RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 LINC01554Q52M75 96 aa8.32□□□□□ -1.08
CHMP1A-202ENST00000535997 XP32Q5T750 250 aa8.28□□□□□ -1.08
CHMP1A-202ENST00000535997 RYR1P21817 5038 aa8.28□□□□□ -1.08
CHMP1A-202ENST00000535997 MYCBP2O75592 4640 aa8.24□□□□□ -1.09
CHMP1A-202ENST00000535997 CSAG1Q6PB30 78 aa8.23□□□□□ -1.09
CHMP1A-202ENST00000535997 KRTAP3-3Q9BYR6 98 aa8.23□□□□□ -1.09
CHMP1A-202ENST00000535997 RYR3Q15413 4870 aa8.2□□□□□ -1.1
CHMP1A-202ENST00000535997 K7ERS5 55 aa8.18□□□□□ -1.1
CHMP1A-202ENST00000535997 KRTAP10-6P60371 365 aaPredicted RBP8.17□□□□□ -1.1
CHMP1A-202ENST00000535997 S4R3F8 94 aa8.15□□□□□ -1.1
CHMP1A-202ENST00000535997 KRTAP17-1Q9BYP8 105 aa8.15□□□□□ -1.1
CHMP1A-202ENST00000535997 MT1HL1P0DM35 61 aa8.14□□□□□ -1.11
CHMP1A-202ENST00000535997 KIAA1109Q2LD37 5005 aa8.12□□□□□ -1.11
CHMP1A-202ENST00000535997 KRTAP3-2Q9BYR7 98 aa8.1□□□□□ -1.11
CHMP1A-202ENST00000535997 KRTAP25-1Q3LHN0 102 aa8.04□□□□□ -1.12
CHMP1A-202ENST00000535997 KRTAP13-4Q3LI77 160 aa8.03□□□□□ -1.12
CHMP1A-202ENST00000535997 TPRXLQ17RH7 258 aa8.01□□□□□ -1.13
CHMP1A-202ENST00000535997 LRP2P98164 4655 aa7.99□□□□□ -1.13
CHMP1A-202ENST00000535997 P0C880 135 aa7.98□□□□□ -1.13
CHMP1A-202ENST00000535997 LPAP08519 4548 aa7.97□□□□□ -1.13
CHMP1A-202ENST00000535997 ROMO1P60602 79 aa7.96□□□□□ -1.13
CHMP1A-202ENST00000535997 A0A0D9SG42 100 aa7.96□□□□□ -1.14
CHMP1A-202ENST00000535997 EPPK1P58107 5090 aaKnown RBP7.89□□□□□ -1.15
CHMP1A-202ENST00000535997 CRIPTQ9P021 101 aa7.86□□□□□ -1.15
CHMP1A-202ENST00000535997 ABCA13Q86UQ4 5058 aa7.83□□□□□ -1.16
CHMP1A-202ENST00000535997 H3BS24 57 aa7.82□□□□□ -1.16
CHMP1A-202ENST00000535997 M0QZ58 72 aa7.81□□□□□ -1.16
CHMP1A-202ENST00000535997 KRTAP12-2P59991 146 aa7.78□□□□□ -1.16
CHMP1A-202ENST00000535997 KRTAP12-1P59990 96 aa7.75□□□□□ -1.17
CHMP1A-202ENST00000535997 KRTAP4-5Q9BYR2 181 aa7.73□□□□□ -1.17
CHMP1A-202ENST00000535997 SPINT4Q6UDR6 99 aa7.72□□□□□ -1.17
CHMP1A-202ENST00000535997 SEC61BP60468 96 aaKnown RBP7.72□□□□□ -1.17
CHMP1A-202ENST00000535997 MUC17Q685J3 4493 aa7.65□□□□□ -1.18
CHMP1A-202ENST00000535997 BIRC6Q9NR09 4857 aa7.59□□□□□ -1.19
CHMP1A-202ENST00000535997 C10orf95Q9H7T3 257 aa7.59□□□□□ -1.19
CHMP1A-202ENST00000535997 R4GN34 69 aa7.58□□□□□ -1.2
CHMP1A-202ENST00000535997 J3QL48 77 aa7.55□□□□□ -1.2
CHMP1A-202ENST00000535997 KRTAP4-1Q9BYQ7 146 aa7.54□□□□□ -1.2
CHMP1A-202ENST00000535997 HERC2O95714 4834 aa7.53□□□□□ -1.2
CHMP1A-202ENST00000535997 KRTAP19-2Q3LHN2 52 aa7.45□□□□□ -1.22
CHMP1A-202ENST00000535997 LORP23490 312 aaPredicted RBP7.44□□□□□ -1.22
CHMP1A-202ENST00000535997 KRTAP15-1Q3LI76 137 aa7.34□□□□□ -1.24
CHMP1A-202ENST00000535997 MUC2Q02817 5179 aa7.3□□□□□ -1.24
CHMP1A-202ENST00000535997 FLGP20930 4061 aaPredicted RBP7.3□□□□□ -1.24
CHMP1A-202ENST00000535997 PCLOQ9Y6V0 5065 aa7.22□□□□□ -1.25
CHMP1A-202ENST00000535997 NDUFAF8A1L188 74 aa7.2□□□□□ -1.26
CHMP1A-202ENST00000535997 CAMK2N1Q7Z7J9 78 aa7.18□□□□□ -1.26
CHMP1A-202ENST00000535997 HERC1Q15751 4861 aa7.13□□□□□ -1.27
CHMP1A-202ENST00000535997 PP632Q6XCG6 107 aa7.11□□□□□ -1.27
CHMP1A-202ENST00000535997 HMCN2Q8NDA2 5059 aa7.11□□□□□ -1.27
CHMP1A-202ENST00000535997 PLAC4Q8WY50 150 aa7.06□□□□□ -1.28
CHMP1A-202ENST00000535997 LCE2CQ5TA81 110 aa7□□□□□ -1.29
CHMP1A-202ENST00000535997 FAT4Q6V0I7 4981 aa6.95□□□□□ -1.3
CHMP1A-202ENST00000535997 TNP1P09430 55 aa6.94□□□□□ -1.3
CHMP1A-202ENST00000535997 KRTAP23-1A1A580 65 aa6.92□□□□□ -1.3
CHMP1A-202ENST00000535997 SPRR2GQ9BYE4 73 aa6.91□□□□□ -1.3
CHMP1A-202ENST00000535997 KRTAP19-1Q8IUB9 90 aa6.84□□□□□ -1.31
CHMP1A-202ENST00000535997 M0R2T5 61 aa6.83□□□□□ -1.32
CHMP1A-202ENST00000535997 MT1HP80294 61 aa6.8□□□□□ -1.32
CHMP1A-202ENST00000535997 RNF213Q63HN8 5207 aa6.79□□□□□ -1.32
CHMP1A-202ENST00000535997 UBR4Q5T4S7 5183 aa6.74□□□□□ -1.33
CHMP1A-202ENST00000535997 LUZP6Q538Z0 58 aa6.73□□□□□ -1.33
CHMP1A-202ENST00000535997 KRTAP10-10P60014 251 aa6.7□□□□□ -1.34
CHMP1A-202ENST00000535997 MT2AP02795 61 aa6.69□□□□□ -1.34
CHMP1A-202ENST00000535997 MT1FP04733 61 aa6.67□□□□□ -1.34
CHMP1A-202ENST00000535997 KRTAP9-8Q9BYQ0 159 aa6.67□□□□□ -1.34
CHMP1A-202ENST00000535997 KRTAP19-8Q3LI54 63 aa6.6□□□□□ -1.35
CHMP1A-202ENST00000535997 SPRR5A0A1B0GTR4 108 aa6.59□□□□□ -1.35
CHMP1A-202ENST00000535997 LCE3AQ5TA76 89 aa6.52□□□□□ -1.37
CHMP1A-202ENST00000535997 A0A0A0MQY5 61 aa6.51□□□□□ -1.37
CHMP1A-202ENST00000535997 MT1BP07438 61 aa6.47□□□□□ -1.37
CHMP1A-202ENST00000535997 KRTAP10-5P60370 271 aa6.44□□□□□ -1.38
CHMP1A-202ENST00000535997 MT1XP80297 61 aa6.43□□□□□ -1.38
CHMP1A-202ENST00000535997 KRTAP8-1Q8IUC2 63 aa6.42□□□□□ -1.38
CHMP1A-202ENST00000535997 KRTAP9-3Q9BYQ3 159 aa6.39□□□□□ -1.39
CHMP1A-202ENST00000535997 KRTAP10-12P60413 245 aa6.29□□□□□ -1.4
CHMP1A-202ENST00000535997 KRTAP12-3P60328 96 aa6.25□□□□□ -1.41
CHMP1A-202ENST00000535997 PRO2289Q9P1D8 64 aa6.25□□□□□ -1.41
CHMP1A-202ENST00000535997 KRTAP10-7P60409 375 aaPredicted RBP6.22□□□□□ -1.41
CHMP1A-202ENST00000535997 LCE2BO14633 110 aa6.11□□□□□ -1.43
CHMP1A-202ENST00000535997 LCE2AQ5TA79 106 aaPredicted RBP6.03□□□□□ -1.44
CHMP1A-202ENST00000535997 USH2AO75445 5202 aa5.98□□□□□ -1.45
CHMP1A-202ENST00000535997 KRTAP19-5Q3LI72 72 aa5.97□□□□□ -1.45
CHMP1A-202ENST00000535997 LCE3CQ5T5A8 94 aa5.9□□□□□ -1.47
CHMP1A-202ENST00000535997 KMT2DO14686 5537 aa5.88□□□□□ -1.47
CHMP1A-202ENST00000535997 INE1O15225 51 aa5.86□□□□□ -1.47
CHMP1A-202ENST00000535997 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
CHMP1A-202ENST00000535997 KRTAP4-8Q9BYQ9 185 aa5.83□□□□□ -1.48
CHMP1A-202ENST00000535997 KRTAP19-7Q3SYF9 63 aa5.73□□□□□ -1.49
CHMP1A-202ENST00000535997 LCE2DQ5TA82 110 aaPredicted RBP5.72□□□□□ -1.49
CHMP1A-202ENST00000535997 KRTAP19-4Q3LI73 84 aa5.71□□□□□ -1.5
CHMP1A-202ENST00000535997 KRTAP9-6A8MVA2 160 aa5.63□□□□□ -1.51
CHMP1A-202ENST00000535997 SSPOA2VEC9 5147 aa5.63□□□□□ -1.51
CHMP1A-202ENST00000535997 KRTAP9-2Q9BYQ4 174 aa5.58□□□□□ -1.52
CHMP1A-202ENST00000535997 MT1EP04732 61 aa5.57□□□□□ -1.52
CHMP1A-202ENST00000535997 MT1LQ93083 61 aa5.56□□□□□ -1.52
CHMP1A-202ENST00000535997 KRTAP4-7Q9BYR0 210 aa5.54□□□□□ -1.52
CHMP1A-202ENST00000535997 KRTAP19-6Q3LI70 58 aa5.53□□□□□ -1.52
CHMP1A-202ENST00000535997 FSIP2Q5CZC0 6907 aa5.51□□□□□ -1.53
CHMP1A-202ENST00000535997 KRTAP2-3P0C7H8 128 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms