RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 IGKV2-30P06310 120 aa4.32□□□□□ -1.72
CLSTN3-212ENST00000541770 MP68P56378 58 aa4.32□□□□□ -1.72
CLSTN3-212ENST00000541770 MACF1Q9UPN3 7388 aaKnown RBP4.32□□□□□ -1.72
CLSTN3-212ENST00000541770 H0Y9P7 68 aa4.31□□□□□ -1.72
CLSTN3-212ENST00000541770 KRTAP9-3Q9BYQ3 159 aa4.31□□□□□ -1.72
CLSTN3-212ENST00000541770 TRAV22A0A0B4J277 110 aa4.3□□□□□ -1.72
CLSTN3-212ENST00000541770 C20orf197Q8N268 126 aa4.3□□□□□ -1.72
CLSTN3-212ENST00000541770 H3BPC8 53 aa4.28□□□□□ -1.72
CLSTN3-212ENST00000541770 SNURFQ9Y675 71 aa4.28□□□□□ -1.72
CLSTN3-212ENST00000541770 KLKP1Q107X0 134 aa4.27□□□□□ -1.73
CLSTN3-212ENST00000541770 LINC00208Q96KT6 92 aa4.27□□□□□ -1.73
CLSTN3-212ENST00000541770 LOC101927531A0A1B0GV80 90 aa4.26□□□□□ -1.73
CLSTN3-212ENST00000541770 NDUFC1O43677 76 aa4.26□□□□□ -1.73
CLSTN3-212ENST00000541770 C1orf64Q8NEQ6 169 aa4.26□□□□□ -1.73
CLSTN3-212ENST00000541770 KRTAP19-6Q3LI70 58 aa4.25□□□□□ -1.73
CLSTN3-212ENST00000541770 CYP4F30PQ9H0H9 118 aa4.25□□□□□ -1.73
CLSTN3-212ENST00000541770 C4orf26Q17RF5 130 aa4.24□□□□□ -1.73
CLSTN3-212ENST00000541770 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
CLSTN3-212ENST00000541770 H1FX-AS1Q4G0G2 97 aa4.23□□□□□ -1.73
CLSTN3-212ENST00000541770 CYSTM1Q9H1C7 97 aa4.23□□□□□ -1.73
CLSTN3-212ENST00000541770 TMEM258P61165 79 aa4.2□□□□□ -1.74
CLSTN3-212ENST00000541770 H7BZZ5 65 aa4.19□□□□□ -1.74
CLSTN3-212ENST00000541770 KRTAP3-1Q9BYR8 98 aa4.19□□□□□ -1.74
CLSTN3-212ENST00000541770 ATP5EP56381 51 aaPredicted RBP4.16□□□□□ -1.74
CLSTN3-212ENST00000541770 SPANXA2-OT1Q8N9U9 137 aa4.14□□□□□ -1.75
CLSTN3-212ENST00000541770 KRTAP20-1Q3LI63 56 aa4.13□□□□□ -1.75
CLSTN3-212ENST00000541770 S4R3F8 94 aa4.13□□□□□ -1.75
CLSTN3-212ENST00000541770 A8MUN3 132 aa4.12□□□□□ -1.75
CLSTN3-212ENST00000541770 NEBP20929 6669 aa4.12□□□□□ -1.75
CLSTN3-212ENST00000541770 LCA10Q71F78 164 aa4.1□□□□□ -1.75
CLSTN3-212ENST00000541770 CSAG1Q6PB30 78 aa4.08□□□□□ -1.76
CLSTN3-212ENST00000541770 SERP1Q9Y6X1 66 aa4.08□□□□□ -1.76
CLSTN3-212ENST00000541770 RPS28P62857 69 aaKnown RBP4.06□□□□□ -1.76
CLSTN3-212ENST00000541770 DMAC1Q96GE9 116 aa4.06□□□□□ -1.76
CLSTN3-212ENST00000541770 ACYP2P14621 99 aa4.05□□□□□ -1.76
CLSTN3-212ENST00000541770 A6NN06 94 aa4.01□□□□□ -1.77
CLSTN3-212ENST00000541770 CHKB-CPT1BH3BT56 60 aa4.01□□□□□ -1.77
CLSTN3-212ENST00000541770 COA5Q86WW8 74 aa4.01□□□□□ -1.77
CLSTN3-212ENST00000541770 MUC12Q9UKN1 5478 aa3.99□□□□□ -1.77
CLSTN3-212ENST00000541770 SMIM26A0A096LP01 95 aa3.97□□□□□ -1.77
CLSTN3-212ENST00000541770 H0YAA0 97 aa3.97□□□□□ -1.77
CLSTN3-212ENST00000541770 SPTSSBQ8NFR3 76 aa3.95□□□□□ -1.78
CLSTN3-212ENST00000541770 SVIPQ8NHG7 77 aa3.95□□□□□ -1.78
CLSTN3-212ENST00000541770 LOC100996750A0A140TA64 210 aa3.94□□□□□ -1.78
CLSTN3-212ENST00000541770 KRTAP4-6Q9BYQ5 205 aa3.94□□□□□ -1.78
CLSTN3-212ENST00000541770 KRTAP19-4Q3LI73 84 aa3.92□□□□□ -1.78
CLSTN3-212ENST00000541770 KRTAP2-3P0C7H8 128 aa3.91□□□□□ -1.78
CLSTN3-212ENST00000541770 Q5VV11 94 aa3.91□□□□□ -1.78
CLSTN3-212ENST00000541770 KRTAP2-4Q9BYR9 128 aa3.91□□□□□ -1.78
CLSTN3-212ENST00000541770 V9GYY9 64 aa3.91□□□□□ -1.78
CLSTN3-212ENST00000541770 KRTAP5-9P26371 169 aa3.9□□□□□ -1.79
CLSTN3-212ENST00000541770 CRIPTQ9P021 101 aa3.9□□□□□ -1.79
CLSTN3-212ENST00000541770 MT1BP07438 61 aa3.89□□□□□ -1.79
CLSTN3-212ENST00000541770 ADM2Q7Z4H4 148 aa3.89□□□□□ -1.79
CLSTN3-212ENST00000541770 SPRR2GQ9BYE4 73 aa3.89□□□□□ -1.79
CLSTN3-212ENST00000541770 Q1T7F1 81 aa3.88□□□□□ -1.79
CLSTN3-212ENST00000541770 KRTAP10-5P60370 271 aa3.87□□□□□ -1.79
CLSTN3-212ENST00000541770 KMT2DO14686 5537 aa3.86□□□□□ -1.79
CLSTN3-212ENST00000541770 LINC01558Q9Y6Z2 57 aa3.85□□□□□ -1.79
CLSTN3-212ENST00000541770 KRTAP19-8Q3LI54 63 aa3.84□□□□□ -1.79
CLSTN3-212ENST00000541770 PRR15LQ9BU68 103 aa3.84□□□□□ -1.79
CLSTN3-212ENST00000541770 KRTAP23-1A1A580 65 aa3.83□□□□□ -1.8
CLSTN3-212ENST00000541770 P0C880 135 aa3.83□□□□□ -1.8
CLSTN3-212ENST00000541770 SEC61GP60059 68 aa3.83□□□□□ -1.8
CLSTN3-212ENST00000541770 A0A1B0GU69 56 aa3.82□□□□□ -1.8
CLSTN3-212ENST00000541770 MDN1Q9NU22 5596 aa3.81□□□□□ -1.8
CLSTN3-212ENST00000541770 PSPHP1O15172 72 aa3.81□□□□□ -1.8
CLSTN3-212ENST00000541770 SPRR2EP22531 72 aa3.81□□□□□ -1.8
CLSTN3-212ENST00000541770 SPRR2BP35325 72 aa3.81□□□□□ -1.8
CLSTN3-212ENST00000541770 SPRR2AP35326 72 aa3.81□□□□□ -1.8
CLSTN3-212ENST00000541770 SPRR2FQ96RM1 72 aa3.8□□□□□ -1.8
CLSTN3-212ENST00000541770 R4GN34 69 aa3.79□□□□□ -1.8
CLSTN3-212ENST00000541770 M0QZ58 72 aa3.76□□□□□ -1.81
CLSTN3-212ENST00000541770 KRTAP2-2Q9BYT5 123 aa3.76□□□□□ -1.81
CLSTN3-212ENST00000541770 KRTAP2-1Q9BYU5 128 aa3.76□□□□□ -1.81
CLSTN3-212ENST00000541770 KRTAP4-8Q9BYQ9 185 aa3.74□□□□□ -1.81
CLSTN3-212ENST00000541770 A6NED7 52 aa3.71□□□□□ -1.82
CLSTN3-212ENST00000541770 KRTAP4-12Q9BQ66 201 aa3.71□□□□□ -1.82
CLSTN3-212ENST00000541770 A0A1B0GU33 70 aa3.7□□□□□ -1.82
CLSTN3-212ENST00000541770 UQCR11O14957 56 aa3.7□□□□□ -1.82
CLSTN3-212ENST00000541770 SPRR2DP22532 72 aa3.69□□□□□ -1.82
CLSTN3-212ENST00000541770 KRTAP8-1Q8IUC2 63 aa3.68□□□□□ -1.82
CLSTN3-212ENST00000541770 PLAC4Q8WY50 150 aa3.68□□□□□ -1.82
CLSTN3-212ENST00000541770 LINC01554Q52M75 96 aa3.67□□□□□ -1.82
CLSTN3-212ENST00000541770 LCE1AQ5T7P2 110 aa3.67□□□□□ -1.82
CLSTN3-212ENST00000541770 BRK1Q8WUW1 75 aa3.66□□□□□ -1.82
CLSTN3-212ENST00000541770 MIR22HGQ0VDD5 57 aa3.65□□□□□ -1.83
CLSTN3-212ENST00000541770 KRTAP13-4Q3LI77 160 aa3.65□□□□□ -1.83
CLSTN3-212ENST00000541770 SPATA8Q6RVD6 105 aa3.65□□□□□ -1.83
CLSTN3-212ENST00000541770 GPR98Q8WXG9 6306 aa3.65□□□□□ -1.83
CLSTN3-212ENST00000541770 CDC42SE1Q9NRR8 79 aa3.63□□□□□ -1.83
CLSTN3-212ENST00000541770 PRO2289Q9P1D8 64 aa3.63□□□□□ -1.83
CLSTN3-212ENST00000541770 A0A0D9SG42 100 aa3.62□□□□□ -1.83
CLSTN3-212ENST00000541770 A8MU10 97 aa3.6□□□□□ -1.83
CLSTN3-212ENST00000541770 MT1XP80297 61 aa3.6□□□□□ -1.83
CLSTN3-212ENST00000541770 LCE3BQ5TA77 95 aa3.6□□□□□ -1.83
CLSTN3-212ENST00000541770 LCE4AQ5TA78 99 aa3.57□□□□□ -1.84
CLSTN3-212ENST00000541770 PRO0628Q9UI54 55 aa3.57□□□□□ -1.84
CLSTN3-212ENST00000541770 KRTAP4-8A0A0G2JLE6 195 aa3.56□□□□□ -1.84
CLSTN3-212ENST00000541770 K7ERS5 55 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms