RNA–Protein interactions for RNA: ENST00000551492.5

NPAS3-210, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NPAS3, Length 2,817 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-210ENST00000551492 PKHD1L1Q86WI1 4243 aa11.82□□□□□ -0.52
NPAS3-210ENST00000551492 SPINK6Q6UWN8 80 aa11.78□□□□□ -0.52
NPAS3-210ENST00000551492 FAM229AH3BQW9 127 aa11.75□□□□□ -0.53
NPAS3-210ENST00000551492 ABCA13Q86UQ4 5058 aa11.73□□□□□ -0.53
NPAS3-210ENST00000551492 TYMSOSQ8TAI1 123 aa11.71□□□□□ -0.54
NPAS3-210ENST00000551492 FAT3Q8TDW7 4589 aa11.7□□□□□ -0.54
NPAS3-210ENST00000551492 KRTAP15-1Q3LI76 137 aa11.68□□□□□ -0.54
NPAS3-210ENST00000551492 HERC2O95714 4834 aa11.6□□□□□ -0.55
NPAS3-210ENST00000551492 IGKV2-30P06310 120 aa11.6□□□□□ -0.55
NPAS3-210ENST00000551492 BIRC6Q9NR09 4857 aa11.6□□□□□ -0.55
NPAS3-210ENST00000551492 TNXBP22105 4242 aa11.58□□□□□ -0.56
NPAS3-210ENST00000551492 TPRXLQ17RH7 258 aa11.57□□□□□ -0.56
NPAS3-210ENST00000551492 LUZP6Q538Z0 58 aa11.56□□□□□ -0.56
NPAS3-210ENST00000551492 IGKV2D-30A0A075B6S6 120 aa11.55□□□□□ -0.56
NPAS3-210ENST00000551492 Q8N1X5 172 aa11.55□□□□□ -0.56
NPAS3-210ENST00000551492 C10orf95Q9H7T3 257 aa11.51□□□□□ -0.57
NPAS3-210ENST00000551492 A0A1B0GU33 70 aa11.49□□□□□ -0.57
NPAS3-210ENST00000551492 PCLOQ9Y6V0 5065 aa11.47□□□□□ -0.57
NPAS3-210ENST00000551492 C9orf92A6NGG3 77 aa11.36□□□□□ -0.59
NPAS3-210ENST00000551492 H1FX-AS1Q4G0G2 97 aa11.36□□□□□ -0.59
NPAS3-210ENST00000551492 LPAP08519 4548 aa11.35□□□□□ -0.59
NPAS3-210ENST00000551492 K7ERS5 55 aa11.35□□□□□ -0.59
NPAS3-210ENST00000551492 MT1HL1P0DM35 61 aa11.33□□□□□ -0.6
NPAS3-210ENST00000551492 HERC1Q15751 4861 aa11.33□□□□□ -0.6
NPAS3-210ENST00000551492 KRTAP10-8P60410 259 aa11.32□□□□□ -0.6
NPAS3-210ENST00000551492 LRP2P98164 4655 aa11.23□□□□□ -0.61
NPAS3-210ENST00000551492 J3QL48 77 aa11.12□□□□□ -0.63
NPAS3-210ENST00000551492 COX6B2Q6YFQ2 88 aa11.12□□□□□ -0.63
NPAS3-210ENST00000551492 A0A0D9SG42 100 aa11.04□□□□□ -0.64
NPAS3-210ENST00000551492 RPL37P61927 97 aaKnown RBP10.99□□□□□ -0.65
NPAS3-210ENST00000551492 MUC2Q02817 5179 aa10.99□□□□□ -0.65
NPAS3-210ENST00000551492 RPS29P62273 56 aaKnown RBP10.95□□□□□ -0.66
NPAS3-210ENST00000551492 SEC61BP60468 96 aaKnown RBP10.91□□□□□ -0.66
NPAS3-210ENST00000551492 KRTAP13-4Q3LI77 160 aa10.88□□□□□ -0.67
NPAS3-210ENST00000551492 KRTAP3-1Q9BYR8 98 aa10.88□□□□□ -0.67
NPAS3-210ENST00000551492 XP32Q5T750 250 aa10.8□□□□□ -0.68
NPAS3-210ENST00000551492 RNF213Q63HN8 5207 aa10.75□□□□□ -0.69
NPAS3-210ENST00000551492 UBR4Q5T4S7 5183 aa10.74□□□□□ -0.69
NPAS3-210ENST00000551492 HMCN2Q8NDA2 5059 aa10.72□□□□□ -0.69
NPAS3-210ENST00000551492 S4R3F8 94 aa10.63□□□□□ -0.71
NPAS3-210ENST00000551492 KRTAP10-6P60371 365 aaPredicted RBP10.62□□□□□ -0.71
NPAS3-210ENST00000551492 KRTAP12-2P59991 146 aa10.61□□□□□ -0.71
NPAS3-210ENST00000551492 KRTAP3-2Q9BYR7 98 aa10.57□□□□□ -0.72
NPAS3-210ENST00000551492 PLAC4Q8WY50 150 aa10.5□□□□□ -0.73
NPAS3-210ENST00000551492 KRTAP4-1Q9BYQ7 146 aa10.47□□□□□ -0.73
NPAS3-210ENST00000551492 FAT4Q6V0I7 4981 aa10.47□□□□□ -0.73
NPAS3-210ENST00000551492 MUC17Q685J3 4493 aa10.35□□□□□ -0.75
NPAS3-210ENST00000551492 KRTAP12-1P59990 96 aa10.32□□□□□ -0.76
NPAS3-210ENST00000551492 KRTAP3-3Q9BYR6 98 aa10.26□□□□□ -0.77
NPAS3-210ENST00000551492 CAMK2N1Q7Z7J9 78 aa10.02□□□□□ -0.8
NPAS3-210ENST00000551492 KRTAP19-2Q3LHN2 52 aa9.9□□□□□ -0.82
NPAS3-210ENST00000551492 PRO2289Q9P1D8 64 aa9.83□□□□□ -0.84
NPAS3-210ENST00000551492 FLGP20930 4061 aaPredicted RBP9.81□□□□□ -0.84
NPAS3-210ENST00000551492 LCE2CQ5TA81 110 aa9.76□□□□□ -0.85
NPAS3-210ENST00000551492 M0R2T5 61 aa9.67□□□□□ -0.86
NPAS3-210ENST00000551492 R4GN34 69 aa9.63□□□□□ -0.87
NPAS3-210ENST00000551492 M0QZ58 72 aa9.62□□□□□ -0.87
NPAS3-210ENST00000551492 MT1HP80294 61 aa9.57□□□□□ -0.88
NPAS3-210ENST00000551492 LORP23490 312 aaPredicted RBP9.55□□□□□ -0.88
NPAS3-210ENST00000551492 PP632Q6XCG6 107 aa9.37□□□□□ -0.91
NPAS3-210ENST00000551492 SPRR5A0A1B0GTR4 108 aa9.37□□□□□ -0.91
NPAS3-210ENST00000551492 FSIP2Q5CZC0 6907 aa9.32□□□□□ -0.92
NPAS3-210ENST00000551492 USH2AO75445 5202 aa9.26□□□□□ -0.93
NPAS3-210ENST00000551492 INE1O15225 51 aa9.23□□□□□ -0.93
NPAS3-210ENST00000551492 MT1FP04733 61 aa9.22□□□□□ -0.93
NPAS3-210ENST00000551492 KRTAP10-10P60014 251 aa9.22□□□□□ -0.93
NPAS3-210ENST00000551492 KRTAP9-8Q9BYQ0 159 aa9.19□□□□□ -0.94
NPAS3-210ENST00000551492 MT2AP02795 61 aa9.18□□□□□ -0.94
NPAS3-210ENST00000551492 LCE2AQ5TA79 106 aaPredicted RBP9.11□□□□□ -0.95
NPAS3-210ENST00000551492 KRTAP19-1Q8IUB9 90 aa8.95□□□□□ -0.98
NPAS3-210ENST00000551492 KRTAP9-3Q9BYQ3 159 aa8.82□□□□□ -1
NPAS3-210ENST00000551492 LCE2BO14633 110 aa8.76□□□□□ -1.01
NPAS3-210ENST00000551492 TNP1P09430 55 aa8.75□□□□□ -1.01
NPAS3-210ENST00000551492 SPRR2GQ9BYE4 73 aa8.74□□□□□ -1.01
NPAS3-210ENST00000551492 SSPOA2VEC9 5147 aa8.62□□□□□ -1.03
NPAS3-210ENST00000551492 MT1BP07438 61 aa8.62□□□□□ -1.03
NPAS3-210ENST00000551492 KMT2DO14686 5537 aa8.57□□□□□ -1.04
NPAS3-210ENST00000551492 KRTAP23-1A1A580 65 aa8.55□□□□□ -1.04
NPAS3-210ENST00000551492 KRTAP19-8Q3LI54 63 aa8.47□□□□□ -1.05
NPAS3-210ENST00000551492 MT1XP80297 61 aa8.34□□□□□ -1.07
NPAS3-210ENST00000551492 KRTAP10-5P60370 271 aa8.32□□□□□ -1.08
NPAS3-210ENST00000551492 LCE3AQ5TA76 89 aa8.3□□□□□ -1.08
NPAS3-210ENST00000551492 FCGBPQ9Y6R7 5405 aaPredicted RBP8.2□□□□□ -1.1
NPAS3-210ENST00000551492 KRTAP10-7P60409 375 aaPredicted RBP8.18□□□□□ -1.1
NPAS3-210ENST00000551492 KRTAP9-2Q9BYQ4 174 aa8.17□□□□□ -1.1
NPAS3-210ENST00000551492 KRTAP4-8A0A0G2JLE6 195 aa8.05□□□□□ -1.12
NPAS3-210ENST00000551492 KRTAP4-8Q9BYQ9 185 aa8.05□□□□□ -1.12
NPAS3-210ENST00000551492 LCE2DQ5TA82 110 aaPredicted RBP8.03□□□□□ -1.12
NPAS3-210ENST00000551492 MACF1Q9UPN3 7388 aaKnown RBP8□□□□□ -1.13
NPAS3-210ENST00000551492 KRTAP10-12P60413 245 aa7.99□□□□□ -1.13
NPAS3-210ENST00000551492 SYNE2Q8WXH0 6885 aaKnown RBP7.96□□□□□ -1.14
NPAS3-210ENST00000551492 KRTAP19-6Q3LI70 58 aa7.89□□□□□ -1.15
NPAS3-210ENST00000551492 KRTAP8-1Q8IUC2 63 aa7.85□□□□□ -1.15
NPAS3-210ENST00000551492 MUC12Q9UKN1 5478 aa7.84□□□□□ -1.15
NPAS3-210ENST00000551492 CRCT1Q9UGL9 99 aa7.8□□□□□ -1.16
NPAS3-210ENST00000551492 KRTAP12-3P60328 96 aa7.74□□□□□ -1.17
NPAS3-210ENST00000551492 KRTAP19-5Q3LI72 72 aa7.62□□□□□ -1.19
NPAS3-210ENST00000551492 DSTQ03001 7570 aaKnown RBP7.58□□□□□ -1.2
NPAS3-210ENST00000551492 MDN1Q9NU22 5596 aa7.5□□□□□ -1.21
NPAS3-210ENST00000551492 KRTAP9-6A0A140TA67 174 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms