RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PCP4P48539 62 aa4.85□□□□□ -1.63
VPS39-208ENST00000564994 A0A087WVE0 104 aa4.84□□□□□ -1.63
VPS39-208ENST00000564994 SCGB1A1P11684 91 aa4.84□□□□□ -1.63
VPS39-208ENST00000564994 Q5VV11 94 aa4.84□□□□□ -1.63
VPS39-208ENST00000564994 A6NN06 94 aa4.82□□□□□ -1.64
VPS39-208ENST00000564994 KLKP1Q107X0 134 aa4.82□□□□□ -1.64
VPS39-208ENST00000564994 TRAV22A0A0B4J277 110 aa4.81□□□□□ -1.64
VPS39-208ENST00000564994 MUC12Q9UKN1 5478 aa4.79□□□□□ -1.64
VPS39-208ENST00000564994 LOC101927531A0A1B0GV80 90 aa4.79□□□□□ -1.64
VPS39-208ENST00000564994 FAM240AA0A1B0GVK7 77 aa4.77□□□□□ -1.65
VPS39-208ENST00000564994 ACYP1P07311 99 aa4.77□□□□□ -1.65
VPS39-208ENST00000564994 KRTAP10-5P60370 271 aa4.77□□□□□ -1.65
VPS39-208ENST00000564994 HIST1H4AP62805 103 aaKnown RBP4.75□□□□□ -1.65
VPS39-208ENST00000564994 UQCRQO14949 82 aa4.74□□□□□ -1.65
VPS39-208ENST00000564994 ATP5EP2Q5VTU8 51 aa4.74□□□□□ -1.65
VPS39-208ENST00000564994 H0Y9P7 68 aa4.73□□□□□ -1.65
VPS39-208ENST00000564994 CRIPTQ9P021 101 aa4.72□□□□□ -1.65
VPS39-208ENST00000564994 IMUPQ9GZP8 106 aa4.71□□□□□ -1.66
VPS39-208ENST00000564994 ATOX1O00244 68 aa4.7□□□□□ -1.66
VPS39-208ENST00000564994 MT-ATP8P03928 68 aa4.7□□□□□ -1.66
VPS39-208ENST00000564994 H0YAA0 97 aa4.68□□□□□ -1.66
VPS39-208ENST00000564994 NDUFC1O43677 76 aa4.68□□□□□ -1.66
VPS39-208ENST00000564994 LINC00643Q86TS7 51 aa4.68□□□□□ -1.66
VPS39-208ENST00000564994 KMT2DO14686 5537 aa4.66□□□□□ -1.66
VPS39-208ENST00000564994 KRTAP4-12Q9BQ66 201 aa4.66□□□□□ -1.66
VPS39-208ENST00000564994 A8MUN3 132 aa4.65□□□□□ -1.67
VPS39-208ENST00000564994 LINC00208Q96KT6 92 aa4.65□□□□□ -1.67
VPS39-208ENST00000564994 KRTAP5-9P26371 169 aa4.64□□□□□ -1.67
VPS39-208ENST00000564994 ADM2Q7Z4H4 148 aa4.64□□□□□ -1.67
VPS39-208ENST00000564994 ANAPC13Q9BS18 74 aa4.64□□□□□ -1.67
VPS39-208ENST00000564994 OCR1Q9BZK8 76 aa4.63□□□□□ -1.67
VPS39-208ENST00000564994 MDN1Q9NU22 5596 aa4.62□□□□□ -1.67
VPS39-208ENST00000564994 LCE3BQ5TA77 95 aa4.62□□□□□ -1.67
VPS39-208ENST00000564994 MP68P56378 58 aa4.59□□□□□ -1.67
VPS39-208ENST00000564994 MT1XP80297 61 aa4.56□□□□□ -1.68
VPS39-208ENST00000564994 P0C880 135 aa4.55□□□□□ -1.68
VPS39-208ENST00000564994 KRTAP9-9Q9BYP9 154 aa4.55□□□□□ -1.68
VPS39-208ENST00000564994 KRTAP9-4Q9BYQ2 154 aa4.55□□□□□ -1.68
VPS39-208ENST00000564994 KRTAP20-1Q3LI63 56 aa4.54□□□□□ -1.68
VPS39-208ENST00000564994 DMAC1Q96GE9 116 aa4.52□□□□□ -1.69
VPS39-208ENST00000564994 PRO2289Q9P1D8 64 aa4.52□□□□□ -1.69
VPS39-208ENST00000564994 KRTAP4-8A0A0G2JLE6 195 aa4.51□□□□□ -1.69
VPS39-208ENST00000564994 H3BPC8 53 aa4.51□□□□□ -1.69
VPS39-208ENST00000564994 PLAC4Q8WY50 150 aa4.51□□□□□ -1.69
VPS39-208ENST00000564994 R4GN34 69 aa4.51□□□□□ -1.69
VPS39-208ENST00000564994 COX7CP15954 63 aa4.49□□□□□ -1.69
VPS39-208ENST00000564994 SMIM20Q8N5G0 67 aa4.49□□□□□ -1.69
VPS39-208ENST00000564994 CCDC179H3BU77 68 aa4.48□□□□□ -1.69
VPS39-208ENST00000564994 M0QZ58 72 aa4.48□□□□□ -1.69
VPS39-208ENST00000564994 SPRR2FQ96RM1 72 aa4.48□□□□□ -1.69
VPS39-208ENST00000564994 C20orf197Q8N268 126 aa4.47□□□□□ -1.69
VPS39-208ENST00000564994 SERP2Q8N6R1 65 aa4.47□□□□□ -1.69
VPS39-208ENST00000564994 KRTAP12-2P59991 146 aa4.44□□□□□ -1.7
VPS39-208ENST00000564994 SPRR2EP22531 72 aa4.43□□□□□ -1.7
VPS39-208ENST00000564994 SPRR2BP35325 72 aa4.43□□□□□ -1.7
VPS39-208ENST00000564994 SPRR2AP35326 72 aa4.43□□□□□ -1.7
VPS39-208ENST00000564994 KRTAP8-1Q8IUC2 63 aa4.43□□□□□ -1.7
VPS39-208ENST00000564994 LINC01554Q52M75 96 aa4.42□□□□□ -1.7
VPS39-208ENST00000564994 TRAV7A0A075B6U4 112 aa4.41□□□□□ -1.7
VPS39-208ENST00000564994 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
VPS39-208ENST00000564994 KRTAP2-4Q9BYR9 128 aa4.41□□□□□ -1.7
VPS39-208ENST00000564994 TMEM258P61165 79 aa4.4□□□□□ -1.71
VPS39-208ENST00000564994 LCE1AQ5T7P2 110 aa4.38□□□□□ -1.71
VPS39-208ENST00000564994 ACYP2P14621 99 aa4.37□□□□□ -1.71
VPS39-208ENST00000564994 KRTAP10-7P60409 375 aaPredicted RBP4.36□□□□□ -1.71
VPS39-208ENST00000564994 KRTAP4-7Q9BYR0 210 aa4.36□□□□□ -1.71
VPS39-208ENST00000564994 LCE1DQ5T752 114 aa4.35□□□□□ -1.71
VPS39-208ENST00000564994 SVIPQ8NHG7 77 aa4.35□□□□□ -1.71
VPS39-208ENST00000564994 ATP5EP56381 51 aaPredicted RBP4.33□□□□□ -1.72
VPS39-208ENST00000564994 KRTAP10-12P60413 245 aa4.33□□□□□ -1.72
VPS39-208ENST00000564994 RPS28P62857 69 aaKnown RBP4.32□□□□□ -1.72
VPS39-208ENST00000564994 SPTSSBQ8NFR3 76 aa4.31□□□□□ -1.72
VPS39-208ENST00000564994 CHKB-CPT1BH3BT56 60 aa4.28□□□□□ -1.72
VPS39-208ENST00000564994 SNURFQ9Y675 71 aa4.28□□□□□ -1.72
VPS39-208ENST00000564994 H7BZZ5 65 aa4.27□□□□□ -1.73
VPS39-208ENST00000564994 SPRR2DP22532 72 aa4.27□□□□□ -1.73
VPS39-208ENST00000564994 KRTAP2-2Q9BYT5 123 aa4.27□□□□□ -1.73
VPS39-208ENST00000564994 KRTAP2-1Q9BYU5 128 aa4.27□□□□□ -1.73
VPS39-208ENST00000564994 CYSTM1Q9H1C7 97 aa4.26□□□□□ -1.73
VPS39-208ENST00000564994 SERP1Q9Y6X1 66 aa4.25□□□□□ -1.73
VPS39-208ENST00000564994 KRTAP13-4Q3LI77 160 aa4.24□□□□□ -1.73
VPS39-208ENST00000564994 KRTAP4-9Q9BYQ8 210 aa4.24□□□□□ -1.73
VPS39-208ENST00000564994 SPANXA2-OT1Q8N9U9 137 aa4.22□□□□□ -1.73
VPS39-208ENST00000564994 SMIM26A0A096LP01 95 aa4.17□□□□□ -1.74
VPS39-208ENST00000564994 KRTAP4-2Q9BYR5 136 aa4.17□□□□□ -1.74
VPS39-208ENST00000564994 CAMK2N1Q7Z7J9 78 aa4.13□□□□□ -1.75
VPS39-208ENST00000564994 DSTQ03001 7570 aaKnown RBP4.12□□□□□ -1.75
VPS39-208ENST00000564994 COA5Q86WW8 74 aa4.12□□□□□ -1.75
VPS39-208ENST00000564994 KRTAP19-7Q3SYF9 63 aa4.09□□□□□ -1.75
VPS39-208ENST00000564994 KRTAP4-11Q9BYQ6 195 aa4.08□□□□□ -1.76
VPS39-208ENST00000564994 V9GYY9 64 aa4.07□□□□□ -1.76
VPS39-208ENST00000564994 A0A0D9SG42 100 aa4.06□□□□□ -1.76
VPS39-208ENST00000564994 LCE4AQ5TA78 99 aa4.06□□□□□ -1.76
VPS39-208ENST00000564994 H3BS24 57 aa4.05□□□□□ -1.76
VPS39-208ENST00000564994 LCE5AQ5TCM9 118 aa4.05□□□□□ -1.76
VPS39-208ENST00000564994 SPATA8Q6RVD6 105 aa4.05□□□□□ -1.76
VPS39-208ENST00000564994 MT1EP04732 61 aa4.04□□□□□ -1.76
VPS39-208ENST00000564994 SEC61GP60059 68 aa4.03□□□□□ -1.76
VPS39-208ENST00000564994 Q1T7F1 81 aa4.02□□□□□ -1.77
VPS39-208ENST00000564994 A0A1B0GU33 70 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms