RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 KRTAP13-3Q3SY46 172 aa8.08□□□□□ -1.12
SFSWAP-210ENST00000541286 DMAC1Q96GE9 116 aa8.07□□□□□ -1.12
SFSWAP-210ENST00000541286 TYMSOSQ8TAI1 123 aa8.03□□□□□ -1.12
SFSWAP-210ENST00000541286 LPAP08519 4548 aa7.95□□□□□ -1.14
SFSWAP-210ENST00000541286 C9orf92A6NGG3 77 aa7.93□□□□□ -1.14
SFSWAP-210ENST00000541286 KRTAP16-1A8MUX0 517 aa7.93□□□□□ -1.14
SFSWAP-210ENST00000541286 MT1HL1P0DM35 61 aa7.9□□□□□ -1.14
SFSWAP-210ENST00000541286 LINC00304Q8N9R0 145 aa7.86□□□□□ -1.15
SFSWAP-210ENST00000541286 LRP2P98164 4655 aa7.85□□□□□ -1.15
SFSWAP-210ENST00000541286 KRTAP10-8P60410 259 aa7.83□□□□□ -1.16
SFSWAP-210ENST00000541286 H0YAA0 97 aa7.83□□□□□ -1.16
SFSWAP-210ENST00000541286 ROMO1P60602 79 aa7.79□□□□□ -1.16
SFSWAP-210ENST00000541286 J3QL48 77 aa7.78□□□□□ -1.16
SFSWAP-210ENST00000541286 KRTAP25-1Q3LHN0 102 aa7.78□□□□□ -1.16
SFSWAP-210ENST00000541286 A8MUU9 505 aa7.75□□□□□ -1.17
SFSWAP-210ENST00000541286 MUC2Q02817 5179 aa7.74□□□□□ -1.17
SFSWAP-210ENST00000541286 A0A1B0GU33 70 aa7.71□□□□□ -1.18
SFSWAP-210ENST00000541286 UBR4Q5T4S7 5183 aa7.69□□□□□ -1.18
SFSWAP-210ENST00000541286 P0C880 135 aa7.67□□□□□ -1.18
SFSWAP-210ENST00000541286 A0A0A0MQY5 61 aa7.67□□□□□ -1.18
SFSWAP-210ENST00000541286 HMCN2Q8NDA2 5059 aa7.66□□□□□ -1.18
SFSWAP-210ENST00000541286 RNF213Q63HN8 5207 aa7.66□□□□□ -1.18
SFSWAP-210ENST00000541286 A0A0D9SG42 100 aa7.62□□□□□ -1.19
SFSWAP-210ENST00000541286 SPINT4Q6UDR6 99 aa7.59□□□□□ -1.19
SFSWAP-210ENST00000541286 H1FX-AS1Q4G0G2 97 aa7.59□□□□□ -1.19
SFSWAP-210ENST00000541286 KRTAP3-1Q9BYR8 98 aa7.57□□□□□ -1.2
SFSWAP-210ENST00000541286 C10orf95Q9H7T3 257 aa7.56□□□□□ -1.2
SFSWAP-210ENST00000541286 C20orf166-AS1Q96NR2 134 aa7.54□□□□□ -1.2
SFSWAP-210ENST00000541286 K7ERS5 55 aa7.52□□□□□ -1.21
SFSWAP-210ENST00000541286 RPS29P62273 56 aaKnown RBP7.52□□□□□ -1.21
SFSWAP-210ENST00000541286 COX6B2Q6YFQ2 88 aa7.51□□□□□ -1.21
SFSWAP-210ENST00000541286 NDUFAF8A1L188 74 aa7.47□□□□□ -1.21
SFSWAP-210ENST00000541286 TPRXLQ17RH7 258 aa7.44□□□□□ -1.22
SFSWAP-210ENST00000541286 XP32Q5T750 250 aa7.4□□□□□ -1.22
SFSWAP-210ENST00000541286 FAT4Q6V0I7 4981 aa7.39□□□□□ -1.23
SFSWAP-210ENST00000541286 KRTAP13-4Q3LI77 160 aa7.38□□□□□ -1.23
SFSWAP-210ENST00000541286 RPL37P61927 97 aaKnown RBP7.33□□□□□ -1.24
SFSWAP-210ENST00000541286 KRTAP4-1Q9BYQ7 146 aa7.27□□□□□ -1.25
SFSWAP-210ENST00000541286 KRTAP10-6P60371 365 aaPredicted RBP7.23□□□□□ -1.25
SFSWAP-210ENST00000541286 S4R3F8 94 aa7.23□□□□□ -1.25
SFSWAP-210ENST00000541286 MUC17Q685J3 4493 aa7.21□□□□□ -1.25
SFSWAP-210ENST00000541286 KRTAP3-3Q9BYR6 98 aa7.2□□□□□ -1.26
SFSWAP-210ENST00000541286 KRTAP12-2P59991 146 aa7.18□□□□□ -1.26
SFSWAP-210ENST00000541286 KRTAP15-1Q3LI76 137 aa7.17□□□□□ -1.26
SFSWAP-210ENST00000541286 KRTAP3-2Q9BYR7 98 aa7.12□□□□□ -1.27
SFSWAP-210ENST00000541286 LUZP6Q538Z0 58 aa7.03□□□□□ -1.28
SFSWAP-210ENST00000541286 SEC61BP60468 96 aaKnown RBP7.03□□□□□ -1.28
SFSWAP-210ENST00000541286 KRTAP12-1P59990 96 aa6.97□□□□□ -1.29
SFSWAP-210ENST00000541286 KRTAP19-2Q3LHN2 52 aa6.88□□□□□ -1.31
SFSWAP-210ENST00000541286 M0QZ58 72 aa6.87□□□□□ -1.31
SFSWAP-210ENST00000541286 FLGP20930 4061 aaPredicted RBP6.86□□□□□ -1.31
SFSWAP-210ENST00000541286 R4GN34 69 aa6.83□□□□□ -1.32
SFSWAP-210ENST00000541286 LCE2CQ5TA81 110 aa6.82□□□□□ -1.32
SFSWAP-210ENST00000541286 PLAC4Q8WY50 150 aa6.76□□□□□ -1.33
SFSWAP-210ENST00000541286 LORP23490 312 aaPredicted RBP6.69□□□□□ -1.34
SFSWAP-210ENST00000541286 MT1HP80294 61 aa6.69□□□□□ -1.34
SFSWAP-210ENST00000541286 M0R2T5 61 aa6.69□□□□□ -1.34
SFSWAP-210ENST00000541286 FSIP2Q5CZC0 6907 aa6.66□□□□□ -1.34
SFSWAP-210ENST00000541286 CAMK2N1Q7Z7J9 78 aa6.56□□□□□ -1.36
SFSWAP-210ENST00000541286 USH2AO75445 5202 aa6.55□□□□□ -1.36
SFSWAP-210ENST00000541286 LCE2AQ5TA79 106 aaPredicted RBP6.5□□□□□ -1.37
SFSWAP-210ENST00000541286 KRTAP9-8Q9BYQ0 159 aa6.4□□□□□ -1.38
SFSWAP-210ENST00000541286 MT1FP04733 61 aa6.4□□□□□ -1.39
SFSWAP-210ENST00000541286 MT2AP02795 61 aa6.38□□□□□ -1.39
SFSWAP-210ENST00000541286 KRTAP10-10P60014 251 aa6.35□□□□□ -1.39
SFSWAP-210ENST00000541286 TNP1P09430 55 aa6.17□□□□□ -1.42
SFSWAP-210ENST00000541286 PP632Q6XCG6 107 aa6.16□□□□□ -1.42
SFSWAP-210ENST00000541286 KRTAP19-1Q8IUB9 90 aa6.16□□□□□ -1.42
SFSWAP-210ENST00000541286 KRTAP9-3Q9BYQ3 159 aa6.15□□□□□ -1.42
SFSWAP-210ENST00000541286 SSPOA2VEC9 5147 aa6.14□□□□□ -1.43
SFSWAP-210ENST00000541286 LCE2BO14633 110 aa6.14□□□□□ -1.43
SFSWAP-210ENST00000541286 SPRR2GQ9BYE4 73 aa5.98□□□□□ -1.45
SFSWAP-210ENST00000541286 KMT2DO14686 5537 aa5.97□□□□□ -1.45
SFSWAP-210ENST00000541286 KRTAP9-2Q9BYQ4 174 aa5.96□□□□□ -1.46
SFSWAP-210ENST00000541286 MT1BP07438 61 aa5.95□□□□□ -1.46
SFSWAP-210ENST00000541286 PRO2289Q9P1D8 64 aa5.95□□□□□ -1.46
SFSWAP-210ENST00000541286 SPRR5A0A1B0GTR4 108 aa5.89□□□□□ -1.47
SFSWAP-210ENST00000541286 LCE3AQ5TA76 89 aa5.86□□□□□ -1.47
SFSWAP-210ENST00000541286 FCGBPQ9Y6R7 5405 aaPredicted RBP5.85□□□□□ -1.47
SFSWAP-210ENST00000541286 KRTAP19-8Q3LI54 63 aa5.82□□□□□ -1.48
SFSWAP-210ENST00000541286 LCE2DQ5TA82 110 aaPredicted RBP5.78□□□□□ -1.48
SFSWAP-210ENST00000541286 KRTAP23-1A1A580 65 aa5.74□□□□□ -1.49
SFSWAP-210ENST00000541286 MACF1Q9UPN3 7388 aaKnown RBP5.73□□□□□ -1.49
SFSWAP-210ENST00000541286 MT1XP80297 61 aa5.72□□□□□ -1.49
SFSWAP-210ENST00000541286 SYNE2Q8WXH0 6885 aaKnown RBP5.71□□□□□ -1.5
SFSWAP-210ENST00000541286 KRTAP10-5P60370 271 aa5.7□□□□□ -1.5
SFSWAP-210ENST00000541286 CRCT1Q9UGL9 99 aa5.65□□□□□ -1.5
SFSWAP-210ENST00000541286 INE1O15225 51 aa5.61□□□□□ -1.51
SFSWAP-210ENST00000541286 KRTAP10-7P60409 375 aaPredicted RBP5.59□□□□□ -1.51
SFSWAP-210ENST00000541286 KRTAP10-12P60413 245 aa5.57□□□□□ -1.52
SFSWAP-210ENST00000541286 KRTAP19-6Q3LI70 58 aa5.57□□□□□ -1.52
SFSWAP-210ENST00000541286 KRTAP4-8A0A0G2JLE6 195 aa5.55□□□□□ -1.52
SFSWAP-210ENST00000541286 KRTAP4-8Q9BYQ9 185 aa5.55□□□□□ -1.52
SFSWAP-210ENST00000541286 KRTAP12-3P60328 96 aa5.55□□□□□ -1.52
SFSWAP-210ENST00000541286 KRTAP8-1Q8IUC2 63 aa5.52□□□□□ -1.53
SFSWAP-210ENST00000541286 MUC12Q9UKN1 5478 aa5.51□□□□□ -1.53
SFSWAP-210ENST00000541286 KRTAP9-6A0A140TA67 174 aa5.49□□□□□ -1.53
SFSWAP-210ENST00000541286 MDN1Q9NU22 5596 aa5.35□□□□□ -1.55
SFSWAP-210ENST00000541286 KRTAP19-5Q3LI72 72 aa5.31□□□□□ -1.56
SFSWAP-210ENST00000541286 DSTQ03001 7570 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms