENST00000572809 KRTAP8-1Q8IUC2 63 aa3.03□□□□□ -1.92
NUP88-205ENST00000572809 SPANXA2-OT1Q8N9U9 137 aa3.03□□□□□ -1.92
NUP88-205ENST00000572809 SPRR2FQ96RM1 72 aa3.03□□□□□ -1.92
NUP88-205ENST00000572809 MUC12Q9UKN1 5478 aa3.03□□□□□ -1.93
NUP88-205ENST00000572809 SERP2Q8N6R1 65 aa3.02□□□□□ -1.93
NUP88-205ENST00000572809 KMT2DO14686 5537 aa3□□□□□ -1.93
NUP88-205ENST00000572809 SMIM26A0A096LP01 95 aa2.99□□□□□ -1.93
NUP88-205ENST00000572809 SPRR2EP22531 72 aa2.99□□□□□ -1.93
NUP88-205ENST00000572809 SPRR2BP35325 72 aa2.99□□□□□ -1.93
NUP88-205ENST00000572809 SPRR2AP35326 72 aa2.99□□□□□ -1.93
NUP88-205ENST00000572809 KRTAP2-3P0C7H8 128 aa2.98□□□□□ -1.93
NUP88-205ENST00000572809 KRTAP2-4Q9BYR9 128 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms