RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KRTAP9-9Q9BYP9 154 aa5.09□□□□□ -1.59
VPS53-207ENST00000570510 KRTAP9-4Q9BYQ2 154 aa5.09□□□□□ -1.59
VPS53-207ENST00000570510 LINC00643Q86TS7 51 aa5.08□□□□□ -1.6
VPS53-207ENST00000570510 FAM236AA0A1B0GUQ0 79 aa5.07□□□□□ -1.6
VPS53-207ENST00000570510 FAM236BA0A1B0GV22 79 aa5.07□□□□□ -1.6
VPS53-207ENST00000570510 J3QR89 54 aa5.07□□□□□ -1.6
VPS53-207ENST00000570510 KRTAP2-2Q9BYT5 123 aa5.06□□□□□ -1.6
VPS53-207ENST00000570510 KRTAP2-1Q9BYU5 128 aa5.06□□□□□ -1.6
VPS53-207ENST00000570510 SPRR2EP22531 72 aa5.05□□□□□ -1.6
VPS53-207ENST00000570510 SPRR2BP35325 72 aa5.05□□□□□ -1.6
VPS53-207ENST00000570510 SPRR2AP35326 72 aa5.05□□□□□ -1.6
VPS53-207ENST00000570510 IMUPQ9GZP8 106 aa5.05□□□□□ -1.6
VPS53-207ENST00000570510 KRTAP10-5P60370 271 aa5.04□□□□□ -1.6
VPS53-207ENST00000570510 LOC101927531A0A1B0GV80 90 aa5.03□□□□□ -1.6
VPS53-207ENST00000570510 ATOX1O00244 68 aa5.03□□□□□ -1.6
VPS53-207ENST00000570510 KRTAP19-4Q3LI73 84 aa5.03□□□□□ -1.6
VPS53-207ENST00000570510 TRAV22A0A0B4J277 110 aa5.02□□□□□ -1.61
VPS53-207ENST00000570510 UQCRQO14949 82 aa5.02□□□□□ -1.61
VPS53-207ENST00000570510 A0A1B0GV90 55 aa5.01□□□□□ -1.61
VPS53-207ENST00000570510 MT1BP07438 61 aa5.01□□□□□ -1.61
VPS53-207ENST00000570510 SPRR2FQ96RM1 72 aa5.01□□□□□ -1.61
VPS53-207ENST00000570510 KRTAP4-8A0A0G2JLE6 195 aa4.99□□□□□ -1.61
VPS53-207ENST00000570510 HIST1H4AP62805 103 aaKnown RBP4.99□□□□□ -1.61
VPS53-207ENST00000570510 C4orf26Q17RF5 130 aa4.98□□□□□ -1.61
VPS53-207ENST00000570510 CYP4F30PQ9H0H9 118 aa4.98□□□□□ -1.61
VPS53-207ENST00000570510 KRTAP23-1A1A580 65 aa4.96□□□□□ -1.62
VPS53-207ENST00000570510 C1orf64Q8NEQ6 169 aa4.96□□□□□ -1.62
VPS53-207ENST00000570510 KRTAP19-8Q3LI54 63 aa4.93□□□□□ -1.62
VPS53-207ENST00000570510 CSAG1Q6PB30 78 aa4.93□□□□□ -1.62
VPS53-207ENST00000570510 A8MUN3 132 aa4.92□□□□□ -1.62
VPS53-207ENST00000570510 H3BPC8 53 aa4.92□□□□□ -1.62
VPS53-207ENST00000570510 KRTAP3-1Q9BYR8 98 aa4.92□□□□□ -1.62
VPS53-207ENST00000570510 S4R3F8 94 aa4.92□□□□□ -1.62
VPS53-207ENST00000570510 C5orf47Q569G3 176 aa4.91□□□□□ -1.62
VPS53-207ENST00000570510 SPRR2GQ9BYE4 73 aa4.91□□□□□ -1.62
VPS53-207ENST00000570510 H0Y9P7 68 aa4.9□□□□□ -1.63
VPS53-207ENST00000570510 SPRR2DP22532 72 aa4.9□□□□□ -1.63
VPS53-207ENST00000570510 MP68P56378 58 aa4.9□□□□□ -1.63
VPS53-207ENST00000570510 OCR1Q9BZK8 76 aa4.89□□□□□ -1.63
VPS53-207ENST00000570510 GPR98Q8WXG9 6306 aa4.88□□□□□ -1.63
VPS53-207ENST00000570510 A0A087WVE0 104 aa4.88□□□□□ -1.63
VPS53-207ENST00000570510 K7ERU9 68 aa4.88□□□□□ -1.63
VPS53-207ENST00000570510 LCA10Q71F78 164 aa4.85□□□□□ -1.63
VPS53-207ENST00000570510 LCE1DQ5T752 114 aa4.84□□□□□ -1.63
VPS53-207ENST00000570510 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
VPS53-207ENST00000570510 KRTAP8-1Q8IUC2 63 aa4.84□□□□□ -1.63
VPS53-207ENST00000570510 SMIM20Q8N5G0 67 aa4.84□□□□□ -1.63
VPS53-207ENST00000570510 SCGB1A1P11684 91 aa4.83□□□□□ -1.64
VPS53-207ENST00000570510 LINC00208Q96KT6 92 aa4.83□□□□□ -1.64
VPS53-207ENST00000570510 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
VPS53-207ENST00000570510 H0YAA0 97 aa4.81□□□□□ -1.64
VPS53-207ENST00000570510 CRIPTQ9P021 101 aa4.81□□□□□ -1.64
VPS53-207ENST00000570510 NDUFC1O43677 76 aa4.8□□□□□ -1.64
VPS53-207ENST00000570510 KLKP1Q107X0 134 aa4.79□□□□□ -1.64
VPS53-207ENST00000570510 PRO2289Q9P1D8 64 aa4.78□□□□□ -1.64
VPS53-207ENST00000570510 TRAV7A0A075B6U4 112 aa4.74□□□□□ -1.65
VPS53-207ENST00000570510 DMAC1Q96GE9 116 aa4.73□□□□□ -1.65
VPS53-207ENST00000570510 MT-ATP8P03928 68 aa4.72□□□□□ -1.65
VPS53-207ENST00000570510 KRTAP4-9Q9BYQ8 210 aa4.71□□□□□ -1.66
VPS53-207ENST00000570510 LCE4AQ5TA78 99 aa4.68□□□□□ -1.66
VPS53-207ENST00000570510 C20orf197Q8N268 126 aa4.68□□□□□ -1.66
VPS53-207ENST00000570510 ACYP2P14621 99 aa4.66□□□□□ -1.66
VPS53-207ENST00000570510 SPTSSBQ8NFR3 76 aa4.64□□□□□ -1.67
VPS53-207ENST00000570510 DSTQ03001 7570 aaKnown RBP4.64□□□□□ -1.67
VPS53-207ENST00000570510 PCP4P48539 62 aa4.62□□□□□ -1.67
VPS53-207ENST00000570510 SERP2Q8N6R1 65 aa4.62□□□□□ -1.67
VPS53-207ENST00000570510 SPANXA2-OT1Q8N9U9 137 aa4.62□□□□□ -1.67
VPS53-207ENST00000570510 PLAC4Q8WY50 150 aa4.62□□□□□ -1.67
VPS53-207ENST00000570510 KRTAP4-2Q9BYR5 136 aa4.62□□□□□ -1.67
VPS53-207ENST00000570510 ADM2Q7Z4H4 148 aa4.6□□□□□ -1.67
VPS53-207ENST00000570510 KRTAP12-2P59991 146 aa4.59□□□□□ -1.67
VPS53-207ENST00000570510 MT1XP80297 61 aa4.59□□□□□ -1.67
VPS53-207ENST00000570510 R4GN34 69 aa4.54□□□□□ -1.68
VPS53-207ENST00000570510 KRTAP4-11Q9BYQ6 195 aa4.53□□□□□ -1.68
VPS53-207ENST00000570510 CHKB-CPT1BH3BT56 60 aa4.52□□□□□ -1.69
VPS53-207ENST00000570510 SNURFQ9Y675 71 aa4.51□□□□□ -1.69
VPS53-207ENST00000570510 COX7CP15954 63 aa4.49□□□□□ -1.69
VPS53-207ENST00000570510 P0C880 135 aa4.48□□□□□ -1.69
VPS53-207ENST00000570510 M0QZ58 72 aa4.47□□□□□ -1.69
VPS53-207ENST00000570510 LCE5AQ5TCM9 118 aa4.46□□□□□ -1.7
VPS53-207ENST00000570510 A0A0A0MQY5 61 aa4.4□□□□□ -1.71
VPS53-207ENST00000570510 KRTAP10-7P60409 375 aaPredicted RBP4.39□□□□□ -1.71
VPS53-207ENST00000570510 H7BZZ5 65 aa4.38□□□□□ -1.71
VPS53-207ENST00000570510 COA5Q86WW8 74 aa4.37□□□□□ -1.71
VPS53-207ENST00000570510 SEC61GP60059 68 aa4.36□□□□□ -1.71
VPS53-207ENST00000570510 KRTAP10-12P60413 245 aa4.36□□□□□ -1.71
VPS53-207ENST00000570510 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
VPS53-207ENST00000570510 LINC01554Q52M75 96 aa4.34□□□□□ -1.71
VPS53-207ENST00000570510 ANAPC13Q9BS18 74 aa4.34□□□□□ -1.71
VPS53-207ENST00000570510 HMCN1Q96RW7 5635 aa4.34□□□□□ -1.72
VPS53-207ENST00000570510 MT4P47944 62 aa4.33□□□□□ -1.72
VPS53-207ENST00000570510 SERP1Q9Y6X1 66 aa4.33□□□□□ -1.72
VPS53-207ENST00000570510 ATP5EP56381 51 aaPredicted RBP4.31□□□□□ -1.72
VPS53-207ENST00000570510 AHNAK2Q8IVF2 5795 aa4.29□□□□□ -1.72
VPS53-207ENST00000570510 KRTAP5-10Q6L8G5 202 aa4.29□□□□□ -1.72
VPS53-207ENST00000570510 CYSTM1Q9H1C7 97 aa4.25□□□□□ -1.73
VPS53-207ENST00000570510 A0A1B0GU33 70 aa4.22□□□□□ -1.73
VPS53-207ENST00000570510 SPRR5A0A1B0GTR4 108 aa4.21□□□□□ -1.74
VPS53-207ENST00000570510 KRTAP13-4Q3LI77 160 aa4.2□□□□□ -1.74
VPS53-207ENST00000570510 KRTAP5-7Q6L8G8 165 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 750.5 ms