RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 MIR22HGQ0VDD5 57 aa6.9□□□□□ -1.3
VIPAS39-206ENST00000553888 BIRC6Q9NR09 4857 aa6.89□□□□□ -1.31
VIPAS39-206ENST00000553888 A8MUU9 505 aa6.89□□□□□ -1.31
VIPAS39-206ENST00000553888 C20orf166-AS1Q96NR2 134 aa6.89□□□□□ -1.31
VIPAS39-206ENST00000553888 HRES1P13985 223 aa6.88□□□□□ -1.31
VIPAS39-206ENST00000553888 HERC2O95714 4834 aa6.87□□□□□ -1.31
VIPAS39-206ENST00000553888 LPAP08519 4548 aa6.85□□□□□ -1.31
VIPAS39-206ENST00000553888 LUZP6Q538Z0 58 aa6.83□□□□□ -1.32
VIPAS39-206ENST00000553888 COA5Q86WW8 74 aa6.82□□□□□ -1.32
VIPAS39-206ENST00000553888 LRP2P98164 4655 aa6.8□□□□□ -1.32
VIPAS39-206ENST00000553888 XP32Q5T750 250 aa6.79□□□□□ -1.32
VIPAS39-206ENST00000553888 NDUFAF8A1L188 74 aa6.76□□□□□ -1.33
VIPAS39-206ENST00000553888 DMAC1Q96GE9 116 aa6.74□□□□□ -1.33
VIPAS39-206ENST00000553888 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
VIPAS39-206ENST00000553888 ACYP2P14621 99 aa6.7□□□□□ -1.34
VIPAS39-206ENST00000553888 LINC01558Q9Y6Z2 57 aa6.7□□□□□ -1.34
VIPAS39-206ENST00000553888 PCLOQ9Y6V0 5065 aa6.69□□□□□ -1.34
VIPAS39-206ENST00000553888 KRTAP3-1Q9BYR8 98 aa6.66□□□□□ -1.34
VIPAS39-206ENST00000553888 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
VIPAS39-206ENST00000553888 HERC1Q15751 4861 aa6.6□□□□□ -1.35
VIPAS39-206ENST00000553888 KRTAP25-1Q3LHN0 102 aa6.58□□□□□ -1.36
VIPAS39-206ENST00000553888 K7ERS5 55 aa6.56□□□□□ -1.36
VIPAS39-206ENST00000553888 COX6B2Q6YFQ2 88 aa6.55□□□□□ -1.36
VIPAS39-206ENST00000553888 MUC17Q685J3 4493 aa6.49□□□□□ -1.37
VIPAS39-206ENST00000553888 HMCN2Q8NDA2 5059 aa6.45□□□□□ -1.38
VIPAS39-206ENST00000553888 KRTAP4-1Q9BYQ7 146 aa6.44□□□□□ -1.38
VIPAS39-206ENST00000553888 SPATA8Q6RVD6 105 aa6.43□□□□□ -1.38
VIPAS39-206ENST00000553888 MUC2Q02817 5179 aa6.43□□□□□ -1.38
VIPAS39-206ENST00000553888 SPINT4Q6UDR6 99 aa6.43□□□□□ -1.38
VIPAS39-206ENST00000553888 A0A1B0GU69 56 aa6.42□□□□□ -1.38
VIPAS39-206ENST00000553888 KRTAP3-3Q9BYR6 98 aa6.39□□□□□ -1.39
VIPAS39-206ENST00000553888 CRIPTQ9P021 101 aa6.36□□□□□ -1.39
VIPAS39-206ENST00000553888 S4R3F8 94 aa6.36□□□□□ -1.39
VIPAS39-206ENST00000553888 H1FX-AS1Q4G0G2 97 aa6.34□□□□□ -1.39
VIPAS39-206ENST00000553888 UQCR11O14957 56 aa6.32□□□□□ -1.4
VIPAS39-206ENST00000553888 KRTAP15-1Q3LI76 137 aa6.29□□□□□ -1.4
VIPAS39-206ENST00000553888 KRTAP19-2Q3LHN2 52 aa6.22□□□□□ -1.41
VIPAS39-206ENST00000553888 UBR4Q5T4S7 5183 aa6.22□□□□□ -1.41
VIPAS39-206ENST00000553888 KRTAP10-6P60371 365 aaPredicted RBP6.2□□□□□ -1.42
VIPAS39-206ENST00000553888 KRTAP3-2Q9BYR7 98 aa6.2□□□□□ -1.42
VIPAS39-206ENST00000553888 RNF213Q63HN8 5207 aa6.19□□□□□ -1.42
VIPAS39-206ENST00000553888 A0A1B0GU33 70 aa6.18□□□□□ -1.42
VIPAS39-206ENST00000553888 H0YAA0 97 aa6.17□□□□□ -1.42
VIPAS39-206ENST00000553888 FAT4Q6V0I7 4981 aa6.16□□□□□ -1.42
VIPAS39-206ENST00000553888 FLGP20930 4061 aaPredicted RBP6.13□□□□□ -1.43
VIPAS39-206ENST00000553888 KRTAP13-4Q3LI77 160 aa6.12□□□□□ -1.43
VIPAS39-206ENST00000553888 CAMK2N1Q7Z7J9 78 aa6.11□□□□□ -1.43
VIPAS39-206ENST00000553888 LCE2CQ5TA81 110 aa6.03□□□□□ -1.44
VIPAS39-206ENST00000553888 A0A0D9SG42 100 aa6.02□□□□□ -1.45
VIPAS39-206ENST00000553888 LORP23490 312 aaPredicted RBP5.99□□□□□ -1.45
VIPAS39-206ENST00000553888 M0QZ58 72 aa5.9□□□□□ -1.46
VIPAS39-206ENST00000553888 MT1HP80294 61 aa5.88□□□□□ -1.47
VIPAS39-206ENST00000553888 R4GN34 69 aa5.87□□□□□ -1.47
VIPAS39-206ENST00000553888 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
VIPAS39-206ENST00000553888 KRTAP12-2P59991 146 aa5.86□□□□□ -1.47
VIPAS39-206ENST00000553888 M0R2T5 61 aa5.85□□□□□ -1.47
VIPAS39-206ENST00000553888 C10orf95Q9H7T3 257 aa5.85□□□□□ -1.47
VIPAS39-206ENST00000553888 KRTAP12-1P59990 96 aa5.82□□□□□ -1.48
VIPAS39-206ENST00000553888 MT2AP02795 61 aa5.69□□□□□ -1.5
VIPAS39-206ENST00000553888 MT1FP04733 61 aa5.69□□□□□ -1.5
VIPAS39-206ENST00000553888 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
VIPAS39-206ENST00000553888 PRO2289Q9P1D8 64 aa5.65□□□□□ -1.5
VIPAS39-206ENST00000553888 KRTAP10-10P60014 251 aa5.65□□□□□ -1.51
VIPAS39-206ENST00000553888 KRTAP19-1Q8IUB9 90 aa5.62□□□□□ -1.51
VIPAS39-206ENST00000553888 SPRR2GQ9BYE4 73 aa5.58□□□□□ -1.52
VIPAS39-206ENST00000553888 LCE2AQ5TA79 106 aaPredicted RBP5.51□□□□□ -1.53
VIPAS39-206ENST00000553888 PLAC4Q8WY50 150 aa5.47□□□□□ -1.53
VIPAS39-206ENST00000553888 KRTAP9-3Q9BYQ3 159 aa5.46□□□□□ -1.54
VIPAS39-206ENST00000553888 MT1BP07438 61 aa5.4□□□□□ -1.55
VIPAS39-206ENST00000553888 KRTAP19-8Q3LI54 63 aa5.39□□□□□ -1.55
VIPAS39-206ENST00000553888 USH2AO75445 5202 aa5.37□□□□□ -1.55
VIPAS39-206ENST00000553888 LCE2BO14633 110 aa5.34□□□□□ -1.55
VIPAS39-206ENST00000553888 MT1XP80297 61 aa5.26□□□□□ -1.57
VIPAS39-206ENST00000553888 KRTAP10-5P60370 271 aa5.25□□□□□ -1.57
VIPAS39-206ENST00000553888 TNP1P09430 55 aa5.23□□□□□ -1.57
VIPAS39-206ENST00000553888 INE1O15225 51 aa5.15□□□□□ -1.58
VIPAS39-206ENST00000553888 FSIP2Q5CZC0 6907 aa5.14□□□□□ -1.59
VIPAS39-206ENST00000553888 KRTAP10-7P60409 375 aaPredicted RBP5.11□□□□□ -1.59
VIPAS39-206ENST00000553888 LCE3AQ5TA76 89 aa5.09□□□□□ -1.59
VIPAS39-206ENST00000553888 SSPOA2VEC9 5147 aa5.09□□□□□ -1.6
VIPAS39-206ENST00000553888 KMT2DO14686 5537 aa5.08□□□□□ -1.6
VIPAS39-206ENST00000553888 PP632Q6XCG6 107 aa5.07□□□□□ -1.6
VIPAS39-206ENST00000553888 KRTAP10-12P60413 245 aa5□□□□□ -1.61
VIPAS39-206ENST00000553888 LCE2DQ5TA82 110 aaPredicted RBP4.99□□□□□ -1.61
VIPAS39-206ENST00000553888 KRTAP4-8A0A0G2JLE6 195 aa4.92□□□□□ -1.62
VIPAS39-206ENST00000553888 KRTAP4-8Q9BYQ9 185 aa4.92□□□□□ -1.62
VIPAS39-206ENST00000553888 KRTAP8-1Q8IUC2 63 aa4.89□□□□□ -1.63
VIPAS39-206ENST00000553888 KRTAP19-6Q3LI70 58 aa4.86□□□□□ -1.63
VIPAS39-206ENST00000553888 KRTAP12-3P60328 96 aa4.83□□□□□ -1.64
VIPAS39-206ENST00000553888 FCGBPQ9Y6R7 5405 aaPredicted RBP4.81□□□□□ -1.64
VIPAS39-206ENST00000553888 KRTAP19-5Q3LI72 72 aa4.81□□□□□ -1.64
VIPAS39-206ENST00000553888 SPRR5A0A1B0GTR4 108 aa4.73□□□□□ -1.65
VIPAS39-206ENST00000553888 KRTAP9-2Q9BYQ4 174 aa4.71□□□□□ -1.66
VIPAS39-206ENST00000553888 KRTAP19-7Q3SYF9 63 aa4.69□□□□□ -1.66
VIPAS39-206ENST00000553888 MACF1Q9UPN3 7388 aaKnown RBP4.63□□□□□ -1.67
VIPAS39-206ENST00000553888 MUC12Q9UKN1 5478 aa4.6□□□□□ -1.67
VIPAS39-206ENST00000553888 MT1EP04732 61 aa4.57□□□□□ -1.68
VIPAS39-206ENST00000553888 KRTAP4-7Q9BYR0 210 aa4.54□□□□□ -1.68
VIPAS39-206ENST00000553888 CRCT1Q9UGL9 99 aa4.54□□□□□ -1.68
VIPAS39-206ENST00000553888 LCE3CQ5T5A8 94 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms