RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 ZCCHC13Q8WW36 166 aaKnown RBP3.01□□□□□ -1.93
LRRC28-220ENST00000561253 HRES1P13985 223 aa3□□□□□ -1.93
LRRC28-220ENST00000561253 LCE3AQ5TA76 89 aa3□□□□□ -1.93
LRRC28-220ENST00000561253 HCG22E2RYF7 251 aa2.99□□□□□ -1.93
LRRC28-220ENST00000561253 ATP5EP2Q5VTU8 51 aa2.99□□□□□ -1.93
LRRC28-220ENST00000561253 CASC2Q6XLA1 102 aa2.99□□□□□ -1.93
LRRC28-220ENST00000561253 WFDC13Q8IUB5 93 aa2.99□□□□□ -1.93
LRRC28-220ENST00000561253 MT1HP80294 61 aa2.98□□□□□ -1.93
LRRC28-220ENST00000561253 LINC00643Q86TS7 51 aa2.98□□□□□ -1.93
LRRC28-220ENST00000561253 A0A0U1RQV1 116 aa2.97□□□□□ -1.93
LRRC28-220ENST00000561253 SPINK7P58062 85 aa2.96□□□□□ -1.94
LRRC28-220ENST00000561253 A0A087WVE0 104 aa2.94□□□□□ -1.94
LRRC28-220ENST00000561253 J3QR89 54 aa2.94□□□□□ -1.94
LRRC28-220ENST00000561253 K7ERU9 68 aa2.92□□□□□ -1.94
LRRC28-220ENST00000561253 NDUFS5O43920 106 aa2.92□□□□□ -1.94
LRRC28-220ENST00000561253 MT-ATP8P03928 68 aa2.91□□□□□ -1.94
LRRC28-220ENST00000561253 HIST1H4AP62805 103 aaKnown RBP2.91□□□□□ -1.94
LRRC28-220ENST00000561253 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
LRRC28-220ENST00000561253 TP53AIP1Q9HCN2 124 aa2.91□□□□□ -1.94
LRRC28-220ENST00000561253 C7orf65Q6ZTY9 151 aa2.9□□□□□ -1.95
LRRC28-220ENST00000561253 SMIM26A0A096LP01 95 aa2.89□□□□□ -1.95
LRRC28-220ENST00000561253 SPRR5A0A1B0GTR4 108 aa2.89□□□□□ -1.95
LRRC28-220ENST00000561253 COX6B2Q6YFQ2 88 aa2.89□□□□□ -1.95
LRRC28-220ENST00000561253 IMUPQ9GZP8 106 aa2.89□□□□□ -1.95
LRRC28-220ENST00000561253 TRAV22A0A0B4J277 110 aa2.87□□□□□ -1.95
LRRC28-220ENST00000561253 UQCRQO14949 82 aa2.87□□□□□ -1.95
LRRC28-220ENST00000561253 CYP4F30PQ9H0H9 118 aa2.87□□□□□ -1.95
LRRC28-220ENST00000561253 RBM12B-AS1Q9P1G2 102 aa2.87□□□□□ -1.95
LRRC28-220ENST00000561253 LOC101927531A0A1B0GV80 90 aa2.85□□□□□ -1.95
LRRC28-220ENST00000561253 C4orf26Q17RF5 130 aa2.85□□□□□ -1.95
LRRC28-220ENST00000561253 H0Y9P7 68 aa2.84□□□□□ -1.95
LRRC28-220ENST00000561253 FSIP2Q5CZC0 6907 aa2.84□□□□□ -1.96
LRRC28-220ENST00000561253 FAM236DA0A1B0GTK5 79 aa2.83□□□□□ -1.96
LRRC28-220ENST00000561253 ATOX1O00244 68 aa2.83□□□□□ -1.96
LRRC28-220ENST00000561253 FAM236CP0DP71 79 aa2.83□□□□□ -1.96
LRRC28-220ENST00000561253 H1FX-AS1Q4G0G2 97 aa2.83□□□□□ -1.96
LRRC28-220ENST00000561253 KRTAP4-4Q9BYR3 166 aa2.83□□□□□ -1.96
LRRC28-220ENST00000561253 USH2AO75445 5202 aa2.83□□□□□ -1.96
LRRC28-220ENST00000561253 FAM236AA0A1B0GUQ0 79 aa2.82□□□□□ -1.96
LRRC28-220ENST00000561253 FAM236BA0A1B0GV22 79 aa2.82□□□□□ -1.96
LRRC28-220ENST00000561253 M0R2T5 61 aa2.82□□□□□ -1.96
LRRC28-220ENST00000561253 MT2AP02795 61 aa2.82□□□□□ -1.96
LRRC28-220ENST00000561253 MT1FP04733 61 aa2.81□□□□□ -1.96
LRRC28-220ENST00000561253 KLKP1Q107X0 134 aa2.81□□□□□ -1.96
LRRC28-220ENST00000561253 TRAV7A0A075B6U4 112 aa2.8□□□□□ -1.96
LRRC28-220ENST00000561253 H3BPC8 53 aa2.8□□□□□ -1.96
LRRC28-220ENST00000561253 KRTAP5-4Q6L8H1 288 aa2.8□□□□□ -1.96
LRRC28-220ENST00000561253 C1orf64Q8NEQ6 169 aa2.8□□□□□ -1.96
LRRC28-220ENST00000561253 LINC00208Q96KT6 92 aa2.8□□□□□ -1.96
LRRC28-220ENST00000561253 PP632Q6XCG6 107 aa2.79□□□□□ -1.96
LRRC28-220ENST00000561253 SSPOA2VEC9 5147 aa2.79□□□□□ -1.96
LRRC28-220ENST00000561253 SCGB1A1P11684 91 aa2.78□□□□□ -1.96
LRRC28-220ENST00000561253 MP68P56378 58 aa2.78□□□□□ -1.96
LRRC28-220ENST00000561253 KRTAP10-10P60014 251 aa2.78□□□□□ -1.96
LRRC28-220ENST00000561253 SPANXA2-OT1Q8N9U9 137 aa2.78□□□□□ -1.96
LRRC28-220ENST00000561253 LCA10Q71F78 164 aa2.77□□□□□ -1.97
LRRC28-220ENST00000561253 SMIM20Q8N5G0 67 aa2.77□□□□□ -1.97
LRRC28-220ENST00000561253 OBSCNQ5VST9 7968 aa2.76□□□□□ -1.97
LRRC28-220ENST00000561253 SERP2Q8N6R1 65 aa2.75□□□□□ -1.97
LRRC28-220ENST00000561253 A8MUN3 132 aa2.74□□□□□ -1.97
LRRC28-220ENST00000561253 DMAC1Q96GE9 116 aa2.74□□□□□ -1.97
LRRC28-220ENST00000561253 S4R3F8 94 aa2.74□□□□□ -1.97
LRRC28-220ENST00000561253 PSPHP1O15172 72 aa2.72□□□□□ -1.97
LRRC28-220ENST00000561253 KRTAP5-5Q701N2 237 aaPredicted RBP2.72□□□□□ -1.97
LRRC28-220ENST00000561253 LUZP6Q538Z0 58 aa2.71□□□□□ -1.98
LRRC28-220ENST00000561253 CSAG1Q6PB30 78 aa2.71□□□□□ -1.98
LRRC28-220ENST00000561253 SPINT4Q6UDR6 99 aa2.71□□□□□ -1.98
LRRC28-220ENST00000561253 CYSTM1Q9H1C7 97 aa2.71□□□□□ -1.98
LRRC28-220ENST00000561253 SNURFQ9Y675 71 aa2.71□□□□□ -1.98
LRRC28-220ENST00000561253 COX7CP15954 63 aa2.7□□□□□ -1.98
LRRC28-220ENST00000561253 C20orf197Q8N268 126 aa2.7□□□□□ -1.98
LRRC28-220ENST00000561253 FCGBPQ9Y6R7 5405 aaPredicted RBP2.69□□□□□ -1.98
LRRC28-220ENST00000561253 H0YAA0 97 aa2.68□□□□□ -1.98
LRRC28-220ENST00000561253 H7BZZ5 65 aa2.66□□□□□ -1.98
LRRC28-220ENST00000561253 NDUFC1O43677 76 aa2.66□□□□□ -1.98
LRRC28-220ENST00000561253 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
LRRC28-220ENST00000561253 SPRR2GQ9BYE4 73 aa2.65□□□□□ -1.99
LRRC28-220ENST00000561253 CCDC179H3BU77 68 aa2.63□□□□□ -1.99
LRRC28-220ENST00000561253 ACYP2P14621 99 aa2.63□□□□□ -1.99
LRRC28-220ENST00000561253 KRTAP5-9P26371 169 aa2.63□□□□□ -1.99
LRRC28-220ENST00000561253 KRTAP19-8Q3LI54 63 aa2.63□□□□□ -1.99
LRRC28-220ENST00000561253 ANAPC13Q9BS18 74 aa2.63□□□□□ -1.99
LRRC28-220ENST00000561253 MT1BP07438 61 aa2.62□□□□□ -1.99
LRRC28-220ENST00000561253 KRTAP4-3Q9BYR4 195 aa2.62□□□□□ -1.99
LRRC28-220ENST00000561253 P0C880 135 aa2.61□□□□□ -1.99
LRRC28-220ENST00000561253 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
LRRC28-220ENST00000561253 ADM2Q7Z4H4 148 aa2.6□□□□□ -1.99
LRRC28-220ENST00000561253 CRIPTQ9P021 101 aa2.6□□□□□ -1.99
LRRC28-220ENST00000561253 COA5Q86WW8 74 aa2.59□□□□□ -1.99
LRRC28-220ENST00000561253 PRO0628Q9UI54 55 aa2.57□□□□□ -2
LRRC28-220ENST00000561253 MACF1Q9UPN3 7388 aaKnown RBP2.56□□□□□ -2
LRRC28-220ENST00000561253 LCE1CQ5T751 118 aa2.56□□□□□ -2
LRRC28-220ENST00000561253 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
LRRC28-220ENST00000561253 SYNE2Q8WXH0 6885 aaKnown RBP2.56□□□□□ -2
LRRC28-220ENST00000561253 V9GYY9 64 aa2.55□□□□□ -2
LRRC28-220ENST00000561253 CHKB-CPT1BH3BT56 60 aa2.54□□□□□ -2
LRRC28-220ENST00000561253 Q5VV11 94 aa2.54□□□□□ -2
LRRC28-220ENST00000561253 SPTSSBQ8NFR3 76 aa2.54□□□□□ -2
LRRC28-220ENST00000561253 ATP5EP56381 51 aaPredicted RBP2.52□□□□□ -2.01
LRRC28-220ENST00000561253 TMEM258P61165 79 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms