RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	CSAG1	Q6PB30	78 aa		5.19	□□□□□ -1.58
DDB1-222	ENST00000543627	MP68	P56378	58 aa		5.17	□□□□□ -1.58
DDB1-222	ENST00000543627	USH2A	O75445	5202 aa		5.16	□□□□□ -1.58
DDB1-222	ENST00000543627	OCR1	Q9BZK8	76 aa		5.14	□□□□□ -1.59
DDB1-222	ENST00000543627	KLKP1	Q107X0	134 aa		5.13	□□□□□ -1.59
DDB1-222	ENST00000543627	PRO0628	Q9UI54	55 aa		5.11	□□□□□ -1.59
DDB1-222	ENST00000543627	SSPO	A2VEC9	5147 aa		5.1	□□□□□ -1.59
DDB1-222	ENST00000543627	MT-ATP8	P03928	68 aa		5.1	□□□□□ -1.59
DDB1-222	ENST00000543627	KRTAP19-1	Q8IUB9	90 aa		5.1	□□□□□ -1.59
DDB1-222	ENST00000543627	KRTAP3-3	Q9BYR6	98 aa		5.09	□□□□□ -1.59
DDB1-222	ENST00000543627	NDUFC1	O43677	76 aa		5.08	□□□□□ -1.6
DDB1-222	ENST00000543627	ANAPC13	Q9BS18	74 aa		5.06	□□□□□ -1.6
DDB1-222	ENST00000543627		A8MUN3	132 aa		5.04	□□□□□ -1.6
DDB1-222	ENST00000543627		H3BPC8	53 aa		5.04	□□□□□ -1.6
DDB1-222	ENST00000543627	IMUP	Q9GZP8	106 aa		5.04	□□□□□ -1.6
DDB1-222	ENST00000543627		H3BS24	57 aa		5.02	□□□□□ -1.61
DDB1-222	ENST00000543627	RPS28	P62857	69 aa	Known RBP	5.01	□□□□□ -1.61
DDB1-222	ENST00000543627	TRAV7	A0A075B6U4	112 aa		4.98	□□□□□ -1.61
DDB1-222	ENST00000543627	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.98	□□□□□ -1.61
DDB1-222	ENST00000543627	KRTAP19-6	Q3LI70	58 aa		4.97	□□□□□ -1.61
DDB1-222	ENST00000543627	ADM2	Q7Z4H4	148 aa		4.97	□□□□□ -1.61
DDB1-222	ENST00000543627		Q5VV11	94 aa		4.96	□□□□□ -1.62
DDB1-222	ENST00000543627	SNURF	Q9Y675	71 aa		4.94	□□□□□ -1.62
DDB1-222	ENST00000543627	DMAC1	Q96GE9	116 aa		4.93	□□□□□ -1.62
DDB1-222	ENST00000543627	SPRR2G	Q9BYE4	73 aa		4.93	□□□□□ -1.62
DDB1-222	ENST00000543627	CCDC179	H3BU77	68 aa		4.92	□□□□□ -1.62
DDB1-222	ENST00000543627	CRIPT	Q9P021	101 aa		4.91	□□□□□ -1.62
DDB1-222	ENST00000543627	ACYP2	P14621	99 aa		4.9	□□□□□ -1.63
DDB1-222	ENST00000543627	SYNE2	Q8WXH0	6885 aa	Known RBP	4.9	□□□□□ -1.63
DDB1-222	ENST00000543627		H0YAA0	97 aa		4.89	□□□□□ -1.63
DDB1-222	ENST00000543627	MT1B	P07438	61 aa		4.89	□□□□□ -1.63
DDB1-222	ENST00000543627	MACF1	Q9UPN3	7388 aa	Known RBP	4.89	□□□□□ -1.63
DDB1-222	ENST00000543627	KRTAP19-8	Q3LI54	63 aa		4.88	□□□□□ -1.63
DDB1-222	ENST00000543627		A0A0A0MQY5	61 aa		4.87	□□□□□ -1.63
DDB1-222	ENST00000543627		A6NN06	94 aa		4.87	□□□□□ -1.63
DDB1-222	ENST00000543627	CHKB-CPT1B	H3BT56	60 aa		4.87	□□□□□ -1.63
DDB1-222	ENST00000543627	C20orf197	Q8N268	126 aa		4.87	□□□□□ -1.63
DDB1-222	ENST00000543627	PMAIP1	Q13794	54 aa		4.86	□□□□□ -1.63
DDB1-222	ENST00000543627	SERP2	Q8N6R1	65 aa		4.85	□□□□□ -1.63
DDB1-222	ENST00000543627		P0C880	135 aa		4.84	□□□□□ -1.63
DDB1-222	ENST00000543627		R4GN34	69 aa		4.83	□□□□□ -1.64
DDB1-222	ENST00000543627	SPTSSB	Q8NFR3	76 aa		4.82	□□□□□ -1.64
DDB1-222	ENST00000543627		M0QZ58	72 aa		4.81	□□□□□ -1.64
DDB1-222	ENST00000543627	KRTAP6-3	Q3LI67	103 aa		4.8	□□□□□ -1.64
DDB1-222	ENST00000543627	LINC01554	Q52M75	96 aa		4.79	□□□□□ -1.64
DDB1-222	ENST00000543627	PLAC4	Q8WY50	150 aa		4.77	□□□□□ -1.65
DDB1-222	ENST00000543627	KRTAP10-5	P60370	271 aa		4.76	□□□□□ -1.65
DDB1-222	ENST00000543627	KRTAP3-2	Q9BYR7	98 aa		4.76	□□□□□ -1.65
DDB1-222	ENST00000543627	TMEM258	P61165	79 aa		4.75	□□□□□ -1.65
DDB1-222	ENST00000543627	SPANXA2-OT1	Q8N9U9	137 aa		4.75	□□□□□ -1.65
DDB1-222	ENST00000543627	COX7C	P15954	63 aa		4.73	□□□□□ -1.65
DDB1-222	ENST00000543627	BRK1	Q8WUW1	75 aa		4.69	□□□□□ -1.66
DDB1-222	ENST00000543627	KRTAP20-1	Q3LI63	56 aa		4.68	□□□□□ -1.66
DDB1-222	ENST00000543627	COA5	Q86WW8	74 aa		4.68	□□□□□ -1.66
DDB1-222	ENST00000543627	PRO2289	Q9P1D8	64 aa		4.67	□□□□□ -1.66
DDB1-222	ENST00000543627	CYSTM1	Q9H1C7	97 aa		4.64	□□□□□ -1.67
DDB1-222	ENST00000543627	SMIM26	A0A096LP01	95 aa		4.63	□□□□□ -1.67
DDB1-222	ENST00000543627	NEB	P20929	6669 aa		4.63	□□□□□ -1.67
DDB1-222	ENST00000543627	MT1X	P80297	61 aa		4.62	□□□□□ -1.67
DDB1-222	ENST00000543627	SERP1	Q9Y6X1	66 aa		4.62	□□□□□ -1.67
DDB1-222	ENST00000543627		H7BZZ5	65 aa		4.61	□□□□□ -1.67
DDB1-222	ENST00000543627	KTN1-AS1	Q86SY8	53 aa		4.61	□□□□□ -1.67
DDB1-222	ENST00000543627	KRTAP13-4	Q3LI77	160 aa		4.54	□□□□□ -1.68
DDB1-222	ENST00000543627		A0A0D9SG42	100 aa		4.52	□□□□□ -1.69
DDB1-222	ENST00000543627	MUC12	Q9UKN1	5478 aa		4.51	□□□□□ -1.69
DDB1-222	ENST00000543627	SPATA8	Q6RVD6	105 aa		4.5	□□□□□ -1.69
DDB1-222	ENST00000543627	CAMK2N1	Q7Z7J9	78 aa		4.49	□□□□□ -1.69
DDB1-222	ENST00000543627	KMT2D	O14686	5537 aa		4.48	□□□□□ -1.69
DDB1-222	ENST00000543627		A0A1B0GU33	70 aa		4.48	□□□□□ -1.69
DDB1-222	ENST00000543627	KRTAP8-1	Q8IUC2	63 aa		4.48	□□□□□ -1.69
DDB1-222	ENST00000543627		A0A1B0GU69	56 aa		4.47	□□□□□ -1.69
DDB1-222	ENST00000543627	ATP5E	P56381	51 aa	Predicted RBP	4.46	□□□□□ -1.7
DDB1-222	ENST00000543627	SPRR2F	Q96RM1	72 aa		4.46	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP5-9	P26371	169 aa		4.45	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP10-7	P60409	375 aa	Predicted RBP	4.45	□□□□□ -1.7
DDB1-222	ENST00000543627	SPINT4	Q6UDR6	99 aa		4.45	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP4-8	A0A0G2JLE6	195 aa		4.44	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP12-2	P59991	146 aa		4.44	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP4-8	Q9BYQ9	185 aa		4.44	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP2-3	P0C7H8	128 aa		4.43	□□□□□ -1.7
DDB1-222	ENST00000543627	KRTAP2-4	Q9BYR9	128 aa		4.43	□□□□□ -1.7
DDB1-222	ENST00000543627	PSPHP1	O15172	72 aa		4.41	□□□□□ -1.7
DDB1-222	ENST00000543627	SPRR2E	P22531	72 aa		4.37	□□□□□ -1.71
DDB1-222	ENST00000543627	SPRR2B	P35325	72 aa		4.37	□□□□□ -1.71
DDB1-222	ENST00000543627	SPRR2A	P35326	72 aa		4.37	□□□□□ -1.71
DDB1-222	ENST00000543627	KRTAP10-12	P60413	245 aa		4.36	□□□□□ -1.71
DDB1-222	ENST00000543627	PRR15L	Q9BU68	103 aa		4.36	□□□□□ -1.71
DDB1-222	ENST00000543627		A8MU10	97 aa		4.34	□□□□□ -1.71
DDB1-222	ENST00000543627	MDN1	Q9NU22	5596 aa		4.34	□□□□□ -1.72
DDB1-222	ENST00000543627	KRTAP12-1	P59990	96 aa		4.32	□□□□□ -1.72
DDB1-222	ENST00000543627	LINC01558	Q9Y6Z2	57 aa		4.29	□□□□□ -1.72
DDB1-222	ENST00000543627		Q1T7F1	81 aa		4.28	□□□□□ -1.72
DDB1-222	ENST00000543627	LCE1A	Q5T7P2	110 aa		4.27	□□□□□ -1.73
DDB1-222	ENST00000543627	KRTAP2-2	Q9BYT5	123 aa		4.26	□□□□□ -1.73
DDB1-222	ENST00000543627	KRTAP2-1	Q9BYU5	128 aa		4.26	□□□□□ -1.73
DDB1-222	ENST00000543627	SPRR2D	P22532	72 aa		4.23	□□□□□ -1.73
DDB1-222	ENST00000543627	UQCR11	O14957	56 aa		4.2	□□□□□ -1.74
DDB1-222	ENST00000543627	C10orf95	Q9H7T3	257 aa		4.14	□□□□□ -1.75
DDB1-222	ENST00000543627	TNP1	P09430	55 aa		4.13	□□□□□ -1.75
DDB1-222	ENST00000543627	MIR22HG	Q0VDD5	57 aa		4.13	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms