RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LINC01554Q52M75 96 aa6.95□□□□□ -1.3
SHMT2-222ENST00000555774 KMT2CQ8NEZ4 4911 aaKnown RBP6.93□□□□□ -1.3
SHMT2-222ENST00000555774 CSAG1Q6PB30 78 aa6.93□□□□□ -1.3
SHMT2-222ENST00000555774 K7ERS5 55 aa6.93□□□□□ -1.3
SHMT2-222ENST00000555774 KRTAP3-3Q9BYR6 98 aa6.92□□□□□ -1.3
SHMT2-222ENST00000555774 LRP1Q07954 4544 aaKnown RBP6.92□□□□□ -1.3
SHMT2-222ENST00000555774 S4R3F8 94 aa6.9□□□□□ -1.31
SHMT2-222ENST00000555774 RYR1P21817 5038 aa6.88□□□□□ -1.31
SHMT2-222ENST00000555774 KRTAP10-6P60371 365 aaPredicted RBP6.87□□□□□ -1.31
SHMT2-222ENST00000555774 MT1HL1P0DM35 61 aa6.84□□□□□ -1.31
SHMT2-222ENST00000555774 KRTAP3-2Q9BYR7 98 aa6.83□□□□□ -1.32
SHMT2-222ENST00000555774 KRTAP25-1Q3LHN0 102 aa6.81□□□□□ -1.32
SHMT2-222ENST00000555774 KRTAP17-1Q9BYP8 105 aa6.79□□□□□ -1.32
SHMT2-222ENST00000555774 A0A0A0MQY5 61 aa6.78□□□□□ -1.32
SHMT2-222ENST00000555774 TPRXLQ17RH7 258 aa6.77□□□□□ -1.33
SHMT2-222ENST00000555774 H3BS24 57 aa6.76□□□□□ -1.33
SHMT2-222ENST00000555774 KRTAP13-4Q3LI77 160 aa6.76□□□□□ -1.33
SHMT2-222ENST00000555774 ROMO1P60602 79 aa6.74□□□□□ -1.33
SHMT2-222ENST00000555774 RYR3Q15413 4870 aa6.73□□□□□ -1.33
SHMT2-222ENST00000555774 DMBT1Q9UGM3 2413 aaPredicted RBP6.73□□□□□ -1.33
SHMT2-222ENST00000555774 MYCBP2O75592 4640 aa6.72□□□□□ -1.33
SHMT2-222ENST00000555774 P0C880 135 aa6.7□□□□□ -1.34
SHMT2-222ENST00000555774 A0A0D9SG42 100 aa6.68□□□□□ -1.34
SHMT2-222ENST00000555774 KIAA1109Q2LD37 5005 aa6.65□□□□□ -1.34
SHMT2-222ENST00000555774 M0QZ58 72 aa6.6□□□□□ -1.35
SHMT2-222ENST00000555774 CRIPTQ9P021 101 aa6.56□□□□□ -1.36
SHMT2-222ENST00000555774 KRTAP12-2P59991 146 aa6.55□□□□□ -1.36
SHMT2-222ENST00000555774 KRTAP12-1P59990 96 aa6.54□□□□□ -1.36
SHMT2-222ENST00000555774 LPAP08519 4548 aa6.53□□□□□ -1.36
SHMT2-222ENST00000555774 LRP2P98164 4655 aa6.53□□□□□ -1.36
SHMT2-222ENST00000555774 SEC61BP60468 96 aaKnown RBP6.51□□□□□ -1.37
SHMT2-222ENST00000555774 SPINT4Q6UDR6 99 aa6.49□□□□□ -1.37
SHMT2-222ENST00000555774 EPPK1P58107 5090 aaKnown RBP6.48□□□□□ -1.37
SHMT2-222ENST00000555774 KRTAP4-5Q9BYR2 181 aa6.44□□□□□ -1.38
SHMT2-222ENST00000555774 C10orf95Q9H7T3 257 aa6.38□□□□□ -1.39
SHMT2-222ENST00000555774 ABCA13Q86UQ4 5058 aa6.38□□□□□ -1.39
SHMT2-222ENST00000555774 R4GN34 69 aa6.38□□□□□ -1.39
SHMT2-222ENST00000555774 MUC17Q685J3 4493 aa6.37□□□□□ -1.39
SHMT2-222ENST00000555774 KRTAP4-1Q9BYQ7 146 aa6.32□□□□□ -1.4
SHMT2-222ENST00000555774 KRTAP19-2Q3LHN2 52 aa6.26□□□□□ -1.41
SHMT2-222ENST00000555774 BIRC6Q9NR09 4857 aa6.26□□□□□ -1.41
SHMT2-222ENST00000555774 LORP23490 312 aaPredicted RBP6.22□□□□□ -1.41
SHMT2-222ENST00000555774 KRTAP15-1Q3LI76 137 aa6.19□□□□□ -1.42
SHMT2-222ENST00000555774 HERC2O95714 4834 aa6.17□□□□□ -1.42
SHMT2-222ENST00000555774 FLGP20930 4061 aaPredicted RBP6.05□□□□□ -1.44
SHMT2-222ENST00000555774 CAMK2N1Q7Z7J9 78 aa6.05□□□□□ -1.44
SHMT2-222ENST00000555774 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
SHMT2-222ENST00000555774 HERC1Q15751 4861 aa6.02□□□□□ -1.45
SHMT2-222ENST00000555774 NDUFAF8A1L188 74 aa5.97□□□□□ -1.45
SHMT2-222ENST00000555774 PLAC4Q8WY50 150 aa5.94□□□□□ -1.46
SHMT2-222ENST00000555774 PCLOQ9Y6V0 5065 aa5.91□□□□□ -1.46
SHMT2-222ENST00000555774 HMCN2Q8NDA2 5059 aa5.9□□□□□ -1.47
SHMT2-222ENST00000555774 KRTAP23-1A1A580 65 aa5.88□□□□□ -1.47
SHMT2-222ENST00000555774 LCE2CQ5TA81 110 aa5.87□□□□□ -1.47
SHMT2-222ENST00000555774 TNP1P09430 55 aa5.86□□□□□ -1.47
SHMT2-222ENST00000555774 MUC2Q02817 5179 aa5.86□□□□□ -1.47
SHMT2-222ENST00000555774 SPRR2GQ9BYE4 73 aa5.82□□□□□ -1.48
SHMT2-222ENST00000555774 KRTAP19-1Q8IUB9 90 aa5.74□□□□□ -1.49
SHMT2-222ENST00000555774 MT1HP80294 61 aa5.72□□□□□ -1.49
SHMT2-222ENST00000555774 M0R2T5 61 aa5.71□□□□□ -1.49
SHMT2-222ENST00000555774 LUZP6Q538Z0 58 aa5.68□□□□□ -1.5
SHMT2-222ENST00000555774 MT2AP02795 61 aa5.63□□□□□ -1.51
SHMT2-222ENST00000555774 FAT4Q6V0I7 4981 aa5.62□□□□□ -1.51
SHMT2-222ENST00000555774 MT1FP04733 61 aa5.62□□□□□ -1.51
SHMT2-222ENST00000555774 KRTAP10-10P60014 251 aa5.61□□□□□ -1.51
SHMT2-222ENST00000555774 RNF213Q63HN8 5207 aa5.61□□□□□ -1.51
SHMT2-222ENST00000555774 SPRR5A0A1B0GTR4 108 aa5.59□□□□□ -1.51
SHMT2-222ENST00000555774 KRTAP9-8Q9BYQ0 159 aa5.59□□□□□ -1.51
SHMT2-222ENST00000555774 KRTAP19-8Q3LI54 63 aa5.58□□□□□ -1.52
SHMT2-222ENST00000555774 LCE2DQ5TA82 110 aaPredicted RBP5.51□□□□□ -1.53
SHMT2-222ENST00000555774 LCE3AQ5TA76 89 aa5.5□□□□□ -1.53
SHMT2-222ENST00000555774 UBR4Q5T4S7 5183 aa5.5□□□□□ -1.53
SHMT2-222ENST00000555774 MT1BP07438 61 aa5.45□□□□□ -1.54
SHMT2-222ENST00000555774 KRTAP8-1Q8IUC2 63 aa5.43□□□□□ -1.54
SHMT2-222ENST00000555774 KRTAP10-5P60370 271 aa5.42□□□□□ -1.54
SHMT2-222ENST00000555774 MT1XP80297 61 aa5.41□□□□□ -1.54
SHMT2-222ENST00000555774 KRTAP9-3Q9BYQ3 159 aa5.36□□□□□ -1.55
SHMT2-222ENST00000555774 KRTAP10-12P60413 245 aa5.32□□□□□ -1.56
SHMT2-222ENST00000555774 PRO2289Q9P1D8 64 aa5.28□□□□□ -1.56
SHMT2-222ENST00000555774 KRTAP12-3P60328 96 aa5.26□□□□□ -1.57
SHMT2-222ENST00000555774 KRTAP10-7P60409 375 aaPredicted RBP5.22□□□□□ -1.57
SHMT2-222ENST00000555774 LCE2AQ5TA79 106 aaPredicted RBP5.15□□□□□ -1.58
SHMT2-222ENST00000555774 LCE2BO14633 110 aa5.11□□□□□ -1.59
SHMT2-222ENST00000555774 KRTAP19-5Q3LI72 72 aa5.02□□□□□ -1.61
SHMT2-222ENST00000555774 LCE3CQ5T5A8 94 aa4.96□□□□□ -1.61
SHMT2-222ENST00000555774 INE1O15225 51 aa4.95□□□□□ -1.62
SHMT2-222ENST00000555774 KRTAP19-4Q3LI73 84 aa4.87□□□□□ -1.63
SHMT2-222ENST00000555774 KRTAP4-8A0A0G2JLE6 195 aa4.85□□□□□ -1.63
SHMT2-222ENST00000555774 KRTAP4-8Q9BYQ9 185 aa4.85□□□□□ -1.63
SHMT2-222ENST00000555774 USH2AO75445 5202 aa4.83□□□□□ -1.64
SHMT2-222ENST00000555774 KRTAP19-7Q3SYF9 63 aa4.81□□□□□ -1.64
SHMT2-222ENST00000555774 KMT2DO14686 5537 aa4.74□□□□□ -1.65
SHMT2-222ENST00000555774 KRTAP9-2Q9BYQ4 174 aa4.73□□□□□ -1.65
SHMT2-222ENST00000555774 KRTAP9-6A8MVA2 160 aa4.71□□□□□ -1.66
SHMT2-222ENST00000555774 MT1EP04732 61 aa4.7□□□□□ -1.66
SHMT2-222ENST00000555774 MT1LQ93083 61 aa4.69□□□□□ -1.66
SHMT2-222ENST00000555774 KRTAP19-6Q3LI70 58 aa4.67□□□□□ -1.66
SHMT2-222ENST00000555774 SSPOA2VEC9 5147 aa4.65□□□□□ -1.66
SHMT2-222ENST00000555774 KRTAP2-3P0C7H8 128 aa4.63□□□□□ -1.67
SHMT2-222ENST00000555774 KRTAP2-4Q9BYR9 128 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms