RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 NOTCH2NLQ7Z3S9 236 aa5.95□□□□□ -1.46
CHFR-219ENST00000541341 IGKV2D-30A0A075B6S6 120 aa5.94□□□□□ -1.46
CHFR-219ENST00000541341 C4orf48Q5BLP8 95 aa5.94□□□□□ -1.46
CHFR-219ENST00000541341 LPAP08519 4548 aa5.93□□□□□ -1.46
CHFR-219ENST00000541341 RPS29P62273 56 aaKnown RBP5.91□□□□□ -1.46
CHFR-219ENST00000541341 SPINK1P00995 79 aa5.89□□□□□ -1.47
CHFR-219ENST00000541341 K7ERS5 55 aa5.88□□□□□ -1.47
CHFR-219ENST00000541341 KRTAP16-1A8MUX0 517 aa5.85□□□□□ -1.47
CHFR-219ENST00000541341 ANAPC11Q9NYG5 84 aa5.85□□□□□ -1.47
CHFR-219ENST00000541341 KRTAP10-8P60410 259 aa5.84□□□□□ -1.47
CHFR-219ENST00000541341 KRTAP1-4P0C5Y4 121 aa5.8□□□□□ -1.48
CHFR-219ENST00000541341 PRAC1Q96KF2 57 aa5.8□□□□□ -1.48
CHFR-219ENST00000541341 TYMSOSQ8TAI1 123 aa5.76□□□□□ -1.49
CHFR-219ENST00000541341 KRTAP13-2Q52LG2 175 aa5.75□□□□□ -1.49
CHFR-219ENST00000541341 CSAG1Q6PB30 78 aa5.75□□□□□ -1.49
CHFR-219ENST00000541341 A0A1B0GU33 70 aa5.74□□□□□ -1.49
CHFR-219ENST00000541341 MUC2Q02817 5179 aa5.73□□□□□ -1.49
CHFR-219ENST00000541341 A8MUU9 505 aa5.71□□□□□ -1.5
CHFR-219ENST00000541341 KRTAP25-1Q3LHN0 102 aa5.7□□□□□ -1.5
CHFR-219ENST00000541341 ADM2Q7Z4H4 148 aa5.7□□□□□ -1.5
CHFR-219ENST00000541341 H1FX-AS1Q4G0G2 97 aa5.69□□□□□ -1.5
CHFR-219ENST00000541341 LINC00304Q8N9R0 145 aa5.68□□□□□ -1.5
CHFR-219ENST00000541341 C20orf166-AS1Q96NR2 134 aa5.66□□□□□ -1.5
CHFR-219ENST00000541341 COX6B2Q6YFQ2 88 aa5.65□□□□□ -1.5
CHFR-219ENST00000541341 KRTAP9-2Q9BYQ4 174 aa5.63□□□□□ -1.51
CHFR-219ENST00000541341 FAT4Q6V0I7 4981 aa5.62□□□□□ -1.51
CHFR-219ENST00000541341 H0YAA0 97 aa5.61□□□□□ -1.51
CHFR-219ENST00000541341 H3BS24 57 aa5.6□□□□□ -1.51
CHFR-219ENST00000541341 ROMO1P60602 79 aa5.58□□□□□ -1.52
CHFR-219ENST00000541341 MUC17Q685J3 4493 aa5.55□□□□□ -1.52
CHFR-219ENST00000541341 RPL37P61927 97 aaKnown RBP5.53□□□□□ -1.52
CHFR-219ENST00000541341 LCE2AQ5TA79 106 aaPredicted RBP5.51□□□□□ -1.53
CHFR-219ENST00000541341 KRTAP9-6A0A140TA67 174 aa5.5□□□□□ -1.53
CHFR-219ENST00000541341 KRTAP3-1Q9BYR8 98 aa5.44□□□□□ -1.54
CHFR-219ENST00000541341 CRIPTQ9P021 101 aa5.42□□□□□ -1.54
CHFR-219ENST00000541341 C9orf92A6NGG3 77 aa5.41□□□□□ -1.54
CHFR-219ENST00000541341 TPRXLQ17RH7 258 aa5.39□□□□□ -1.55
CHFR-219ENST00000541341 FSIP2Q5CZC0 6907 aa5.37□□□□□ -1.55
CHFR-219ENST00000541341 SPINT4Q6UDR6 99 aa5.36□□□□□ -1.55
CHFR-219ENST00000541341 KRTAP4-1Q9BYQ7 146 aa5.36□□□□□ -1.55
CHFR-219ENST00000541341 S4R3F8 94 aa5.36□□□□□ -1.55
CHFR-219ENST00000541341 M0QZ58 72 aa5.32□□□□□ -1.56
CHFR-219ENST00000541341 LCE2BO14633 110 aa5.31□□□□□ -1.56
CHFR-219ENST00000541341 KRTAP10-6P60371 365 aaPredicted RBP5.29□□□□□ -1.56
CHFR-219ENST00000541341 XP32Q5T750 250 aa5.27□□□□□ -1.57
CHFR-219ENST00000541341 CRCT1Q9UGL9 99 aa5.27□□□□□ -1.57
CHFR-219ENST00000541341 SEC61BP60468 96 aaKnown RBP5.25□□□□□ -1.57
CHFR-219ENST00000541341 A0A0D9SG42 100 aa5.21□□□□□ -1.58
CHFR-219ENST00000541341 P0C880 135 aa5.21□□□□□ -1.58
CHFR-219ENST00000541341 LCE2CQ5TA81 110 aa5.21□□□□□ -1.58
CHFR-219ENST00000541341 MT1HP80294 61 aa5.17□□□□□ -1.58
CHFR-219ENST00000541341 KRTAP15-1Q3LI76 137 aa5.17□□□□□ -1.58
CHFR-219ENST00000541341 KRTAP19-2Q3LHN2 52 aa5.16□□□□□ -1.58
CHFR-219ENST00000541341 KRTAP13-4Q3LI77 160 aa5.14□□□□□ -1.59
CHFR-219ENST00000541341 KRTAP12-1P59990 96 aa5.11□□□□□ -1.59
CHFR-219ENST00000541341 M0R2T5 61 aa5.1□□□□□ -1.59
CHFR-219ENST00000541341 FLGP20930 4061 aaPredicted RBP5.08□□□□□ -1.6
CHFR-219ENST00000541341 LORP23490 312 aaPredicted RBP5.08□□□□□ -1.6
CHFR-219ENST00000541341 KRTAP12-2P59991 146 aa5.08□□□□□ -1.6
CHFR-219ENST00000541341 NDUFAF8A1L188 74 aa5.07□□□□□ -1.6
CHFR-219ENST00000541341 PP632Q6XCG6 107 aa5.07□□□□□ -1.6
CHFR-219ENST00000541341 C10orf95Q9H7T3 257 aa5.01□□□□□ -1.61
CHFR-219ENST00000541341 R4GN34 69 aa5□□□□□ -1.61
CHFR-219ENST00000541341 USH2AO75445 5202 aa4.98□□□□□ -1.61
CHFR-219ENST00000541341 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
CHFR-219ENST00000541341 SSPOA2VEC9 5147 aa4.97□□□□□ -1.61
CHFR-219ENST00000541341 PLAC4Q8WY50 150 aa4.95□□□□□ -1.62
CHFR-219ENST00000541341 KRTAP9-7A8MTY7 169 aa4.93□□□□□ -1.62
CHFR-219ENST00000541341 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.92□□□□□ -1.62
CHFR-219ENST00000541341 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.63
CHFR-219ENST00000541341 A0A0A0MQY5 61 aa4.89□□□□□ -1.63
CHFR-219ENST00000541341 KRTAP9-8Q9BYQ0 159 aa4.84□□□□□ -1.63
CHFR-219ENST00000541341 FCGBPQ9Y6R7 5405 aaPredicted RBP4.83□□□□□ -1.64
CHFR-219ENST00000541341 CAMK2N1Q7Z7J9 78 aa4.79□□□□□ -1.64
CHFR-219ENST00000541341 MT2AP02795 61 aa4.77□□□□□ -1.65
CHFR-219ENST00000541341 KRTAP19-1Q8IUB9 90 aa4.77□□□□□ -1.65
CHFR-219ENST00000541341 MT1FP04733 61 aa4.75□□□□□ -1.65
CHFR-219ENST00000541341 SYNE2Q8WXH0 6885 aaKnown RBP4.72□□□□□ -1.65
CHFR-219ENST00000541341 TNP1P09430 55 aa4.72□□□□□ -1.65
CHFR-219ENST00000541341 KRTAP10-10P60014 251 aa4.72□□□□□ -1.65
CHFR-219ENST00000541341 MACF1Q9UPN3 7388 aaKnown RBP4.72□□□□□ -1.65
CHFR-219ENST00000541341 KRTAP9-3Q9BYQ3 159 aa4.68□□□□□ -1.66
CHFR-219ENST00000541341 SPRR5A0A1B0GTR4 108 aa4.57□□□□□ -1.68
CHFR-219ENST00000541341 KRTAP19-6Q3LI70 58 aa4.56□□□□□ -1.68
CHFR-219ENST00000541341 KRTAP6-3Q3LI67 103 aa4.48□□□□□ -1.69
CHFR-219ENST00000541341 INE1O15225 51 aa4.45□□□□□ -1.7
CHFR-219ENST00000541341 MUC12Q9UKN1 5478 aa4.44□□□□□ -1.7
CHFR-219ENST00000541341 PRO2289Q9P1D8 64 aa4.39□□□□□ -1.71
CHFR-219ENST00000541341 NEBP20929 6669 aa4.38□□□□□ -1.71
CHFR-219ENST00000541341 SPRR2GQ9BYE4 73 aa4.38□□□□□ -1.71
CHFR-219ENST00000541341 KRTAP19-8Q3LI54 63 aa4.3□□□□□ -1.72
CHFR-219ENST00000541341 KRTAP20-1Q3LI63 56 aa4.3□□□□□ -1.72
CHFR-219ENST00000541341 MT1BP07438 61 aa4.28□□□□□ -1.72
CHFR-219ENST00000541341 LOC100996750A0A140TA64 210 aa4.26□□□□□ -1.73
CHFR-219ENST00000541341 KRTAP4-6Q9BYQ5 205 aa4.26□□□□□ -1.73
CHFR-219ENST00000541341 KRTAP8-1Q8IUC2 63 aa4.25□□□□□ -1.73
CHFR-219ENST00000541341 MDN1Q9NU22 5596 aa4.24□□□□□ -1.73
CHFR-219ENST00000541341 KMT2DO14686 5537 aa4.2□□□□□ -1.74
CHFR-219ENST00000541341 KRTAP10-5P60370 271 aa4.2□□□□□ -1.74
CHFR-219ENST00000541341 KRTAP5-9P26371 169 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms