RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RYR3Q15413 4870 aa2.87□□□□□ -1.95
TMEM260-210ENST00000556422 A0A1B0GVY2 172 aa2.86□□□□□ -1.95
TMEM260-210ENST00000556422 Q8N1X5 172 aa2.86□□□□□ -1.95
TMEM260-210ENST00000556422 A0A1B0GU33 70 aa2.86□□□□□ -1.95
TMEM260-210ENST00000556422 SPINK6Q6UWN8 80 aa2.85□□□□□ -1.95
TMEM260-210ENST00000556422 KRTAP17-1Q9BYP8 105 aa2.85□□□□□ -1.95
TMEM260-210ENST00000556422 MRPL34Q9BQ48 92 aaKnown RBP2.84□□□□□ -1.95
TMEM260-210ENST00000556422 BIRC6Q9NR09 4857 aa2.84□□□□□ -1.96
TMEM260-210ENST00000556422 KRTAP10-4P60372 401 aaPredicted RBP2.84□□□□□ -1.96
TMEM260-210ENST00000556422 KRTAP13-3Q3SY46 172 aa2.83□□□□□ -1.96
TMEM260-210ENST00000556422 HSPG2P98160 4391 aa2.83□□□□□ -1.96
TMEM260-210ENST00000556422 SPINK1P00995 79 aa2.83□□□□□ -1.96
TMEM260-210ENST00000556422 R4GN34 69 aa2.82□□□□□ -1.96
TMEM260-210ENST00000556422 LRP1Q07954 4544 aaKnown RBP2.82□□□□□ -1.96
TMEM260-210ENST00000556422 SMR3BP02814 79 aaPredicted RBP2.81□□□□□ -1.96
TMEM260-210ENST00000556422 TNXBP22105 4242 aa2.81□□□□□ -1.96
TMEM260-210ENST00000556422 DMBT1Q9UGM3 2413 aaPredicted RBP2.81□□□□□ -1.96
TMEM260-210ENST00000556422 RYR1P21817 5038 aa2.77□□□□□ -1.97
TMEM260-210ENST00000556422 C10orf95Q9H7T3 257 aa2.77□□□□□ -1.97
TMEM260-210ENST00000556422 MYCBP2O75592 4640 aa2.77□□□□□ -1.97
TMEM260-210ENST00000556422 RPS29P62273 56 aaKnown RBP2.77□□□□□ -1.97
TMEM260-210ENST00000556422 FAT3Q8TDW7 4589 aa2.76□□□□□ -1.97
TMEM260-210ENST00000556422 KIAA1109Q2LD37 5005 aa2.76□□□□□ -1.97
TMEM260-210ENST00000556422 TPRXLQ17RH7 258 aa2.75□□□□□ -1.97
TMEM260-210ENST00000556422 PRO2289Q9P1D8 64 aa2.75□□□□□ -1.97
TMEM260-210ENST00000556422 EPPK1P58107 5090 aaKnown RBP2.75□□□□□ -1.97
TMEM260-210ENST00000556422 H0YAA0 97 aa2.74□□□□□ -1.97
TMEM260-210ENST00000556422 IGKV2-30P06310 120 aa2.73□□□□□ -1.97
TMEM260-210ENST00000556422 PLAC4Q8WY50 150 aa2.72□□□□□ -1.97
TMEM260-210ENST00000556422 Q5VSD8 79 aa2.69□□□□□ -1.98
TMEM260-210ENST00000556422 IGKV2D-30A0A075B6S6 120 aa2.69□□□□□ -1.98
TMEM260-210ENST00000556422 C9orf92A6NGG3 77 aa2.69□□□□□ -1.98
TMEM260-210ENST00000556422 KRTAP10-8P60410 259 aa2.69□□□□□ -1.98
TMEM260-210ENST00000556422 H1FX-AS1Q4G0G2 97 aa2.68□□□□□ -1.98
TMEM260-210ENST00000556422 RPL37P61927 97 aaKnown RBP2.68□□□□□ -1.98
TMEM260-210ENST00000556422 KRTAP4-5Q9BYR2 181 aa2.67□□□□□ -1.98
TMEM260-210ENST00000556422 LPAP08519 4548 aa2.67□□□□□ -1.98
TMEM260-210ENST00000556422 ABCA13Q86UQ4 5058 aa2.66□□□□□ -1.98
TMEM260-210ENST00000556422 HERC2O95714 4834 aa2.66□□□□□ -1.98
TMEM260-210ENST00000556422 A0A0D9SG42 100 aa2.65□□□□□ -1.98
TMEM260-210ENST00000556422 MT1HL1P0DM35 61 aa2.65□□□□□ -1.99
TMEM260-210ENST00000556422 LRP2P98164 4655 aa2.64□□□□□ -1.99
TMEM260-210ENST00000556422 KRTAP3-1Q9BYR8 98 aa2.63□□□□□ -1.99
TMEM260-210ENST00000556422 PCLOQ9Y6V0 5065 aa2.62□□□□□ -1.99
TMEM260-210ENST00000556422 XP32Q5T750 250 aa2.6□□□□□ -1.99
TMEM260-210ENST00000556422 COX6B2Q6YFQ2 88 aa2.59□□□□□ -1.99
TMEM260-210ENST00000556422 INE1O15225 51 aa2.56□□□□□ -2
TMEM260-210ENST00000556422 MUC17Q685J3 4493 aa2.52□□□□□ -2.01
TMEM260-210ENST00000556422 PP632Q6XCG6 107 aa2.51□□□□□ -2.01
TMEM260-210ENST00000556422 MUC2Q02817 5179 aa2.49□□□□□ -2.01
TMEM260-210ENST00000556422 S4R3F8 94 aa2.49□□□□□ -2.01
TMEM260-210ENST00000556422 HERC1Q15751 4861 aa2.48□□□□□ -2.01
TMEM260-210ENST00000556422 KRTAP9-9Q9BYP9 154 aa2.48□□□□□ -2.01
TMEM260-210ENST00000556422 KRTAP9-4Q9BYQ2 154 aa2.48□□□□□ -2.01
TMEM260-210ENST00000556422 KRTAP10-6P60371 365 aaPredicted RBP2.47□□□□□ -2.01
TMEM260-210ENST00000556422 KRTAP4-1Q9BYQ7 146 aa2.44□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP13-4Q3LI77 160 aa2.44□□□□□ -2.02
TMEM260-210ENST00000556422 UBR4Q5T4S7 5183 aa2.44□□□□□ -2.02
TMEM260-210ENST00000556422 LCE4AQ5TA78 99 aa2.43□□□□□ -2.02
TMEM260-210ENST00000556422 HMCN2Q8NDA2 5059 aa2.43□□□□□ -2.02
TMEM260-210ENST00000556422 LOC100996750A0A140TA64 210 aa2.42□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP4-6Q9BYQ5 205 aa2.42□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP19-1Q8IUB9 90 aa2.42□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP19-2Q3LHN2 52 aa2.42□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP9-6A0A140TA67 174 aa2.41□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP9-7A8MTY7 169 aa2.41□□□□□ -2.02
TMEM260-210ENST00000556422 KRTAP12-2P59991 146 aa2.41□□□□□ -2.02
TMEM260-210ENST00000556422 FLGP20930 4061 aaPredicted RBP2.4□□□□□ -2.03
TMEM260-210ENST00000556422 FAT4Q6V0I7 4981 aa2.37□□□□□ -2.03
TMEM260-210ENST00000556422 KRTAP4-12Q9BQ66 201 aa2.34□□□□□ -2.03
TMEM260-210ENST00000556422 RNF213Q63HN8 5207 aa2.34□□□□□ -2.04
TMEM260-210ENST00000556422 KRTAP12-1P59990 96 aa2.32□□□□□ -2.04
TMEM260-210ENST00000556422 KRTAP9-2Q9BYQ4 174 aa2.32□□□□□ -2.04
TMEM260-210ENST00000556422 M0QZ58 72 aa2.31□□□□□ -2.04
TMEM260-210ENST00000556422 KRTAP9-3Q9BYQ3 159 aa2.27□□□□□ -2.05
TMEM260-210ENST00000556422 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.27□□□□□ -2.05
TMEM260-210ENST00000556422 KRTAP4-8Q9BYQ9 185 aa2.25□□□□□ -2.05
TMEM260-210ENST00000556422 LCE5AQ5TCM9 118 aa2.23□□□□□ -2.05
TMEM260-210ENST00000556422 M0R2T5 61 aa2.23□□□□□ -2.05
TMEM260-210ENST00000556422 MT1HP80294 61 aa2.22□□□□□ -2.05
TMEM260-210ENST00000556422 CRCT1Q9UGL9 99 aa2.2□□□□□ -2.06
TMEM260-210ENST00000556422 SPRR2GQ9BYE4 73 aa2.17□□□□□ -2.06
TMEM260-210ENST00000556422 KRTAP9-8Q9BYQ0 159 aa2.17□□□□□ -2.06
TMEM260-210ENST00000556422 FSIP2Q5CZC0 6907 aa2.16□□□□□ -2.06
TMEM260-210ENST00000556422 MT1FP04733 61 aa2.16□□□□□ -2.06
TMEM260-210ENST00000556422 SPRR5A0A1B0GTR4 108 aa2.16□□□□□ -2.06
TMEM260-210ENST00000556422 MT2AP02795 61 aa2.16□□□□□ -2.06
TMEM260-210ENST00000556422 KRTAP19-4Q3LI73 84 aa2.13□□□□□ -2.07
TMEM260-210ENST00000556422 MUC5BQ9HC84 5762 aaPredicted RBP2.11□□□□□ -2.07
TMEM260-210ENST00000556422 KRTAP10-10P60014 251 aa2.11□□□□□ -2.07
TMEM260-210ENST00000556422 LCE3BQ5TA77 95 aa2.1□□□□□ -2.07
TMEM260-210ENST00000556422 TNP1P09430 55 aa2.09□□□□□ -2.07
TMEM260-210ENST00000556422 HMCN1Q96RW7 5635 aa2.08□□□□□ -2.08
TMEM260-210ENST00000556422 KRTAP19-8Q3LI54 63 aa2.08□□□□□ -2.08
TMEM260-210ENST00000556422 MT1BP07438 61 aa2.07□□□□□ -2.08
TMEM260-210ENST00000556422 USH2AO75445 5202 aa2.06□□□□□ -2.08
TMEM260-210ENST00000556422 KRTAP10-5P60370 271 aa2.04□□□□□ -2.08
TMEM260-210ENST00000556422 MT1XP80297 61 aa2.03□□□□□ -2.08
TMEM260-210ENST00000556422 LCE1AQ5T7P2 110 aa2□□□□□ -2.09
TMEM260-210ENST00000556422 LCE3AQ5TA76 89 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms