RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 COX6B2Q6YFQ2 88 aa7.29□□□□□ -1.24
SHMT2-217ENST00000555116 LOC101927531A0A1B0GV80 90 aa7.28□□□□□ -1.24
SHMT2-217ENST00000555116 A8MUN3 132 aa7.28□□□□□ -1.24
SHMT2-217ENST00000555116 Q5VV11 94 aa7.24□□□□□ -1.25
SHMT2-217ENST00000555116 FLGP20930 4061 aaPredicted RBP7.23□□□□□ -1.25
SHMT2-217ENST00000555116 HRES1P13985 223 aa7.23□□□□□ -1.25
SHMT2-217ENST00000555116 COA5Q86WW8 74 aa7.23□□□□□ -1.25
SHMT2-217ENST00000555116 CHKB-CPT1BH3BT56 60 aa7.21□□□□□ -1.25
SHMT2-217ENST00000555116 PMAIP1Q13794 54 aa7.21□□□□□ -1.25
SHMT2-217ENST00000555116 PRR15LQ9BU68 103 aa7.21□□□□□ -1.25
SHMT2-217ENST00000555116 LCE2BO14633 110 aa7.19□□□□□ -1.26
SHMT2-217ENST00000555116 SPINK7P58062 85 aa7.19□□□□□ -1.26
SHMT2-217ENST00000555116 IGKV2-30P06310 120 aa7.17□□□□□ -1.26
SHMT2-217ENST00000555116 M0R2T5 61 aa7.15□□□□□ -1.27
SHMT2-217ENST00000555116 KRTAP10-6P60371 365 aaPredicted RBP7.14□□□□□ -1.27
SHMT2-217ENST00000555116 RBM12B-AS1Q9P1G2 102 aa7.14□□□□□ -1.27
SHMT2-217ENST00000555116 LINC01558Q9Y6Z2 57 aa7.14□□□□□ -1.27
SHMT2-217ENST00000555116 LORP23490 312 aaPredicted RBP7.13□□□□□ -1.27
SHMT2-217ENST00000555116 A6NED7 52 aa7.13□□□□□ -1.27
SHMT2-217ENST00000555116 SEC61GP60059 68 aa7.11□□□□□ -1.27
SHMT2-217ENST00000555116 IGKV2D-30A0A075B6S6 120 aa7.1□□□□□ -1.27
SHMT2-217ENST00000555116 KRTAP9-2Q9BYQ4 174 aa7.1□□□□□ -1.27
SHMT2-217ENST00000555116 CDC42SE1Q9NRR8 79 aa7.08□□□□□ -1.28
SHMT2-217ENST00000555116 DMAC1Q96GE9 116 aa7.06□□□□□ -1.28
SHMT2-217ENST00000555116 SPTSSBQ8NFR3 76 aa7.05□□□□□ -1.28
SHMT2-217ENST00000555116 ACYP2P14621 99 aa7.04□□□□□ -1.28
SHMT2-217ENST00000555116 LCA10Q71F78 164 aa7.04□□□□□ -1.28
SHMT2-217ENST00000555116 C7orf65Q6ZTY9 151 aa7.03□□□□□ -1.28
SHMT2-217ENST00000555116 A8MU10 97 aa7.02□□□□□ -1.28
SHMT2-217ENST00000555116 KTN1-AS1Q86SY8 53 aa7.02□□□□□ -1.28
SHMT2-217ENST00000555116 KRTAP9-8Q9BYQ0 159 aa6.96□□□□□ -1.29
SHMT2-217ENST00000555116 A6NN06 94 aa6.96□□□□□ -1.3
SHMT2-217ENST00000555116 H1FX-AS1Q4G0G2 97 aa6.92□□□□□ -1.3
SHMT2-217ENST00000555116 MT2AP02795 61 aa6.88□□□□□ -1.31
SHMT2-217ENST00000555116 A0A1B0GU69 56 aa6.85□□□□□ -1.31
SHMT2-217ENST00000555116 KRTAP3-1Q9BYR8 98 aa6.83□□□□□ -1.32
SHMT2-217ENST00000555116 MT1FP04733 61 aa6.83□□□□□ -1.32
SHMT2-217ENST00000555116 KRTAP9-6A0A140TA67 174 aa6.79□□□□□ -1.32
SHMT2-217ENST00000555116 SPATA8Q6RVD6 105 aa6.78□□□□□ -1.32
SHMT2-217ENST00000555116 KRTAP10-10P60014 251 aa6.77□□□□□ -1.33
SHMT2-217ENST00000555116 UQCR11O14957 56 aa6.77□□□□□ -1.33
SHMT2-217ENST00000555116 CRCT1Q9UGL9 99 aa6.75□□□□□ -1.33
SHMT2-217ENST00000555116 MIR22HGQ0VDD5 57 aa6.74□□□□□ -1.33
SHMT2-217ENST00000555116 KRTAP9-3Q9BYQ3 159 aa6.74□□□□□ -1.33
SHMT2-217ENST00000555116 S4R3F8 94 aa6.71□□□□□ -1.34
SHMT2-217ENST00000555116 FSIP2Q5CZC0 6907 aa6.68□□□□□ -1.34
SHMT2-217ENST00000555116 CSAG1Q6PB30 78 aa6.64□□□□□ -1.35
SHMT2-217ENST00000555116 USH2AO75445 5202 aa6.58□□□□□ -1.36
SHMT2-217ENST00000555116 PRAC1Q96KF2 57 aa6.57□□□□□ -1.36
SHMT2-217ENST00000555116 ADM2Q7Z4H4 148 aa6.52□□□□□ -1.37
SHMT2-217ENST00000555116 LINC01554Q52M75 96 aa6.51□□□□□ -1.37
SHMT2-217ENST00000555116 SSPOA2VEC9 5147 aa6.49□□□□□ -1.37
SHMT2-217ENST00000555116 KRTAP19-1Q8IUB9 90 aa6.47□□□□□ -1.37
SHMT2-217ENST00000555116 A0A1B0GU33 70 aa6.47□□□□□ -1.37
SHMT2-217ENST00000555116 H0YAA0 97 aa6.43□□□□□ -1.38
SHMT2-217ENST00000555116 SPRR2GQ9BYE4 73 aa6.41□□□□□ -1.38
SHMT2-217ENST00000555116 KRTAP19-6Q3LI70 58 aa6.39□□□□□ -1.39
SHMT2-217ENST00000555116 K7ERS5 55 aa6.37□□□□□ -1.39
SHMT2-217ENST00000555116 KRTAP19-8Q3LI54 63 aa6.35□□□□□ -1.39
SHMT2-217ENST00000555116 CRIPTQ9P021 101 aa6.35□□□□□ -1.39
SHMT2-217ENST00000555116 A0A0A0MQY5 61 aa6.34□□□□□ -1.39
SHMT2-217ENST00000555116 MT1BP07438 61 aa6.33□□□□□ -1.4
SHMT2-217ENST00000555116 FCGBPQ9Y6R7 5405 aaPredicted RBP6.33□□□□□ -1.4
SHMT2-217ENST00000555116 P0C880 135 aa6.32□□□□□ -1.4
SHMT2-217ENST00000555116 KRTAP25-1Q3LHN0 102 aa6.29□□□□□ -1.4
SHMT2-217ENST00000555116 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.28□□□□□ -1.4
SHMT2-217ENST00000555116 KRTAP13-4Q3LI77 160 aa6.28□□□□□ -1.4
SHMT2-217ENST00000555116 A0A0D9SG42 100 aa6.17□□□□□ -1.42
SHMT2-217ENST00000555116 KRTAP23-1A1A580 65 aa6.17□□□□□ -1.42
SHMT2-217ENST00000555116 ROMO1P60602 79 aa6.16□□□□□ -1.42
SHMT2-217ENST00000555116 M0QZ58 72 aa6.14□□□□□ -1.43
SHMT2-217ENST00000555116 R4GN34 69 aa6.14□□□□□ -1.43
SHMT2-217ENST00000555116 KRTAP9-7A8MTY7 169 aa6.13□□□□□ -1.43
SHMT2-217ENST00000555116 KRTAP10-5P60370 271 aa6.13□□□□□ -1.43
SHMT2-217ENST00000555116 KRTAP12-2P59991 146 aa6.05□□□□□ -1.44
SHMT2-217ENST00000555116 MACF1Q9UPN3 7388 aaKnown RBP6.04□□□□□ -1.44
SHMT2-217ENST00000555116 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
SHMT2-217ENST00000555116 PLAC4Q8WY50 150 aa6.02□□□□□ -1.45
SHMT2-217ENST00000555116 SPINT4Q6UDR6 99 aa5.99□□□□□ -1.45
SHMT2-217ENST00000555116 MT1XP80297 61 aa5.98□□□□□ -1.45
SHMT2-217ENST00000555116 SYNE2Q8WXH0 6885 aaKnown RBP5.94□□□□□ -1.46
SHMT2-217ENST00000555116 KRTAP6-3Q3LI67 103 aa5.94□□□□□ -1.46
SHMT2-217ENST00000555116 PRO2289Q9P1D8 64 aa5.93□□□□□ -1.46
SHMT2-217ENST00000555116 C10orf95Q9H7T3 257 aa5.81□□□□□ -1.48
SHMT2-217ENST00000555116 KRTAP5-9P26371 169 aa5.75□□□□□ -1.49
SHMT2-217ENST00000555116 KRTAP15-1Q3LI76 137 aa5.73□□□□□ -1.49
SHMT2-217ENST00000555116 KRTAP10-7P60409 375 aaPredicted RBP5.71□□□□□ -1.5
SHMT2-217ENST00000555116 CAMK2N1Q7Z7J9 78 aa5.69□□□□□ -1.5
SHMT2-217ENST00000555116 KRTAP10-12P60413 245 aa5.68□□□□□ -1.5
SHMT2-217ENST00000555116 KMT2DO14686 5537 aa5.66□□□□□ -1.5
SHMT2-217ENST00000555116 KRTAP4-8A0A0G2JLE6 195 aa5.65□□□□□ -1.5
SHMT2-217ENST00000555116 KRTAP4-8Q9BYQ9 185 aa5.65□□□□□ -1.5
SHMT2-217ENST00000555116 KRTAP8-1Q8IUC2 63 aa5.64□□□□□ -1.51
SHMT2-217ENST00000555116 NEBP20929 6669 aa5.61□□□□□ -1.51
SHMT2-217ENST00000555116 NDUFAF8A1L188 74 aa5.6□□□□□ -1.51
SHMT2-217ENST00000555116 SPRR2FQ96RM1 72 aa5.6□□□□□ -1.51
SHMT2-217ENST00000555116 MUC12Q9UKN1 5478 aa5.6□□□□□ -1.51
SHMT2-217ENST00000555116 PP632Q6XCG6 107 aa5.49□□□□□ -1.53
SHMT2-217ENST00000555116 SPRR2EP22531 72 aa5.48□□□□□ -1.53
SHMT2-217ENST00000555116 SPRR2BP35325 72 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms