RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 CSAG1Q6PB30 78 aa7.75□□□□□ -1.17
LRRC28-217ENST00000560213 H3BS24 57 aa7.71□□□□□ -1.18
LRRC28-217ENST00000560213 SERP2Q8N6R1 65 aa7.7□□□□□ -1.18
LRRC28-217ENST00000560213 NDUFC1O43677 76 aa7.65□□□□□ -1.18
LRRC28-217ENST00000560213 SNURFQ9Y675 71 aa7.65□□□□□ -1.18
LRRC28-217ENST00000560213 KRTAP9-3Q9BYQ3 159 aa7.64□□□□□ -1.19
LRRC28-217ENST00000560213 DMAC1Q96GE9 116 aa7.63□□□□□ -1.19
LRRC28-217ENST00000560213 C20orf197Q8N268 126 aa7.62□□□□□ -1.19
LRRC28-217ENST00000560213 ACYP2P14621 99 aa7.55□□□□□ -1.2
LRRC28-217ENST00000560213 COX7CP15954 63 aa7.55□□□□□ -1.2
LRRC28-217ENST00000560213 KRTAP9-6A0A140TA67 174 aa7.53□□□□□ -1.2
LRRC28-217ENST00000560213 CRCT1Q9UGL9 99 aa7.53□□□□□ -1.2
LRRC28-217ENST00000560213 SPANXA2-OT1Q8N9U9 137 aa7.49□□□□□ -1.21
LRRC28-217ENST00000560213 ANAPC13Q9BS18 74 aa7.47□□□□□ -1.21
LRRC28-217ENST00000560213 H0YAA0 97 aa7.46□□□□□ -1.22
LRRC28-217ENST00000560213 CHKB-CPT1BH3BT56 60 aa7.42□□□□□ -1.22
LRRC28-217ENST00000560213 ADM2Q7Z4H4 148 aa7.41□□□□□ -1.22
LRRC28-217ENST00000560213 SPTSSBQ8NFR3 76 aa7.4□□□□□ -1.22
LRRC28-217ENST00000560213 FSIP2Q5CZC0 6907 aa7.39□□□□□ -1.23
LRRC28-217ENST00000560213 KRTAP19-1Q8IUB9 90 aa7.38□□□□□ -1.23
LRRC28-217ENST00000560213 CRIPTQ9P021 101 aa7.38□□□□□ -1.23
LRRC28-217ENST00000560213 H7BZZ5 65 aa7.35□□□□□ -1.23
LRRC28-217ENST00000560213 SPRR2GQ9BYE4 73 aa7.35□□□□□ -1.23
LRRC28-217ENST00000560213 CYSTM1Q9H1C7 97 aa7.35□□□□□ -1.23
LRRC28-217ENST00000560213 USH2AO75445 5202 aa7.34□□□□□ -1.24
LRRC28-217ENST00000560213 CCDC179H3BU77 68 aa7.29□□□□□ -1.24
LRRC28-217ENST00000560213 P0C880 135 aa7.27□□□□□ -1.25
LRRC28-217ENST00000560213 COA5Q86WW8 74 aa7.27□□□□□ -1.25
LRRC28-217ENST00000560213 KRTAP19-8Q3LI54 63 aa7.25□□□□□ -1.25
LRRC28-217ENST00000560213 Q5VV11 94 aa7.25□□□□□ -1.25
LRRC28-217ENST00000560213 KRTAP19-6Q3LI70 58 aa7.21□□□□□ -1.26
LRRC28-217ENST00000560213 R4GN34 69 aa7.21□□□□□ -1.26
LRRC28-217ENST00000560213 MT1BP07438 61 aa7.2□□□□□ -1.26
LRRC28-217ENST00000560213 SSPOA2VEC9 5147 aa7.18□□□□□ -1.26
LRRC28-217ENST00000560213 M0QZ58 72 aa7.16□□□□□ -1.26
LRRC28-217ENST00000560213 ATP5EP56381 51 aaPredicted RBP7.11□□□□□ -1.27
LRRC28-217ENST00000560213 LOC100996750A0A140TA64 210 aa7.1□□□□□ -1.27
LRRC28-217ENST00000560213 KRTAP4-6Q9BYQ5 205 aa7.1□□□□□ -1.27
LRRC28-217ENST00000560213 SEC61GP60059 68 aa7.06□□□□□ -1.28
LRRC28-217ENST00000560213 LINC01554Q52M75 96 aa7.05□□□□□ -1.28
LRRC28-217ENST00000560213 SERP1Q9Y6X1 66 aa7.05□□□□□ -1.28
LRRC28-217ENST00000560213 A6NN06 94 aa7.04□□□□□ -1.28
LRRC28-217ENST00000560213 TMEM258P61165 79 aa7.04□□□□□ -1.28
LRRC28-217ENST00000560213 PLAC4Q8WY50 150 aa7.03□□□□□ -1.28
LRRC28-217ENST00000560213 FCGBPQ9Y6R7 5405 aaPredicted RBP7.02□□□□□ -1.29
LRRC28-217ENST00000560213 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.99□□□□□ -1.29
LRRC28-217ENST00000560213 KRTAP10-5P60370 271 aa6.98□□□□□ -1.29
LRRC28-217ENST00000560213 A0A1B0GU69 56 aa6.91□□□□□ -1.3
LRRC28-217ENST00000560213 KRTAP13-4Q3LI77 160 aa6.91□□□□□ -1.3
LRRC28-217ENST00000560213 A0A1B0GU33 70 aa6.89□□□□□ -1.31
LRRC28-217ENST00000560213 PRO2289Q9P1D8 64 aa6.88□□□□□ -1.31
LRRC28-217ENST00000560213 MT1XP80297 61 aa6.83□□□□□ -1.32
LRRC28-217ENST00000560213 SPATA8Q6RVD6 105 aa6.82□□□□□ -1.32
LRRC28-217ENST00000560213 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
LRRC28-217ENST00000560213 PRR15LQ9BU68 103 aa6.81□□□□□ -1.32
LRRC28-217ENST00000560213 LINC01558Q9Y6Z2 57 aa6.79□□□□□ -1.32
LRRC28-217ENST00000560213 A0A0D9SG42 100 aa6.78□□□□□ -1.32
LRRC28-217ENST00000560213 PCP4P48539 62 aa6.77□□□□□ -1.33
LRRC28-217ENST00000560213 KRTAP19-4Q3LI73 84 aa6.74□□□□□ -1.33
LRRC28-217ENST00000560213 KRTAP4-8Q9BYQ9 185 aa6.71□□□□□ -1.34
LRRC28-217ENST00000560213 SMIM26A0A096LP01 95 aa6.7□□□□□ -1.34
LRRC28-217ENST00000560213 CAMK2N1Q7Z7J9 78 aa6.69□□□□□ -1.34
LRRC28-217ENST00000560213 SPINT4Q6UDR6 99 aa6.67□□□□□ -1.34
LRRC28-217ENST00000560213 KRTAP6-3Q3LI67 103 aa6.65□□□□□ -1.34
LRRC28-217ENST00000560213 KRTAP4-12Q9BQ66 201 aa6.63□□□□□ -1.35
LRRC28-217ENST00000560213 MACF1Q9UPN3 7388 aaKnown RBP6.63□□□□□ -1.35
LRRC28-217ENST00000560213 A8MU10 97 aa6.62□□□□□ -1.35
LRRC28-217ENST00000560213 KRTAP12-1P59990 96 aa6.62□□□□□ -1.35
LRRC28-217ENST00000560213 V9GYY9 64 aa6.62□□□□□ -1.35
LRRC28-217ENST00000560213 KRTAP12-2P59991 146 aa6.61□□□□□ -1.35
LRRC28-217ENST00000560213 UQCR11O14957 56 aa6.59□□□□□ -1.35
LRRC28-217ENST00000560213 Q1T7F1 81 aa6.57□□□□□ -1.36
LRRC28-217ENST00000560213 SYNE2Q8WXH0 6885 aaKnown RBP6.53□□□□□ -1.36
LRRC28-217ENST00000560213 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
LRRC28-217ENST00000560213 RPS28P62857 69 aaKnown RBP6.53□□□□□ -1.36
LRRC28-217ENST00000560213 PSPHP1O15172 72 aa6.52□□□□□ -1.37
LRRC28-217ENST00000560213 KRTAP10-12P60413 245 aa6.5□□□□□ -1.37
LRRC28-217ENST00000560213 KRTAP8-1Q8IUC2 63 aa6.47□□□□□ -1.37
LRRC28-217ENST00000560213 KRTAP5-9P26371 169 aa6.46□□□□□ -1.38
LRRC28-217ENST00000560213 MIR22HGQ0VDD5 57 aa6.46□□□□□ -1.38
LRRC28-217ENST00000560213 KRTAP4-8A0A0G2JLE6 195 aa6.45□□□□□ -1.38
LRRC28-217ENST00000560213 KRTAP23-1A1A580 65 aa6.44□□□□□ -1.38
LRRC28-217ENST00000560213 LCE3BQ5TA77 95 aa6.4□□□□□ -1.38
LRRC28-217ENST00000560213 SPRR2FQ96RM1 72 aa6.38□□□□□ -1.39
LRRC28-217ENST00000560213 KMT2DO14686 5537 aa6.34□□□□□ -1.39
LRRC28-217ENST00000560213 A6NED7 52 aa6.33□□□□□ -1.4
LRRC28-217ENST00000560213 K7ERS5 55 aa6.31□□□□□ -1.4
LRRC28-217ENST00000560213 SVIPQ8NHG7 77 aa6.31□□□□□ -1.4
LRRC28-217ENST00000560213 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
LRRC28-217ENST00000560213 C10orf95Q9H7T3 257 aa6.3□□□□□ -1.4
LRRC28-217ENST00000560213 TNP1P09430 55 aa6.25□□□□□ -1.41
LRRC28-217ENST00000560213 KRTAP9-9Q9BYP9 154 aa6.24□□□□□ -1.41
LRRC28-217ENST00000560213 KRTAP9-4Q9BYQ2 154 aa6.24□□□□□ -1.41
LRRC28-217ENST00000560213 SPRR2EP22531 72 aa6.21□□□□□ -1.42
LRRC28-217ENST00000560213 SPRR2BP35325 72 aa6.21□□□□□ -1.42
LRRC28-217ENST00000560213 SPRR2AP35326 72 aa6.21□□□□□ -1.42
LRRC28-217ENST00000560213 MUC12Q9UKN1 5478 aa6.17□□□□□ -1.42
LRRC28-217ENST00000560213 LCE1AQ5T7P2 110 aa6.14□□□□□ -1.43
LRRC28-217ENST00000560213 NEBP20929 6669 aa6.1□□□□□ -1.43
LRRC28-217ENST00000560213 KRTAP19-7Q3SYF9 63 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms