RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 KRTAP7-1Q8IUC3 87 aa5.37□□□□□ -1.55
PTCH1-220ENST00000550136 Q6ZSA8 131 aa5.36□□□□□ -1.55
PTCH1-220ENST00000550136 DNAH2Q9P225 4427 aa5.36□□□□□ -1.55
PTCH1-220ENST00000550136 PKD1P98161 4303 aa5.35□□□□□ -1.55
PTCH1-220ENST00000550136 LCE5AQ5TCM9 118 aa5.35□□□□□ -1.55
PTCH1-220ENST00000550136 NBDYA0A0U1RRE5 68 aa5.35□□□□□ -1.55
PTCH1-220ENST00000550136 CIRBP-AS1Q8TBR5 109 aa5.34□□□□□ -1.55
PTCH1-220ENST00000550136 DMBT1Q9UGM3 2413 aaPredicted RBP5.34□□□□□ -1.55
PTCH1-220ENST00000550136 Q8N1X5 172 aa5.34□□□□□ -1.56
PTCH1-220ENST00000550136 PRLHP81277 87 aa5.33□□□□□ -1.56
PTCH1-220ENST00000550136 ANAPC11Q9NYG5 84 aa5.31□□□□□ -1.56
PTCH1-220ENST00000550136 TPRXLQ17RH7 258 aa5.3□□□□□ -1.56
PTCH1-220ENST00000550136 APLNQ9ULZ1 77 aa5.3□□□□□ -1.56
PTCH1-220ENST00000550136 IGKV2-30P06310 120 aa5.28□□□□□ -1.56
PTCH1-220ENST00000550136 KRTAP9-3Q9BYQ3 159 aa5.27□□□□□ -1.57
PTCH1-220ENST00000550136 APOBP04114 4563 aaKnown RBP5.26□□□□□ -1.57
PTCH1-220ENST00000550136 A0A1B0GU33 70 aa5.25□□□□□ -1.57
PTCH1-220ENST00000550136 DEFB135Q30KP9 77 aa5.25□□□□□ -1.57
PTCH1-220ENST00000550136 A0A096LNI7 61 aa5.24□□□□□ -1.57
PTCH1-220ENST00000550136 LRP1BQ9NZR2 4599 aa5.24□□□□□ -1.57
PTCH1-220ENST00000550136 H1FX-AS1Q4G0G2 97 aa5.22□□□□□ -1.57
PTCH1-220ENST00000550136 FLG2Q5D862 2391 aaPredicted RBP5.22□□□□□ -1.57
PTCH1-220ENST00000550136 IGKV2D-30A0A075B6S6 120 aa5.21□□□□□ -1.57
PTCH1-220ENST00000550136 DNAH5Q8TE73 4624 aa5.2□□□□□ -1.58
PTCH1-220ENST00000550136 HTN3P15516 51 aa5.19□□□□□ -1.58
PTCH1-220ENST00000550136 DEFB4AO15263 64 aa5.19□□□□□ -1.58
PTCH1-220ENST00000550136 MYCBP2O75592 4640 aa5.18□□□□□ -1.58
PTCH1-220ENST00000550136 SPINK1P00995 79 aa5.17□□□□□ -1.58
PTCH1-220ENST00000550136 HMCN2Q8NDA2 5059 aa5.15□□□□□ -1.58
PTCH1-220ENST00000550136 TYMSOSQ8TAI1 123 aa5.14□□□□□ -1.59
PTCH1-220ENST00000550136 C10orf95Q9H7T3 257 aa5.14□□□□□ -1.59
PTCH1-220ENST00000550136 SPART-AS1P0CW21 52 aa5.14□□□□□ -1.59
PTCH1-220ENST00000550136 LINC01556Q5JQF7 62 aa5.14□□□□□ -1.59
PTCH1-220ENST00000550136 UBE2DNLQ8IWF7 75 aa5.13□□□□□ -1.59
PTCH1-220ENST00000550136 CAMK2N1Q7Z7J9 78 aa5.13□□□□□ -1.59
PTCH1-220ENST00000550136 SRRM2Q9UQ35 2752 aaKnown RBP5.12□□□□□ -1.59
PTCH1-220ENST00000550136 VPS13BQ7Z7G8 4022 aa5.12□□□□□ -1.59
PTCH1-220ENST00000550136 Q5VSD8 79 aa5.12□□□□□ -1.59
PTCH1-220ENST00000550136 H3BNG1 76 aa5.11□□□□□ -1.59
PTCH1-220ENST00000550136 FAT1Q14517 4588 aa5.09□□□□□ -1.59
PTCH1-220ENST00000550136 RPL37P61927 97 aaKnown RBP5.07□□□□□ -1.6
PTCH1-220ENST00000550136 C14orf177Q52M58 125 aa5.07□□□□□ -1.6
PTCH1-220ENST00000550136 KRTAP10-2P60368 255 aa5.06□□□□□ -1.6
PTCH1-220ENST00000550136 SPINK6Q6UWN8 80 aa5.06□□□□□ -1.6
PTCH1-220ENST00000550136 KRTAP13-1Q8IUC0 172 aa5.05□□□□□ -1.6
PTCH1-220ENST00000550136 COX6B2Q6YFQ2 88 aa5.04□□□□□ -1.6
PTCH1-220ENST00000550136 SMR3BP02814 79 aaPredicted RBP4.99□□□□□ -1.61
PTCH1-220ENST00000550136 RNF213Q63HN8 5207 aa4.98□□□□□ -1.61
PTCH1-220ENST00000550136 KRTAP10-1P60331 282 aa4.96□□□□□ -1.62
PTCH1-220ENST00000550136 KRTAP1-5Q9BYS1 174 aa4.94□□□□□ -1.62
PTCH1-220ENST00000550136 Q6ZRN7 208 aaPredicted RBP4.92□□□□□ -1.62
PTCH1-220ENST00000550136 KRTAP5-3Q6L8H2 238 aa4.9□□□□□ -1.62
PTCH1-220ENST00000550136 PLAC4Q8WY50 150 aa4.9□□□□□ -1.63
PTCH1-220ENST00000550136 FAT3Q8TDW7 4589 aa4.89□□□□□ -1.63
PTCH1-220ENST00000550136 LRP1Q07954 4544 aaKnown RBP4.89□□□□□ -1.63
PTCH1-220ENST00000550136 PKHD1L1Q86WI1 4243 aa4.87□□□□□ -1.63
PTCH1-220ENST00000550136 DNAH8Q96JB1 4490 aa4.86□□□□□ -1.63
PTCH1-220ENST00000550136 PRO2289Q9P1D8 64 aa4.85□□□□□ -1.63
PTCH1-220ENST00000550136 LRP2P98164 4655 aa4.84□□□□□ -1.63
PTCH1-220ENST00000550136 S4R3F8 94 aa4.84□□□□□ -1.63
PTCH1-220ENST00000550136 A0A0D9SG42 100 aa4.84□□□□□ -1.64
PTCH1-220ENST00000550136 KRTAP10-4P60372 401 aaPredicted RBP4.82□□□□□ -1.64
PTCH1-220ENST00000550136 KRTAP13-4Q3LI77 160 aa4.82□□□□□ -1.64
PTCH1-220ENST00000550136 KRTAP3-1Q9BYR8 98 aa4.8□□□□□ -1.64
PTCH1-220ENST00000550136 MT1HL1P0DM35 61 aa4.78□□□□□ -1.64
PTCH1-220ENST00000550136 KRTAP10-6P60371 365 aaPredicted RBP4.77□□□□□ -1.65
PTCH1-220ENST00000550136 FAT4Q6V0I7 4981 aa4.77□□□□□ -1.65
PTCH1-220ENST00000550136 SPACA4Q8TDM5 124 aa4.77□□□□□ -1.65
PTCH1-220ENST00000550136 TNXBP22105 4242 aa4.75□□□□□ -1.65
PTCH1-220ENST00000550136 KRTAP12-2P59991 146 aa4.75□□□□□ -1.65
PTCH1-220ENST00000550136 KRTAP9-8Q9BYQ0 159 aa4.69□□□□□ -1.66
PTCH1-220ENST00000550136 KRTAP12-1P59990 96 aa4.68□□□□□ -1.66
PTCH1-220ENST00000550136 R4GN34 69 aa4.68□□□□□ -1.66
PTCH1-220ENST00000550136 MUC2Q02817 5179 aa4.61□□□□□ -1.67
PTCH1-220ENST00000550136 INE1O15225 51 aa4.6□□□□□ -1.67
PTCH1-220ENST00000550136 KRTAP10-8P60410 259 aa4.58□□□□□ -1.68
PTCH1-220ENST00000550136 CRCT1Q9UGL9 99 aa4.56□□□□□ -1.68
PTCH1-220ENST00000550136 LPAP08519 4548 aa4.54□□□□□ -1.68
PTCH1-220ENST00000550136 KRTAP13-2Q52LG2 175 aa4.53□□□□□ -1.68
PTCH1-220ENST00000550136 KRTAP23-1A1A580 65 aa4.48□□□□□ -1.69
PTCH1-220ENST00000550136 PP632Q6XCG6 107 aa4.48□□□□□ -1.69
PTCH1-220ENST00000550136 SPRR5A0A1B0GTR4 108 aa4.48□□□□□ -1.69
PTCH1-220ENST00000550136 FSIP2Q5CZC0 6907 aa4.46□□□□□ -1.7
PTCH1-220ENST00000550136 M0QZ58 72 aa4.45□□□□□ -1.7
PTCH1-220ENST00000550136 RPS29P62273 56 aaKnown RBP4.34□□□□□ -1.71
PTCH1-220ENST00000550136 MUC17Q685J3 4493 aa4.34□□□□□ -1.72
PTCH1-220ENST00000550136 C9orf92A6NGG3 77 aa4.33□□□□□ -1.72
PTCH1-220ENST00000550136 KRTAP1-4P0C5Y4 121 aa4.33□□□□□ -1.72
PTCH1-220ENST00000550136 HMCN1Q96RW7 5635 aa4.24□□□□□ -1.73
PTCH1-220ENST00000550136 KRTAP4-1Q9BYQ7 146 aa4.12□□□□□ -1.75
PTCH1-220ENST00000550136 MT1HP80294 61 aa4.1□□□□□ -1.75
PTCH1-220ENST00000550136 KRTAP19-2Q3LHN2 52 aa4.06□□□□□ -1.76
PTCH1-220ENST00000550136 SSPOA2VEC9 5147 aa4.05□□□□□ -1.76
PTCH1-220ENST00000550136 USH2AO75445 5202 aa4□□□□□ -1.77
PTCH1-220ENST00000550136 FCGBPQ9Y6R7 5405 aaPredicted RBP4□□□□□ -1.77
PTCH1-220ENST00000550136 TNP1P09430 55 aa3.98□□□□□ -1.77
PTCH1-220ENST00000550136 M0R2T5 61 aa3.97□□□□□ -1.77
PTCH1-220ENST00000550136 SYNE2Q8WXH0 6885 aaKnown RBP3.96□□□□□ -1.78
PTCH1-220ENST00000550136 MACF1Q9UPN3 7388 aaKnown RBP3.93□□□□□ -1.78
PTCH1-220ENST00000550136 FLGP20930 4061 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms