RNA–Protein interactions for RNA: ENST00000558298.5

RTF1-205, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 5

Gene RTF1, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-205ENST00000558298 A0A0G2JQZ4 141 aa4.61□□□□□ -1.67
RTF1-205ENST00000558298 K7ERS5 55 aa4.6□□□□□ -1.67
RTF1-205ENST00000558298 CSAG1Q6PB30 78 aa4.6□□□□□ -1.67
RTF1-205ENST00000558298 IGKV2-30P06310 120 aa4.59□□□□□ -1.67
RTF1-205ENST00000558298 IGLV9-49A0A0B4J1Y8 123 aa4.58□□□□□ -1.68
RTF1-205ENST00000558298 KRTAP13-2Q52LG2 175 aa4.58□□□□□ -1.68
RTF1-205ENST00000558298 SSBP3-AS1Q7Z2R9 100 aa4.58□□□□□ -1.68
RTF1-205ENST00000558298 RNF213Q63HN8 5207 aa4.56□□□□□ -1.68
RTF1-205ENST00000558298 Q5W150 140 aa4.56□□□□□ -1.68
RTF1-205ENST00000558298 RPS29P62273 56 aaKnown RBP4.55□□□□□ -1.68
RTF1-205ENST00000558298 KRTAP25-1Q3LHN0 102 aa4.55□□□□□ -1.68
RTF1-205ENST00000558298 TYMSOSQ8TAI1 123 aa4.55□□□□□ -1.68
RTF1-205ENST00000558298 IGKV2D-30A0A075B6S6 120 aa4.54□□□□□ -1.68
RTF1-205ENST00000558298 ROMO1P60602 79 aa4.54□□□□□ -1.68
RTF1-205ENST00000558298 ADM2Q7Z4H4 148 aa4.54□□□□□ -1.68
RTF1-205ENST00000558298 ANAPC11Q9NYG5 84 aa4.54□□□□□ -1.68
RTF1-205ENST00000558298 LINC00304Q8N9R0 145 aa4.53□□□□□ -1.68
RTF1-205ENST00000558298 LPAP08519 4548 aa4.52□□□□□ -1.69
RTF1-205ENST00000558298 A8MUU9 505 aa4.5□□□□□ -1.69
RTF1-205ENST00000558298 SPINK1P00995 79 aa4.5□□□□□ -1.69
RTF1-205ENST00000558298 LOC100996750A0A140TA64 210 aa4.45□□□□□ -1.7
RTF1-205ENST00000558298 TPRXLQ17RH7 258 aa4.45□□□□□ -1.7
RTF1-205ENST00000558298 KRTAP4-6Q9BYQ5 205 aa4.45□□□□□ -1.7
RTF1-205ENST00000558298 A0A1B0GU33 70 aa4.42□□□□□ -1.7
RTF1-205ENST00000558298 COX6B2Q6YFQ2 88 aa4.42□□□□□ -1.7
RTF1-205ENST00000558298 MUC2Q02817 5179 aa4.41□□□□□ -1.7
RTF1-205ENST00000558298 H1FX-AS1Q4G0G2 97 aa4.38□□□□□ -1.71
RTF1-205ENST00000558298 KRTAP16-1A8MUX0 517 aa4.37□□□□□ -1.71
RTF1-205ENST00000558298 MUC17Q685J3 4493 aa4.36□□□□□ -1.71
RTF1-205ENST00000558298 H0YAA0 97 aa4.36□□□□□ -1.71
RTF1-205ENST00000558298 FAT4Q6V0I7 4981 aa4.32□□□□□ -1.72
RTF1-205ENST00000558298 XP32Q5T750 250 aa4.31□□□□□ -1.72
RTF1-205ENST00000558298 SPINT4Q6UDR6 99 aa4.29□□□□□ -1.72
RTF1-205ENST00000558298 RPL37P61927 97 aaKnown RBP4.28□□□□□ -1.72
RTF1-205ENST00000558298 LCE2AQ5TA79 106 aaPredicted RBP4.26□□□□□ -1.73
RTF1-205ENST00000558298 SEC61BP60468 96 aaKnown RBP4.25□□□□□ -1.73
RTF1-205ENST00000558298 CRIPTQ9P021 101 aa4.25□□□□□ -1.73
RTF1-205ENST00000558298 P0C880 135 aa4.23□□□□□ -1.73
RTF1-205ENST00000558298 C20orf166-AS1Q96NR2 134 aa4.23□□□□□ -1.73
RTF1-205ENST00000558298 KRTAP4-1Q9BYQ7 146 aa4.21□□□□□ -1.74
RTF1-205ENST00000558298 LCE2BO14633 110 aa4.18□□□□□ -1.74
RTF1-205ENST00000558298 C9orf92A6NGG3 77 aa4.17□□□□□ -1.74
RTF1-205ENST00000558298 KRTAP15-1Q3LI76 137 aa4.16□□□□□ -1.74
RTF1-205ENST00000558298 KRTAP19-2Q3LHN2 52 aa4.15□□□□□ -1.75
RTF1-205ENST00000558298 NDUFAF8A1L188 74 aa4.13□□□□□ -1.75
RTF1-205ENST00000558298 LCE2CQ5TA81 110 aa4.13□□□□□ -1.75
RTF1-205ENST00000558298 A0A0A0MQY5 61 aa4.07□□□□□ -1.76
RTF1-205ENST00000558298 KRTAP9-2Q9BYQ4 174 aa4.07□□□□□ -1.76
RTF1-205ENST00000558298 KRTAP3-1Q9BYR8 98 aa4.07□□□□□ -1.76
RTF1-205ENST00000558298 FLGP20930 4061 aaPredicted RBP4.07□□□□□ -1.76
RTF1-205ENST00000558298 M0QZ58 72 aa4.04□□□□□ -1.76
RTF1-205ENST00000558298 MT1HP80294 61 aa4.04□□□□□ -1.76
RTF1-205ENST00000558298 LUZP6Q538Z0 58 aa4.04□□□□□ -1.76
RTF1-205ENST00000558298 S4R3F8 94 aa4.04□□□□□ -1.76
RTF1-205ENST00000558298 KRTAP10-6P60371 365 aaPredicted RBP4.02□□□□□ -1.77
RTF1-205ENST00000558298 LORP23490 312 aaPredicted RBP3.98□□□□□ -1.77
RTF1-205ENST00000558298 A0A0D9SG42 100 aa3.97□□□□□ -1.77
RTF1-205ENST00000558298 PP632Q6XCG6 107 aa3.95□□□□□ -1.78
RTF1-205ENST00000558298 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.94□□□□□ -1.78
RTF1-205ENST00000558298 KRTAP9-6A0A140TA67 174 aa3.91□□□□□ -1.78
RTF1-205ENST00000558298 KRTAP12-1P59990 96 aa3.91□□□□□ -1.78
RTF1-205ENST00000558298 KRTAP13-4Q3LI77 160 aa3.91□□□□□ -1.78
RTF1-205ENST00000558298 PLAC4Q8WY50 150 aa3.91□□□□□ -1.78
RTF1-205ENST00000558298 KRTAP4-8Q9BYQ9 185 aa3.9□□□□□ -1.79
RTF1-205ENST00000558298 C10orf95Q9H7T3 257 aa3.9□□□□□ -1.79
RTF1-205ENST00000558298 KRTAP12-2P59991 146 aa3.88□□□□□ -1.79
RTF1-205ENST00000558298 CAMK2N1Q7Z7J9 78 aa3.87□□□□□ -1.79
RTF1-205ENST00000558298 FSIP2Q5CZC0 6907 aa3.86□□□□□ -1.79
RTF1-205ENST00000558298 M0R2T5 61 aa3.84□□□□□ -1.79
RTF1-205ENST00000558298 KRTAP9-8Q9BYQ0 159 aa3.84□□□□□ -1.79
RTF1-205ENST00000558298 CRCT1Q9UGL9 99 aa3.83□□□□□ -1.8
RTF1-205ENST00000558298 USH2AO75445 5202 aa3.79□□□□□ -1.8
RTF1-205ENST00000558298 SSPOA2VEC9 5147 aa3.78□□□□□ -1.8
RTF1-205ENST00000558298 KRTAP23-1A1A580 65 aa3.78□□□□□ -1.8
RTF1-205ENST00000558298 MT2AP02795 61 aa3.77□□□□□ -1.81
RTF1-205ENST00000558298 MT1FP04733 61 aa3.75□□□□□ -1.81
RTF1-205ENST00000558298 R4GN34 69 aa3.75□□□□□ -1.81
RTF1-205ENST00000558298 KRTAP9-3Q9BYQ3 159 aa3.72□□□□□ -1.81
RTF1-205ENST00000558298 KRTAP9-9Q9BYP9 154 aa3.7□□□□□ -1.82
RTF1-205ENST00000558298 KRTAP9-4Q9BYQ2 154 aa3.7□□□□□ -1.82
RTF1-205ENST00000558298 KRTAP4-8A0A0G2JLE6 195 aa3.68□□□□□ -1.82
RTF1-205ENST00000558298 KRTAP10-10P60014 251 aa3.65□□□□□ -1.83
RTF1-205ENST00000558298 FCGBPQ9Y6R7 5405 aaPredicted RBP3.64□□□□□ -1.83
RTF1-205ENST00000558298 INE1O15225 51 aa3.64□□□□□ -1.83
RTF1-205ENST00000558298 PRO2289Q9P1D8 64 aa3.64□□□□□ -1.83
RTF1-205ENST00000558298 LCE3BQ5TA77 95 aa3.62□□□□□ -1.83
RTF1-205ENST00000558298 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
RTF1-205ENST00000558298 KRTAP19-1Q8IUB9 90 aa3.6□□□□□ -1.83
RTF1-205ENST00000558298 TNP1P09430 55 aa3.59□□□□□ -1.83
RTF1-205ENST00000558298 KRTAP19-6Q3LI70 58 aa3.57□□□□□ -1.84
RTF1-205ENST00000558298 SPRR2GQ9BYE4 73 aa3.57□□□□□ -1.84
RTF1-205ENST00000558298 KRTAP4-12Q9BQ66 201 aa3.56□□□□□ -1.84
RTF1-205ENST00000558298 KRTAP4-7Q9BYR0 210 aa3.56□□□□□ -1.84
RTF1-205ENST00000558298 KRTAP9-7A8MTY7 169 aa3.52□□□□□ -1.85
RTF1-205ENST00000558298 KRTAP19-8Q3LI54 63 aa3.52□□□□□ -1.85
RTF1-205ENST00000558298 KRTAP4-2Q9BYR5 136 aa3.48□□□□□ -1.85
RTF1-205ENST00000558298 MT1BP07438 61 aa3.46□□□□□ -1.86
RTF1-205ENST00000558298 MACF1Q9UPN3 7388 aaKnown RBP3.46□□□□□ -1.86
RTF1-205ENST00000558298 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
RTF1-205ENST00000558298 SYNE2Q8WXH0 6885 aaKnown RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms