RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 A6NN06 94 aa4.21□□□□□ -1.74
HDDC3-204ENST00000559834 KLKP1Q107X0 134 aa4.21□□□□□ -1.74
HDDC3-204ENST00000559834 SVIPQ8NHG7 77 aa4.21□□□□□ -1.74
HDDC3-204ENST00000559834 SNURFQ9Y675 71 aa4.21□□□□□ -1.74
HDDC3-204ENST00000559834 OCR1Q9BZK8 76 aa4.2□□□□□ -1.74
HDDC3-204ENST00000559834 H7BZZ5 65 aa4.19□□□□□ -1.74
HDDC3-204ENST00000559834 Q5W150 140 aa4.19□□□□□ -1.74
HDDC3-204ENST00000559834 C4orf26Q17RF5 130 aa4.18□□□□□ -1.74
HDDC3-204ENST00000559834 NEBP20929 6669 aa4.18□□□□□ -1.74
HDDC3-204ENST00000559834 HCG22E2RYF7 251 aa4.17□□□□□ -1.74
HDDC3-204ENST00000559834 C5orf47Q569G3 176 aa4.17□□□□□ -1.74
HDDC3-204ENST00000559834 Q5VV11 94 aa4.17□□□□□ -1.74
HDDC3-204ENST00000559834 NDUFC1O43677 76 aa4.15□□□□□ -1.75
HDDC3-204ENST00000559834 CSAG1Q6PB30 78 aa4.15□□□□□ -1.75
HDDC3-204ENST00000559834 CASC2Q6XLA1 102 aa4.15□□□□□ -1.75
HDDC3-204ENST00000559834 RPS28P62857 69 aaKnown RBP4.14□□□□□ -1.75
HDDC3-204ENST00000559834 MT1BP07438 61 aa4.13□□□□□ -1.75
HDDC3-204ENST00000559834 ATP5EP56381 51 aaPredicted RBP4.13□□□□□ -1.75
HDDC3-204ENST00000559834 S4R3F8 94 aa4.13□□□□□ -1.75
HDDC3-204ENST00000559834 KRTAP19-8Q3LI54 63 aa4.12□□□□□ -1.75
HDDC3-204ENST00000559834 KRTAP20-1Q3LI63 56 aa4.12□□□□□ -1.75
HDDC3-204ENST00000559834 SPRR2GQ9BYE4 73 aa4.12□□□□□ -1.75
HDDC3-204ENST00000559834 SERP1Q9Y6X1 66 aa4.12□□□□□ -1.75
HDDC3-204ENST00000559834 KRTAP10-5P60370 271 aa4.1□□□□□ -1.75
HDDC3-204ENST00000559834 C1orf64Q8NEQ6 169 aa4.09□□□□□ -1.75
HDDC3-204ENST00000559834 KRTAP3-1Q9BYR8 98 aa4.08□□□□□ -1.76
HDDC3-204ENST00000559834 H0Y9P7 68 aa4.07□□□□□ -1.76
HDDC3-204ENST00000559834 KRTAP5-9P26371 169 aa4.07□□□□□ -1.76
HDDC3-204ENST00000559834 LCA10Q71F78 164 aa4.07□□□□□ -1.76
HDDC3-204ENST00000559834 MP68P56378 58 aa4.06□□□□□ -1.76
HDDC3-204ENST00000559834 TRAV22A0A0B4J277 110 aa4.05□□□□□ -1.76
HDDC3-204ENST00000559834 H3BPC8 53 aa4.04□□□□□ -1.76
HDDC3-204ENST00000559834 LINC00208Q96KT6 92 aa4.04□□□□□ -1.76
HDDC3-204ENST00000559834 CRIPTQ9P021 101 aa4.04□□□□□ -1.76
HDDC3-204ENST00000559834 MUC12Q9UKN1 5478 aa4.04□□□□□ -1.76
HDDC3-204ENST00000559834 TP53AIP1Q9HCN2 124 aa4.03□□□□□ -1.76
HDDC3-204ENST00000559834 SMIM26A0A096LP01 95 aa4.02□□□□□ -1.77
HDDC3-204ENST00000559834 CYP4F30PQ9H0H9 118 aa4.01□□□□□ -1.77
HDDC3-204ENST00000559834 KRTAP2-3P0C7H8 128 aa3.99□□□□□ -1.77
HDDC3-204ENST00000559834 KRTAP2-4Q9BYR9 128 aa3.99□□□□□ -1.77
HDDC3-204ENST00000559834 SPANXA2-OT1Q8N9U9 137 aa3.98□□□□□ -1.77
HDDC3-204ENST00000559834 KRTAP3-3Q9BYR6 98 aa3.98□□□□□ -1.77
HDDC3-204ENST00000559834 KMT2DO14686 5537 aa3.95□□□□□ -1.78
HDDC3-204ENST00000559834 PRO2289Q9P1D8 64 aa3.94□□□□□ -1.78
HDDC3-204ENST00000559834 LOC101927531A0A1B0GV80 90 aa3.92□□□□□ -1.78
HDDC3-204ENST00000559834 H0YAA0 97 aa3.92□□□□□ -1.78
HDDC3-204ENST00000559834 SPRR2EP22531 72 aa3.91□□□□□ -1.78
HDDC3-204ENST00000559834 SPRR2BP35325 72 aa3.91□□□□□ -1.78
HDDC3-204ENST00000559834 SPRR2AP35326 72 aa3.91□□□□□ -1.78
HDDC3-204ENST00000559834 SPRR2FQ96RM1 72 aa3.91□□□□□ -1.78
HDDC3-204ENST00000559834 COA5Q86WW8 74 aa3.9□□□□□ -1.79
HDDC3-204ENST00000559834 Q1T7F1 81 aa3.89□□□□□ -1.79
HDDC3-204ENST00000559834 MDN1Q9NU22 5596 aa3.88□□□□□ -1.79
HDDC3-204ENST00000559834 A8MUN3 132 aa3.88□□□□□ -1.79
HDDC3-204ENST00000559834 PLAC4Q8WY50 150 aa3.88□□□□□ -1.79
HDDC3-204ENST00000559834 ADM2Q7Z4H4 148 aa3.86□□□□□ -1.79
HDDC3-204ENST00000559834 KRTAP8-1Q8IUC2 63 aa3.86□□□□□ -1.79
HDDC3-204ENST00000559834 V9GYY9 64 aa3.86□□□□□ -1.79
HDDC3-204ENST00000559834 KRTAP2-2Q9BYT5 123 aa3.85□□□□□ -1.79
HDDC3-204ENST00000559834 KRTAP2-1Q9BYU5 128 aa3.85□□□□□ -1.79
HDDC3-204ENST00000559834 PSPHP1O15172 72 aa3.84□□□□□ -1.79
HDDC3-204ENST00000559834 BRK1Q8WUW1 75 aa3.84□□□□□ -1.79
HDDC3-204ENST00000559834 MT1XP80297 61 aa3.83□□□□□ -1.8
HDDC3-204ENST00000559834 PRR15LQ9BU68 103 aa3.82□□□□□ -1.8
HDDC3-204ENST00000559834 PRO0628Q9UI54 55 aa3.82□□□□□ -1.8
HDDC3-204ENST00000559834 KRTAP12-2P59991 146 aa3.81□□□□□ -1.8
HDDC3-204ENST00000559834 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
HDDC3-204ENST00000559834 DMAC1Q96GE9 116 aa3.81□□□□□ -1.8
HDDC3-204ENST00000559834 R4GN34 69 aa3.8□□□□□ -1.8
HDDC3-204ENST00000559834 ACYP2P14621 99 aa3.79□□□□□ -1.8
HDDC3-204ENST00000559834 LINC01558Q9Y6Z2 57 aa3.79□□□□□ -1.8
HDDC3-204ENST00000559834 SPRR2DP22532 72 aa3.78□□□□□ -1.8
HDDC3-204ENST00000559834 CHKB-CPT1BH3BT56 60 aa3.76□□□□□ -1.81
HDDC3-204ENST00000559834 M0QZ58 72 aa3.74□□□□□ -1.81
HDDC3-204ENST00000559834 KRTAP4-8A0A0G2JLE6 195 aa3.73□□□□□ -1.81
HDDC3-204ENST00000559834 KRTAP4-8Q9BYQ9 185 aa3.73□□□□□ -1.81
HDDC3-204ENST00000559834 A6NED7 52 aa3.71□□□□□ -1.82
HDDC3-204ENST00000559834 A8MU10 97 aa3.71□□□□□ -1.82
HDDC3-204ENST00000559834 P0C880 135 aa3.71□□□□□ -1.82
HDDC3-204ENST00000559834 LINC01554Q52M75 96 aa3.7□□□□□ -1.82
HDDC3-204ENST00000559834 LCE3BQ5TA77 95 aa3.69□□□□□ -1.82
HDDC3-204ENST00000559834 CDC42SE1Q9NRR8 79 aa3.68□□□□□ -1.82
HDDC3-204ENST00000559834 A0A1B0GU69 56 aa3.66□□□□□ -1.82
HDDC3-204ENST00000559834 KRTAP10-7P60409 375 aaPredicted RBP3.66□□□□□ -1.82
HDDC3-204ENST00000559834 KRTAP10-12P60413 245 aa3.65□□□□□ -1.83
HDDC3-204ENST00000559834 KRTAP3-2Q9BYR7 98 aa3.64□□□□□ -1.83
HDDC3-204ENST00000559834 SPTSSBQ8NFR3 76 aa3.63□□□□□ -1.83
HDDC3-204ENST00000559834 PMAIP1Q13794 54 aa3.59□□□□□ -1.83
HDDC3-204ENST00000559834 UQCR11O14957 56 aa3.57□□□□□ -1.84
HDDC3-204ENST00000559834 SPATA8Q6RVD6 105 aa3.57□□□□□ -1.84
HDDC3-204ENST00000559834 SEC61GP60059 68 aa3.56□□□□□ -1.84
HDDC3-204ENST00000559834 MIR22HGQ0VDD5 57 aa3.56□□□□□ -1.84
HDDC3-204ENST00000559834 KTN1-AS1Q86SY8 53 aa3.54□□□□□ -1.84
HDDC3-204ENST00000559834 DSTQ03001 7570 aaKnown RBP3.5□□□□□ -1.85
HDDC3-204ENST00000559834 GPR98Q8WXG9 6306 aa3.49□□□□□ -1.85
HDDC3-204ENST00000559834 A0A1B0GU33 70 aa3.47□□□□□ -1.85
HDDC3-204ENST00000559834 LCE5AQ5TCM9 118 aa3.47□□□□□ -1.85
HDDC3-204ENST00000559834 CAMK2N1Q7Z7J9 78 aa3.47□□□□□ -1.85
HDDC3-204ENST00000559834 KRTAP4-9Q9BYQ8 210 aa3.46□□□□□ -1.86
HDDC3-204ENST00000559834 KRTAP19-3Q7Z4W3 81 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms