RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 CASC2Q6XLA1 102 aa2.8□□□□□ -1.96
VTI1B-202ENST00000553619 SRRM2Q9UQ35 2752 aaKnown RBP2.8□□□□□ -1.96
VTI1B-202ENST00000553619 PRR4Q16378 134 aa2.79□□□□□ -1.96
VTI1B-202ENST00000553619 Q8N9L7 120 aa2.79□□□□□ -1.96
VTI1B-202ENST00000553619 TMEM254Q8TBM7 123 aa2.79□□□□□ -1.96
VTI1B-202ENST00000553619 A0A087WVE0 104 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 A8MUN3 132 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 MP68P56378 58 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 WFDC13Q8IUB5 93 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 RETNLBQ9BQ08 111 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 MRPL34Q9BQ48 92 aaKnown RBP2.78□□□□□ -1.96
VTI1B-202ENST00000553619 TP53AIP1Q9HCN2 124 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 PKHD1L1Q86WI1 4243 aa2.78□□□□□ -1.96
VTI1B-202ENST00000553619 HSPG2P98160 4391 aa2.77□□□□□ -1.97
VTI1B-202ENST00000553619 MMP24-AS1A0A0U1RRL7 71 aa2.77□□□□□ -1.97
VTI1B-202ENST00000553619 UBR4Q5T4S7 5183 aa2.77□□□□□ -1.97
VTI1B-202ENST00000553619 C9orf92A6NGG3 77 aa2.75□□□□□ -1.97
VTI1B-202ENST00000553619 TPRXLQ17RH7 258 aa2.75□□□□□ -1.97
VTI1B-202ENST00000553619 LCE3CQ5T5A8 94 aa2.75□□□□□ -1.97
VTI1B-202ENST00000553619 KIAA1109Q2LD37 5005 aa2.74□□□□□ -1.97
VTI1B-202ENST00000553619 A6NN06 94 aa2.74□□□□□ -1.97
VTI1B-202ENST00000553619 LINC01554Q52M75 96 aa2.74□□□□□ -1.97
VTI1B-202ENST00000553619 NOTCH2NLQ7Z3S9 236 aa2.74□□□□□ -1.97
VTI1B-202ENST00000553619 FAT1Q14517 4588 aa2.74□□□□□ -1.97
VTI1B-202ENST00000553619 TRAV22A0A0B4J277 110 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 A8MUU9 505 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 H3BPC8 53 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 PSPHP1O15172 72 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 KRTAP13-3Q3SY46 172 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 Q75L30 129 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 C20orf166-AS1Q96NR2 134 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 CDC42SE1Q9NRR8 79 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 SNURFQ9Y675 71 aa2.73□□□□□ -1.97
VTI1B-202ENST00000553619 NDUFAF8A1L188 74 aa2.72□□□□□ -1.97
VTI1B-202ENST00000553619 KRTAP16-1A8MUX0 517 aa2.72□□□□□ -1.97
VTI1B-202ENST00000553619 CHKB-CPT1BH3BT56 60 aa2.72□□□□□ -1.97
VTI1B-202ENST00000553619 OCR1Q9BZK8 76 aa2.72□□□□□ -1.97
VTI1B-202ENST00000553619 HERC1Q15751 4861 aa2.71□□□□□ -1.98
VTI1B-202ENST00000553619 SPTSSBQ8NFR3 76 aa2.71□□□□□ -1.98
VTI1B-202ENST00000553619 RPL37P61927 97 aaKnown RBP2.7□□□□□ -1.98
VTI1B-202ENST00000553619 ZCCHC13Q8WW36 166 aaKnown RBP2.7□□□□□ -1.98
VTI1B-202ENST00000553619 ABCA13Q86UQ4 5058 aa2.7□□□□□ -1.98
VTI1B-202ENST00000553619 LOC101927531A0A1B0GV80 90 aa2.69□□□□□ -1.98
VTI1B-202ENST00000553619 A6NED7 52 aa2.69□□□□□ -1.98
VTI1B-202ENST00000553619 H0Y9P7 68 aa2.69□□□□□ -1.98
VTI1B-202ENST00000553619 C1orf64Q8NEQ6 169 aa2.69□□□□□ -1.98
VTI1B-202ENST00000553619 TNXBP22105 4242 aa2.69□□□□□ -1.98
VTI1B-202ENST00000553619 Q5VV11 94 aa2.68□□□□□ -1.98
VTI1B-202ENST00000553619 SPANXA2-OT1Q8N9U9 137 aa2.68□□□□□ -1.98
VTI1B-202ENST00000553619 LINC00208Q96KT6 92 aa2.68□□□□□ -1.98
VTI1B-202ENST00000553619 FAT3Q8TDW7 4589 aa2.67□□□□□ -1.98
VTI1B-202ENST00000553619 LRP1Q07954 4544 aaKnown RBP2.66□□□□□ -1.98
VTI1B-202ENST00000553619 Q5W150 140 aa2.66□□□□□ -1.98
VTI1B-202ENST00000553619 PCOTHQ58A44 107 aa2.64□□□□□ -1.99
VTI1B-202ENST00000553619 PRR15LQ9BU68 103 aa2.64□□□□□ -1.99
VTI1B-202ENST00000553619 SPINK7P58062 85 aa2.63□□□□□ -1.99
VTI1B-202ENST00000553619 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
VTI1B-202ENST00000553619 LINC01558Q9Y6Z2 57 aa2.62□□□□□ -1.99
VTI1B-202ENST00000553619 MYCBP2O75592 4640 aa2.59□□□□□ -1.99
VTI1B-202ENST00000553619 HRES1P13985 223 aa2.59□□□□□ -1.99
VTI1B-202ENST00000553619 ACYP2P14621 99 aa2.58□□□□□ -2
VTI1B-202ENST00000553619 COX6B2Q6YFQ2 88 aa2.57□□□□□ -2
VTI1B-202ENST00000553619 KRTAP4-3Q9BYR4 195 aa2.56□□□□□ -2
VTI1B-202ENST00000553619 H1FX-AS1Q4G0G2 97 aa2.54□□□□□ -2
VTI1B-202ENST00000553619 DMAC1Q96GE9 116 aa2.54□□□□□ -2
VTI1B-202ENST00000553619 PRAC1Q96KF2 57 aa2.54□□□□□ -2
VTI1B-202ENST00000553619 ROMO1P60602 79 aa2.53□□□□□ -2
VTI1B-202ENST00000553619 K7ERS5 55 aa2.52□□□□□ -2.01
VTI1B-202ENST00000553619 COA5Q86WW8 74 aa2.52□□□□□ -2.01
VTI1B-202ENST00000553619 KRTAP4-1Q9BYQ7 146 aa2.52□□□□□ -2.01
VTI1B-202ENST00000553619 A8MU10 97 aa2.51□□□□□ -2.01
VTI1B-202ENST00000553619 UQCR11O14957 56 aa2.51□□□□□ -2.01
VTI1B-202ENST00000553619 HMCN2Q8NDA2 5059 aa2.5□□□□□ -2.01
VTI1B-202ENST00000553619 MIR22HGQ0VDD5 57 aa2.5□□□□□ -2.01
VTI1B-202ENST00000553619 LCE3EQ5T5B0 92 aa2.5□□□□□ -2.01
VTI1B-202ENST00000553619 SPATA8Q6RVD6 105 aa2.5□□□□□ -2.01
VTI1B-202ENST00000553619 S4R3F8 94 aa2.49□□□□□ -2.01
VTI1B-202ENST00000553619 LCE3AQ5TA76 89 aa2.48□□□□□ -2.01
VTI1B-202ENST00000553619 CSAG1Q6PB30 78 aa2.48□□□□□ -2.01
VTI1B-202ENST00000553619 MUC17Q685J3 4493 aa2.48□□□□□ -2.01
VTI1B-202ENST00000553619 LPAP08519 4548 aa2.48□□□□□ -2.01
VTI1B-202ENST00000553619 KRTAP25-1Q3LHN0 102 aa2.45□□□□□ -2.02
VTI1B-202ENST00000553619 LRP2P98164 4655 aa2.45□□□□□ -2.02
VTI1B-202ENST00000553619 A0A1B0GU69 56 aa2.44□□□□□ -2.02
VTI1B-202ENST00000553619 M0R2T5 61 aa2.44□□□□□ -2.02
VTI1B-202ENST00000553619 KRTAP19-2Q3LHN2 52 aa2.44□□□□□ -2.02
VTI1B-202ENST00000553619 RNF213Q63HN8 5207 aa2.44□□□□□ -2.02
VTI1B-202ENST00000553619 KRTAP12-2P59991 146 aa2.42□□□□□ -2.02
VTI1B-202ENST00000553619 ADM2Q7Z4H4 148 aa2.42□□□□□ -2.02
VTI1B-202ENST00000553619 MUC2Q02817 5179 aa2.42□□□□□ -2.02
VTI1B-202ENST00000553619 LUZP6Q538Z0 58 aa2.41□□□□□ -2.02
VTI1B-202ENST00000553619 H0YAA0 97 aa2.4□□□□□ -2.03
VTI1B-202ENST00000553619 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.03
VTI1B-202ENST00000553619 CAMK2N1Q7Z7J9 78 aa2.4□□□□□ -2.03
VTI1B-202ENST00000553619 FAT4Q6V0I7 4981 aa2.4□□□□□ -2.03
VTI1B-202ENST00000553619 MT1HP80294 61 aa2.39□□□□□ -2.03
VTI1B-202ENST00000553619 CRCT1Q9UGL9 99 aa2.37□□□□□ -2.03
VTI1B-202ENST00000553619 CRIPTQ9P021 101 aa2.35□□□□□ -2.03
VTI1B-202ENST00000553619 A0A1B0GU33 70 aa2.34□□□□□ -2.03
VTI1B-202ENST00000553619 P0C880 135 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms