RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 SMIM26A0A096LP01 95 aa15.03■□□□□ -0
CCM2-219ENST00000544363 LCA10Q71F78 164 aa15.03■□□□□ -0
CCM2-219ENST00000544363 SPTSSBQ8NFR3 76 aa14.98□□□□□ -0.01
CCM2-219ENST00000544363 KRTAP3-3Q9BYR6 98 aa14.97□□□□□ -0.01
CCM2-219ENST00000544363 LCE2CQ5TA81 110 aa14.86□□□□□ -0.03
CCM2-219ENST00000544363 FLGP20930 4061 aaPredicted RBP14.84□□□□□ -0.03
CCM2-219ENST00000544363 Q1T7F1 81 aa14.79□□□□□ -0.04
CCM2-219ENST00000544363 CSAG1Q6PB30 78 aa14.77□□□□□ -0.05
CCM2-219ENST00000544363 V9GYY9 64 aa14.76□□□□□ -0.05
CCM2-219ENST00000544363 LINC01558Q9Y6Z2 57 aa14.74□□□□□ -0.05
CCM2-219ENST00000544363 FAT4Q6V0I7 4981 aa14.6□□□□□ -0.07
CCM2-219ENST00000544363 MT1HP80294 61 aa14.58□□□□□ -0.08
CCM2-219ENST00000544363 A0A1B0GU69 56 aa14.56□□□□□ -0.08
CCM2-219ENST00000544363 PRR15LQ9BU68 103 aa14.56□□□□□ -0.08
CCM2-219ENST00000544363 PSPHP1O15172 72 aa14.53□□□□□ -0.08
CCM2-219ENST00000544363 SEC61GP60059 68 aa14.53□□□□□ -0.08
CCM2-219ENST00000544363 M0R2T5 61 aa14.43□□□□□ -0.1
CCM2-219ENST00000544363 H0YAA0 97 aa14.42□□□□□ -0.1
CCM2-219ENST00000544363 Q5VV11 94 aa14.41□□□□□ -0.1
CCM2-219ENST00000544363 ADM2Q7Z4H4 148 aa14.39□□□□□ -0.11
CCM2-219ENST00000544363 KRTAP3-2Q9BYR7 98 aa14.39□□□□□ -0.11
CCM2-219ENST00000544363 KRTAP10-6P60371 365 aaPredicted RBP14.35□□□□□ -0.11
CCM2-219ENST00000544363 P0C880 135 aa14.28□□□□□ -0.12
CCM2-219ENST00000544363 A0A1B0GU33 70 aa14.18□□□□□ -0.14
CCM2-219ENST00000544363 LCE2AQ5TA79 106 aaPredicted RBP14.12□□□□□ -0.15
CCM2-219ENST00000544363 A6NED7 52 aa14.09□□□□□ -0.15
CCM2-219ENST00000544363 UQCR11O14957 56 aa14.09□□□□□ -0.15
CCM2-219ENST00000544363 KRTAP9-8Q9BYQ0 159 aa14.02□□□□□ -0.16
CCM2-219ENST00000544363 LORP23490 312 aaPredicted RBP13.98□□□□□ -0.17
CCM2-219ENST00000544363 MT2AP02795 61 aa13.96□□□□□ -0.17
CCM2-219ENST00000544363 SPATA8Q6RVD6 105 aa13.94□□□□□ -0.18
CCM2-219ENST00000544363 KRTAP13-4Q3LI77 160 aa13.93□□□□□ -0.18
CCM2-219ENST00000544363 MIR22HGQ0VDD5 57 aa13.92□□□□□ -0.18
CCM2-219ENST00000544363 M0QZ58 72 aa13.91□□□□□ -0.18
CCM2-219ENST00000544363 R4GN34 69 aa13.89□□□□□ -0.19
CCM2-219ENST00000544363 MT1FP04733 61 aa13.87□□□□□ -0.19
CCM2-219ENST00000544363 CRIPTQ9P021 101 aa13.86□□□□□ -0.19
CCM2-219ENST00000544363 KRTAP10-10P60014 251 aa13.85□□□□□ -0.19
CCM2-219ENST00000544363 CDC42SE1Q9NRR8 79 aa13.82□□□□□ -0.2
CCM2-219ENST00000544363 BRK1Q8WUW1 75 aa13.8□□□□□ -0.2
CCM2-219ENST00000544363 A8MU10 97 aa13.73□□□□□ -0.21
CCM2-219ENST00000544363 A0A0D9SG42 100 aa13.66□□□□□ -0.22
CCM2-219ENST00000544363 LINC01554Q52M75 96 aa13.61□□□□□ -0.23
CCM2-219ENST00000544363 SPRR2GQ9BYE4 73 aa13.61□□□□□ -0.23
CCM2-219ENST00000544363 KRTAP19-1Q8IUB9 90 aa13.58□□□□□ -0.24
CCM2-219ENST00000544363 KRTAP9-3Q9BYQ3 159 aa13.53□□□□□ -0.24
CCM2-219ENST00000544363 PRO0628Q9UI54 55 aa13.41□□□□□ -0.26
CCM2-219ENST00000544363 KRTAP12-1P59990 96 aa13.4□□□□□ -0.26
CCM2-219ENST00000544363 A6NN06 94 aa13.39□□□□□ -0.27
CCM2-219ENST00000544363 KRTAP12-2P59991 146 aa13.35□□□□□ -0.27
CCM2-219ENST00000544363 SPINT4Q6UDR6 99 aa13.35□□□□□ -0.27
CCM2-219ENST00000544363 K7ERS5 55 aa13.32□□□□□ -0.28
CCM2-219ENST00000544363 KRTAP19-8Q3LI54 63 aa13.28□□□□□ -0.28
CCM2-219ENST00000544363 LCE2BO14633 110 aa13.17□□□□□ -0.3
CCM2-219ENST00000544363 PLAC4Q8WY50 150 aa13.13□□□□□ -0.31
CCM2-219ENST00000544363 MT1BP07438 61 aa13.11□□□□□ -0.31
CCM2-219ENST00000544363 KRTAP9-2Q9BYQ4 174 aa13.06□□□□□ -0.32
CCM2-219ENST00000544363 PMAIP1Q13794 54 aa13.05□□□□□ -0.32
CCM2-219ENST00000544363 CAMK2N1Q7Z7J9 78 aa12.99□□□□□ -0.33
CCM2-219ENST00000544363 LCE2DQ5TA82 110 aaPredicted RBP12.9□□□□□ -0.34
CCM2-219ENST00000544363 USH2AO75445 5202 aa12.8□□□□□ -0.36
CCM2-219ENST00000544363 ROMO1P60602 79 aa12.75□□□□□ -0.37
CCM2-219ENST00000544363 C10orf95Q9H7T3 257 aa12.7□□□□□ -0.38
CCM2-219ENST00000544363 MT1XP80297 61 aa12.65□□□□□ -0.38
CCM2-219ENST00000544363 KRTAP10-5P60370 271 aa12.62□□□□□ -0.39
CCM2-219ENST00000544363 KRTAP9-6A0A140TA67 174 aa12.59□□□□□ -0.39
CCM2-219ENST00000544363 PRO2289Q9P1D8 64 aa12.54□□□□□ -0.4
CCM2-219ENST00000544363 KTN1-AS1Q86SY8 53 aa12.44□□□□□ -0.42
CCM2-219ENST00000544363 KRTAP19-6Q3LI70 58 aa12.41□□□□□ -0.42
CCM2-219ENST00000544363 SSPOA2VEC9 5147 aa12.4□□□□□ -0.43
CCM2-219ENST00000544363 CRCT1Q9UGL9 99 aa12.38□□□□□ -0.43
CCM2-219ENST00000544363 FSIP2Q5CZC0 6907 aa12.36□□□□□ -0.43
CCM2-219ENST00000544363 TNP1P09430 55 aa12.33□□□□□ -0.43
CCM2-219ENST00000544363 KRTAP25-1Q3LHN0 102 aa12.33□□□□□ -0.43
CCM2-219ENST00000544363 PRAC1Q96KF2 57 aa12.24□□□□□ -0.45
CCM2-219ENST00000544363 KRTAP10-7P60409 375 aaPredicted RBP12.12□□□□□ -0.47
CCM2-219ENST00000544363 KRTAP10-12P60413 245 aa12□□□□□ -0.49
CCM2-219ENST00000544363 FCGBPQ9Y6R7 5405 aaPredicted RBP11.93□□□□□ -0.5
CCM2-219ENST00000544363 KRTAP23-1A1A580 65 aa11.92□□□□□ -0.5
CCM2-219ENST00000544363 PP632Q6XCG6 107 aa11.87□□□□□ -0.51
CCM2-219ENST00000544363 LCE3AQ5TA76 89 aa11.84□□□□□ -0.51
CCM2-219ENST00000544363 SVIPQ8NHG7 77 aa11.79□□□□□ -0.52
CCM2-219ENST00000544363 KRTAP4-8A0A0G2JLE6 195 aa11.69□□□□□ -0.54
CCM2-219ENST00000544363 KRTAP4-8Q9BYQ9 185 aa11.69□□□□□ -0.54
CCM2-219ENST00000544363 KMT2DO14686 5537 aa11.62□□□□□ -0.55
CCM2-219ENST00000544363 KRTAP8-1Q8IUC2 63 aa11.6□□□□□ -0.55
CCM2-219ENST00000544363 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.51□□□□□ -0.57
CCM2-219ENST00000544363 KRTAP19-5Q3LI72 72 aa11.38□□□□□ -0.59
CCM2-219ENST00000544363 KRTAP12-3P60328 96 aa11.38□□□□□ -0.59
CCM2-219ENST00000544363 KRTAP9-7A8MTY7 169 aa11.33□□□□□ -0.6
CCM2-219ENST00000544363 MACF1Q9UPN3 7388 aaKnown RBP11.3□□□□□ -0.6
CCM2-219ENST00000544363 KRTAP19-7Q3SYF9 63 aa11.28□□□□□ -0.6
CCM2-219ENST00000544363 KRTAP15-1Q3LI76 137 aa11.11□□□□□ -0.63
CCM2-219ENST00000544363 MT1EP04732 61 aa11.09□□□□□ -0.63
CCM2-219ENST00000544363 SPRR2FQ96RM1 72 aa11□□□□□ -0.65
CCM2-219ENST00000544363 SYNE2Q8WXH0 6885 aaKnown RBP10.99□□□□□ -0.65
CCM2-219ENST00000544363 KRTAP5-9P26371 169 aa10.94□□□□□ -0.66
CCM2-219ENST00000544363 MT1LQ93083 61 aa10.85□□□□□ -0.67
CCM2-219ENST00000544363 KRTAP6-3Q3LI67 103 aa10.83□□□□□ -0.68
CCM2-219ENST00000544363 MUC12Q9UKN1 5478 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms