RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 ABCA13Q86UQ4 5058 aa5.64□□□□□ -1.51
CUX1-217ENST00000558836 LPAP08519 4548 aa5.64□□□□□ -1.51
CUX1-217ENST00000558836 KRTAP3-1Q9BYR8 98 aa5.64□□□□□ -1.51
CUX1-217ENST00000558836 A0A1B0GU69 56 aa5.64□□□□□ -1.51
CUX1-217ENST00000558836 J3QL48 77 aa5.63□□□□□ -1.51
CUX1-217ENST00000558836 MT1HL1P0DM35 61 aa5.61□□□□□ -1.51
CUX1-217ENST00000558836 LRP2P98164 4655 aa5.61□□□□□ -1.51
CUX1-217ENST00000558836 KRTAP4-5Q9BYR2 181 aa5.59□□□□□ -1.51
CUX1-217ENST00000558836 XP32Q5T750 250 aa5.58□□□□□ -1.52
CUX1-217ENST00000558836 CSAG1Q6PB30 78 aa5.58□□□□□ -1.52
CUX1-217ENST00000558836 ROMO1P60602 79 aa5.57□□□□□ -1.52
CUX1-217ENST00000558836 RPL37P61927 97 aaKnown RBP5.54□□□□□ -1.52
CUX1-217ENST00000558836 COX6B2Q6YFQ2 88 aa5.51□□□□□ -1.53
CUX1-217ENST00000558836 UQCR11O14957 56 aa5.48□□□□□ -1.53
CUX1-217ENST00000558836 P0C880 135 aa5.48□□□□□ -1.53
CUX1-217ENST00000558836 MIR22HGQ0VDD5 57 aa5.48□□□□□ -1.53
CUX1-217ENST00000558836 HERC2O95714 4834 aa5.46□□□□□ -1.53
CUX1-217ENST00000558836 SPATA8Q6RVD6 105 aa5.44□□□□□ -1.54
CUX1-217ENST00000558836 MUC2Q02817 5179 aa5.42□□□□□ -1.54
CUX1-217ENST00000558836 SEC61BP60468 96 aaKnown RBP5.4□□□□□ -1.54
CUX1-217ENST00000558836 KRTAP3-3Q9BYR6 98 aa5.4□□□□□ -1.55
CUX1-217ENST00000558836 H0YAA0 97 aa5.38□□□□□ -1.55
CUX1-217ENST00000558836 A0A1B0GU33 70 aa5.37□□□□□ -1.55
CUX1-217ENST00000558836 TPRXLQ17RH7 258 aa5.37□□□□□ -1.55
CUX1-217ENST00000558836 HERC1Q15751 4861 aa5.35□□□□□ -1.55
CUX1-217ENST00000558836 S4R3F8 94 aa5.35□□□□□ -1.55
CUX1-217ENST00000558836 H1FX-AS1Q4G0G2 97 aa5.34□□□□□ -1.55
CUX1-217ENST00000558836 PCLOQ9Y6V0 5065 aa5.32□□□□□ -1.56
CUX1-217ENST00000558836 NDUFAF8A1L188 74 aa5.31□□□□□ -1.56
CUX1-217ENST00000558836 LUZP6Q538Z0 58 aa5.31□□□□□ -1.56
CUX1-217ENST00000558836 BIRC6Q9NR09 4857 aa5.3□□□□□ -1.56
CUX1-217ENST00000558836 KRTAP10-6P60371 365 aaPredicted RBP5.29□□□□□ -1.56
CUX1-217ENST00000558836 KRTAP25-1Q3LHN0 102 aa5.27□□□□□ -1.57
CUX1-217ENST00000558836 KRTAP3-2Q9BYR7 98 aa5.26□□□□□ -1.57
CUX1-217ENST00000558836 MUC17Q685J3 4493 aa5.26□□□□□ -1.57
CUX1-217ENST00000558836 KRTAP13-4Q3LI77 160 aa5.25□□□□□ -1.57
CUX1-217ENST00000558836 CRIPTQ9P021 101 aa5.25□□□□□ -1.57
CUX1-217ENST00000558836 A0A0D9SG42 100 aa5.25□□□□□ -1.57
CUX1-217ENST00000558836 KRTAP4-1Q9BYQ7 146 aa5.23□□□□□ -1.57
CUX1-217ENST00000558836 LCE2DQ5TA82 110 aaPredicted RBP5.19□□□□□ -1.58
CUX1-217ENST00000558836 RNF213Q63HN8 5207 aa5.17□□□□□ -1.58
CUX1-217ENST00000558836 FAT4Q6V0I7 4981 aa5.16□□□□□ -1.58
CUX1-217ENST00000558836 K7ERS5 55 aa5.13□□□□□ -1.59
CUX1-217ENST00000558836 HMCN2Q8NDA2 5059 aa5.1□□□□□ -1.59
CUX1-217ENST00000558836 SPINT4Q6UDR6 99 aa5.08□□□□□ -1.6
CUX1-217ENST00000558836 UBR4Q5T4S7 5183 aa5.08□□□□□ -1.6
CUX1-217ENST00000558836 KRTAP12-2P59991 146 aa5.06□□□□□ -1.6
CUX1-217ENST00000558836 KRTAP19-2Q3LHN2 52 aa5.04□□□□□ -1.6
CUX1-217ENST00000558836 LORP23490 312 aaPredicted RBP5.03□□□□□ -1.6
CUX1-217ENST00000558836 KRTAP15-1Q3LI76 137 aa5.03□□□□□ -1.6
CUX1-217ENST00000558836 M0QZ58 72 aa5.01□□□□□ -1.61
CUX1-217ENST00000558836 FLGP20930 4061 aaPredicted RBP5.01□□□□□ -1.61
CUX1-217ENST00000558836 KRTAP12-1P59990 96 aa5□□□□□ -1.61
CUX1-217ENST00000558836 R4GN34 69 aa4.99□□□□□ -1.61
CUX1-217ENST00000558836 C10orf95Q9H7T3 257 aa4.95□□□□□ -1.62
CUX1-217ENST00000558836 LCE2CQ5TA81 110 aa4.83□□□□□ -1.64
CUX1-217ENST00000558836 M0R2T5 61 aa4.78□□□□□ -1.64
CUX1-217ENST00000558836 CAMK2N1Q7Z7J9 78 aa4.76□□□□□ -1.65
CUX1-217ENST00000558836 MT1HP80294 61 aa4.72□□□□□ -1.65
CUX1-217ENST00000558836 LCE2BO14633 110 aa4.67□□□□□ -1.66
CUX1-217ENST00000558836 KRTAP10-10P60014 251 aa4.62□□□□□ -1.67
CUX1-217ENST00000558836 MT1FP04733 61 aa4.61□□□□□ -1.67
CUX1-217ENST00000558836 KRTAP19-1Q8IUB9 90 aa4.61□□□□□ -1.67
CUX1-217ENST00000558836 MT2AP02795 61 aa4.59□□□□□ -1.67
CUX1-217ENST00000558836 LCE2AQ5TA79 106 aaPredicted RBP4.59□□□□□ -1.68
CUX1-217ENST00000558836 KRTAP9-8Q9BYQ0 159 aa4.58□□□□□ -1.68
CUX1-217ENST00000558836 USH2AO75445 5202 aa4.58□□□□□ -1.68
CUX1-217ENST00000558836 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
CUX1-217ENST00000558836 PLAC4Q8WY50 150 aa4.53□□□□□ -1.68
CUX1-217ENST00000558836 FSIP2Q5CZC0 6907 aa4.49□□□□□ -1.69
CUX1-217ENST00000558836 TNP1P09430 55 aa4.47□□□□□ -1.69
CUX1-217ENST00000558836 PRO2289Q9P1D8 64 aa4.46□□□□□ -1.7
CUX1-217ENST00000558836 KRTAP23-1A1A580 65 aa4.44□□□□□ -1.7
CUX1-217ENST00000558836 PP632Q6XCG6 107 aa4.4□□□□□ -1.71
CUX1-217ENST00000558836 MT1BP07438 61 aa4.39□□□□□ -1.71
CUX1-217ENST00000558836 KRTAP9-3Q9BYQ3 159 aa4.38□□□□□ -1.71
CUX1-217ENST00000558836 KRTAP19-8Q3LI54 63 aa4.38□□□□□ -1.71
CUX1-217ENST00000558836 KMT2DO14686 5537 aa4.35□□□□□ -1.71
CUX1-217ENST00000558836 KRTAP10-5P60370 271 aa4.32□□□□□ -1.72
CUX1-217ENST00000558836 MT1XP80297 61 aa4.32□□□□□ -1.72
CUX1-217ENST00000558836 LCE3AQ5TA76 89 aa4.31□□□□□ -1.72
CUX1-217ENST00000558836 KRTAP10-7P60409 375 aaPredicted RBP4.23□□□□□ -1.73
CUX1-217ENST00000558836 KRTAP10-12P60413 245 aa4.17□□□□□ -1.74
CUX1-217ENST00000558836 KRTAP8-1Q8IUC2 63 aa4.12□□□□□ -1.75
CUX1-217ENST00000558836 INE1O15225 51 aa4.11□□□□□ -1.75
CUX1-217ENST00000558836 SSPOA2VEC9 5147 aa4.09□□□□□ -1.75
CUX1-217ENST00000558836 KRTAP12-3P60328 96 aa4.09□□□□□ -1.75
CUX1-217ENST00000558836 KRTAP4-8A0A0G2JLE6 195 aa4.07□□□□□ -1.76
CUX1-217ENST00000558836 KRTAP4-8Q9BYQ9 185 aa4.07□□□□□ -1.76
CUX1-217ENST00000558836 SPRR5A0A1B0GTR4 108 aa4.04□□□□□ -1.76
CUX1-217ENST00000558836 KRTAP19-5Q3LI72 72 aa4.01□□□□□ -1.77
CUX1-217ENST00000558836 MUC12Q9UKN1 5478 aa3.88□□□□□ -1.79
CUX1-217ENST00000558836 FCGBPQ9Y6R7 5405 aaPredicted RBP3.87□□□□□ -1.79
CUX1-217ENST00000558836 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
CUX1-217ENST00000558836 DSTQ03001 7570 aaKnown RBP3.83□□□□□ -1.8
CUX1-217ENST00000558836 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
CUX1-217ENST00000558836 KRTAP4-7Q9BYR0 210 aa3.83□□□□□ -1.8
CUX1-217ENST00000558836 KRTAP19-6Q3LI70 58 aa3.81□□□□□ -1.8
CUX1-217ENST00000558836 SYNE2Q8WXH0 6885 aaKnown RBP3.79□□□□□ -1.8
CUX1-217ENST00000558836 MACF1Q9UPN3 7388 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms