RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 LCE4AQ5TA78 99 aa5.4□□□□□ -1.54
CCDC88C-208ENST00000554165 TRAV22A0A0B4J277 110 aa5.39□□□□□ -1.55
CCDC88C-208ENST00000554165 LINC00643Q86TS7 51 aa5.39□□□□□ -1.55
CCDC88C-208ENST00000554165 S4R3F8 94 aa5.38□□□□□ -1.55
CCDC88C-208ENST00000554165 LCA10Q71F78 164 aa5.37□□□□□ -1.55
CCDC88C-208ENST00000554165 H0Y9P7 68 aa5.35□□□□□ -1.55
CCDC88C-208ENST00000554165 UQCRQO14949 82 aa5.35□□□□□ -1.55
CCDC88C-208ENST00000554165 LOC101927531A0A1B0GV80 90 aa5.34□□□□□ -1.55
CCDC88C-208ENST00000554165 KRTAP4-11Q9BYQ6 195 aa5.33□□□□□ -1.56
CCDC88C-208ENST00000554165 CSAG1Q6PB30 78 aa5.32□□□□□ -1.56
CCDC88C-208ENST00000554165 FAM236AA0A1B0GUQ0 79 aa5.29□□□□□ -1.56
CCDC88C-208ENST00000554165 FAM236BA0A1B0GV22 79 aa5.29□□□□□ -1.56
CCDC88C-208ENST00000554165 ATOX1O00244 68 aa5.28□□□□□ -1.56
CCDC88C-208ENST00000554165 KLKP1Q107X0 134 aa5.28□□□□□ -1.56
CCDC88C-208ENST00000554165 KRTAP19-6Q3LI70 58 aa5.28□□□□□ -1.56
CCDC88C-208ENST00000554165 LINC00208Q96KT6 92 aa5.28□□□□□ -1.56
CCDC88C-208ENST00000554165 OCR1Q9BZK8 76 aa5.28□□□□□ -1.56
CCDC88C-208ENST00000554165 J3QR89 54 aa5.24□□□□□ -1.57
CCDC88C-208ENST00000554165 KRTAP9-7A8MTY7 169 aa5.23□□□□□ -1.57
CCDC88C-208ENST00000554165 KRTAP19-4Q3LI73 84 aa5.23□□□□□ -1.57
CCDC88C-208ENST00000554165 MT1BP07438 61 aa5.2□□□□□ -1.58
CCDC88C-208ENST00000554165 MP68P56378 58 aa5.2□□□□□ -1.58
CCDC88C-208ENST00000554165 SPRR2GQ9BYE4 73 aa5.19□□□□□ -1.58
CCDC88C-208ENST00000554165 MACF1Q9UPN3 7388 aaKnown RBP5.19□□□□□ -1.58
CCDC88C-208ENST00000554165 MT-ATP8P03928 68 aa5.17□□□□□ -1.58
CCDC88C-208ENST00000554165 SCGB1A1P11684 91 aa5.17□□□□□ -1.58
CCDC88C-208ENST00000554165 LCE5AQ5TCM9 118 aa5.17□□□□□ -1.58
CCDC88C-208ENST00000554165 NDUFC1O43677 76 aa5.16□□□□□ -1.58
CCDC88C-208ENST00000554165 KRTAP19-8Q3LI54 63 aa5.16□□□□□ -1.58
CCDC88C-208ENST00000554165 SYNE2Q8WXH0 6885 aaKnown RBP5.15□□□□□ -1.58
CCDC88C-208ENST00000554165 A8MUN3 132 aa5.14□□□□□ -1.59
CCDC88C-208ENST00000554165 Q5VV11 94 aa5.13□□□□□ -1.59
CCDC88C-208ENST00000554165 IMUPQ9GZP8 106 aa5.12□□□□□ -1.59
CCDC88C-208ENST00000554165 H3BPC8 53 aa5.11□□□□□ -1.59
CCDC88C-208ENST00000554165 K7ERU9 68 aa5.1□□□□□ -1.59
CCDC88C-208ENST00000554165 ADM2Q7Z4H4 148 aa5.1□□□□□ -1.59
CCDC88C-208ENST00000554165 H0YAA0 97 aa5.09□□□□□ -1.59
CCDC88C-208ENST00000554165 PCP4P48539 62 aa5.09□□□□□ -1.59
CCDC88C-208ENST00000554165 DMAC1Q96GE9 116 aa5.07□□□□□ -1.6
CCDC88C-208ENST00000554165 A6NN06 94 aa5.06□□□□□ -1.6
CCDC88C-208ENST00000554165 CRIPTQ9P021 101 aa5.06□□□□□ -1.6
CCDC88C-208ENST00000554165 TRAV7A0A075B6U4 112 aa5.04□□□□□ -1.6
CCDC88C-208ENST00000554165 P0C880 135 aa5.03□□□□□ -1.6
CCDC88C-208ENST00000554165 KRTAP10-5P60370 271 aa5.03□□□□□ -1.6
CCDC88C-208ENST00000554165 SMIM20Q8N5G0 67 aa4.99□□□□□ -1.61
CCDC88C-208ENST00000554165 SNURFQ9Y675 71 aa4.98□□□□□ -1.61
CCDC88C-208ENST00000554165 KRTAP23-1A1A580 65 aa4.97□□□□□ -1.61
CCDC88C-208ENST00000554165 KRTAP6-3Q3LI67 103 aa4.97□□□□□ -1.61
CCDC88C-208ENST00000554165 ACYP2P14621 99 aa4.94□□□□□ -1.62
CCDC88C-208ENST00000554165 A0A0A0MQY5 61 aa4.93□□□□□ -1.62
CCDC88C-208ENST00000554165 R4GN34 69 aa4.92□□□□□ -1.62
CCDC88C-208ENST00000554165 M0QZ58 72 aa4.91□□□□□ -1.62
CCDC88C-208ENST00000554165 KRTAP5-3Q6L8H2 238 aa4.91□□□□□ -1.62
CCDC88C-208ENST00000554165 C20orf197Q8N268 126 aa4.91□□□□□ -1.62
CCDC88C-208ENST00000554165 SERP2Q8N6R1 65 aa4.89□□□□□ -1.63
CCDC88C-208ENST00000554165 MT1XP80297 61 aa4.88□□□□□ -1.63
CCDC88C-208ENST00000554165 MUC12Q9UKN1 5478 aa4.88□□□□□ -1.63
CCDC88C-208ENST00000554165 LINC01554Q52M75 96 aa4.87□□□□□ -1.63
CCDC88C-208ENST00000554165 KMT2DO14686 5537 aa4.86□□□□□ -1.63
CCDC88C-208ENST00000554165 PLAC4Q8WY50 150 aa4.86□□□□□ -1.63
CCDC88C-208ENST00000554165 NEBP20929 6669 aa4.86□□□□□ -1.63
CCDC88C-208ENST00000554165 CHKB-CPT1BH3BT56 60 aa4.85□□□□□ -1.63
CCDC88C-208ENST00000554165 SPANXA2-OT1Q8N9U9 137 aa4.83□□□□□ -1.64
CCDC88C-208ENST00000554165 SPTSSBQ8NFR3 76 aa4.82□□□□□ -1.64
CCDC88C-208ENST00000554165 MDN1Q9NU22 5596 aa4.81□□□□□ -1.64
CCDC88C-208ENST00000554165 PRO2289Q9P1D8 64 aa4.79□□□□□ -1.64
CCDC88C-208ENST00000554165 KRTAP5-9P26371 169 aa4.77□□□□□ -1.65
CCDC88C-208ENST00000554165 CYSTM1Q9H1C7 97 aa4.77□□□□□ -1.65
CCDC88C-208ENST00000554165 COX7CP15954 63 aa4.75□□□□□ -1.65
CCDC88C-208ENST00000554165 KRTAP13-4Q3LI77 160 aa4.74□□□□□ -1.65
CCDC88C-208ENST00000554165 COA5Q86WW8 74 aa4.74□□□□□ -1.65
CCDC88C-208ENST00000554165 H7BZZ5 65 aa4.7□□□□□ -1.66
CCDC88C-208ENST00000554165 KRTAP12-2P59991 146 aa4.69□□□□□ -1.66
CCDC88C-208ENST00000554165 KRTAP10-7P60409 375 aaPredicted RBP4.68□□□□□ -1.66
CCDC88C-208ENST00000554165 SPRR2FQ96RM1 72 aa4.67□□□□□ -1.66
CCDC88C-208ENST00000554165 KRTAP8-1Q8IUC2 63 aa4.66□□□□□ -1.66
CCDC88C-208ENST00000554165 ANAPC13Q9BS18 74 aa4.62□□□□□ -1.67
CCDC88C-208ENST00000554165 KRTAP10-12P60413 245 aa4.61□□□□□ -1.67
CCDC88C-208ENST00000554165 CCDC179H3BU77 68 aa4.59□□□□□ -1.67
CCDC88C-208ENST00000554165 SPRR2EP22531 72 aa4.59□□□□□ -1.67
CCDC88C-208ENST00000554165 SPRR2BP35325 72 aa4.59□□□□□ -1.67
CCDC88C-208ENST00000554165 SPRR2AP35326 72 aa4.59□□□□□ -1.67
CCDC88C-208ENST00000554165 A0A0D9SG42 100 aa4.58□□□□□ -1.68
CCDC88C-208ENST00000554165 SPATA8Q6RVD6 105 aa4.58□□□□□ -1.68
CCDC88C-208ENST00000554165 KRTAP20-1Q3LI63 56 aa4.57□□□□□ -1.68
CCDC88C-208ENST00000554165 SERP1Q9Y6X1 66 aa4.57□□□□□ -1.68
CCDC88C-208ENST00000554165 SEC61GP60059 68 aa4.56□□□□□ -1.68
CCDC88C-208ENST00000554165 A0A1B0GU33 70 aa4.54□□□□□ -1.68
CCDC88C-208ENST00000554165 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
CCDC88C-208ENST00000554165 CAMK2N1Q7Z7J9 78 aa4.54□□□□□ -1.68
CCDC88C-208ENST00000554165 KRTAP12-1P59990 96 aa4.48□□□□□ -1.69
CCDC88C-208ENST00000554165 SPINT4Q6UDR6 99 aa4.48□□□□□ -1.69
CCDC88C-208ENST00000554165 KRTAP2-3P0C7H8 128 aa4.47□□□□□ -1.69
CCDC88C-208ENST00000554165 KRTAP2-4Q9BYR9 128 aa4.47□□□□□ -1.69
CCDC88C-208ENST00000554165 A0A1B0GU69 56 aa4.46□□□□□ -1.7
CCDC88C-208ENST00000554165 A8MU10 97 aa4.44□□□□□ -1.7
CCDC88C-208ENST00000554165 SPRR2DP22532 72 aa4.42□□□□□ -1.7
CCDC88C-208ENST00000554165 ATP5EP56381 51 aaPredicted RBP4.39□□□□□ -1.71
CCDC88C-208ENST00000554165 SMIM26A0A096LP01 95 aa4.37□□□□□ -1.71
CCDC88C-208ENST00000554165 KRTAP19-7Q3SYF9 63 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms