RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 SSPOA2VEC9 5147 aa10.54□□□□□ -0.72
SFSWAP-204ENST00000535399 FAM236AA0A1B0GUQ0 79 aa10.51□□□□□ -0.73
SFSWAP-204ENST00000535399 FAM236BA0A1B0GV22 79 aa10.51□□□□□ -0.73
SFSWAP-204ENST00000535399 A8MUN3 132 aa10.51□□□□□ -0.73
SFSWAP-204ENST00000535399 TRAV7A0A075B6U4 112 aa10.45□□□□□ -0.74
SFSWAP-204ENST00000535399 SMIM20Q8N5G0 67 aa10.44□□□□□ -0.74
SFSWAP-204ENST00000535399 NDUFC1O43677 76 aa10.39□□□□□ -0.75
SFSWAP-204ENST00000535399 KRTAP19-1Q8IUB9 90 aa10.35□□□□□ -0.75
SFSWAP-204ENST00000535399 DMAC1Q96GE9 116 aa10.34□□□□□ -0.75
SFSWAP-204ENST00000535399 FCGBPQ9Y6R7 5405 aaPredicted RBP10.25□□□□□ -0.77
SFSWAP-204ENST00000535399 KRTAP9-7A8MTY7 169 aa10.25□□□□□ -0.77
SFSWAP-204ENST00000535399 H0YAA0 97 aa10.25□□□□□ -0.77
SFSWAP-204ENST00000535399 SPRR2GQ9BYE4 73 aa10.25□□□□□ -0.77
SFSWAP-204ENST00000535399 KRTAP19-6Q3LI70 58 aa10.22□□□□□ -0.77
SFSWAP-204ENST00000535399 SERP2Q8N6R1 65 aa10.2□□□□□ -0.78
SFSWAP-204ENST00000535399 SNURFQ9Y675 71 aa10.2□□□□□ -0.78
SFSWAP-204ENST00000535399 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.18□□□□□ -0.78
SFSWAP-204ENST00000535399 KRTAP19-8Q3LI54 63 aa10.15□□□□□ -0.78
SFSWAP-204ENST00000535399 CRIPTQ9P021 101 aa10.15□□□□□ -0.78
SFSWAP-204ENST00000535399 ADM2Q7Z4H4 148 aa10.14□□□□□ -0.79
SFSWAP-204ENST00000535399 C20orf197Q8N268 126 aa10.13□□□□□ -0.79
SFSWAP-204ENST00000535399 MT1BP07438 61 aa10.12□□□□□ -0.79
SFSWAP-204ENST00000535399 ACYP2P14621 99 aa10.12□□□□□ -0.79
SFSWAP-204ENST00000535399 Q5VV11 94 aa10.09□□□□□ -0.79
SFSWAP-204ENST00000535399 SPANXA2-OT1Q8N9U9 137 aa10.03□□□□□ -0.8
SFSWAP-204ENST00000535399 P0C880 135 aa9.97□□□□□ -0.81
SFSWAP-204ENST00000535399 KRTAP3-2Q9BYR7 98 aa9.97□□□□□ -0.81
SFSWAP-204ENST00000535399 COX7CP15954 63 aa9.96□□□□□ -0.82
SFSWAP-204ENST00000535399 CHKB-CPT1BH3BT56 60 aa9.92□□□□□ -0.82
SFSWAP-204ENST00000535399 SPTSSBQ8NFR3 76 aa9.92□□□□□ -0.82
SFSWAP-204ENST00000535399 MACF1Q9UPN3 7388 aaKnown RBP9.88□□□□□ -0.83
SFSWAP-204ENST00000535399 A6NN06 94 aa9.84□□□□□ -0.83
SFSWAP-204ENST00000535399 R4GN34 69 aa9.83□□□□□ -0.84
SFSWAP-204ENST00000535399 KRTAP10-5P60370 271 aa9.81□□□□□ -0.84
SFSWAP-204ENST00000535399 CYSTM1Q9H1C7 97 aa9.81□□□□□ -0.84
SFSWAP-204ENST00000535399 M0QZ58 72 aa9.78□□□□□ -0.84
SFSWAP-204ENST00000535399 H7BZZ5 65 aa9.77□□□□□ -0.85
SFSWAP-204ENST00000535399 ANAPC13Q9BS18 74 aa9.75□□□□□ -0.85
SFSWAP-204ENST00000535399 COA5Q86WW8 74 aa9.73□□□□□ -0.85
SFSWAP-204ENST00000535399 SYNE2Q8WXH0 6885 aaKnown RBP9.71□□□□□ -0.85
SFSWAP-204ENST00000535399 PLAC4Q8WY50 150 aa9.64□□□□□ -0.87
SFSWAP-204ENST00000535399 LINC01554Q52M75 96 aa9.62□□□□□ -0.87
SFSWAP-204ENST00000535399 CCDC179H3BU77 68 aa9.58□□□□□ -0.88
SFSWAP-204ENST00000535399 MT1XP80297 61 aa9.55□□□□□ -0.88
SFSWAP-204ENST00000535399 KRTAP6-3Q3LI67 103 aa9.51□□□□□ -0.89
SFSWAP-204ENST00000535399 PRO2289Q9P1D8 64 aa9.5□□□□□ -0.89
SFSWAP-204ENST00000535399 KRTAP13-4Q3LI77 160 aa9.45□□□□□ -0.9
SFSWAP-204ENST00000535399 SEC61GP60059 68 aa9.41□□□□□ -0.9
SFSWAP-204ENST00000535399 SERP1Q9Y6X1 66 aa9.39□□□□□ -0.91
SFSWAP-204ENST00000535399 ATP5EP56381 51 aaPredicted RBP9.34□□□□□ -0.91
SFSWAP-204ENST00000535399 A0A1B0GU33 70 aa9.25□□□□□ -0.93
SFSWAP-204ENST00000535399 KRTAP12-2P59991 146 aa9.25□□□□□ -0.93
SFSWAP-204ENST00000535399 TMEM258P61165 79 aa9.21□□□□□ -0.94
SFSWAP-204ENST00000535399 SPATA8Q6RVD6 105 aa9.21□□□□□ -0.94
SFSWAP-204ENST00000535399 KMT2DO14686 5537 aa9.21□□□□□ -0.94
SFSWAP-204ENST00000535399 A0A1B0GU69 56 aa9.2□□□□□ -0.94
SFSWAP-204ENST00000535399 KRTAP5-9P26371 169 aa9.2□□□□□ -0.94
SFSWAP-204ENST00000535399 MUC12Q9UKN1 5478 aa9.16□□□□□ -0.94
SFSWAP-204ENST00000535399 A0A0D9SG42 100 aa9.15□□□□□ -0.94
SFSWAP-204ENST00000535399 NEBP20929 6669 aa9.14□□□□□ -0.95
SFSWAP-204ENST00000535399 KRTAP10-7P60409 375 aaPredicted RBP9.12□□□□□ -0.95
SFSWAP-204ENST00000535399 CAMK2N1Q7Z7J9 78 aa9.08□□□□□ -0.96
SFSWAP-204ENST00000535399 KRTAP10-12P60413 245 aa9.07□□□□□ -0.96
SFSWAP-204ENST00000535399 KRTAP4-8A0A0G2JLE6 195 aa9.04□□□□□ -0.96
SFSWAP-204ENST00000535399 KRTAP8-1Q8IUC2 63 aa9.04□□□□□ -0.96
SFSWAP-204ENST00000535399 KRTAP4-8Q9BYQ9 185 aa9.04□□□□□ -0.96
SFSWAP-204ENST00000535399 LINC01558Q9Y6Z2 57 aa9.03□□□□□ -0.96
SFSWAP-204ENST00000535399 KRTAP12-1P59990 96 aa9.01□□□□□ -0.97
SFSWAP-204ENST00000535399 SPINT4Q6UDR6 99 aa8.99□□□□□ -0.97
SFSWAP-204ENST00000535399 PRR15LQ9BU68 103 aa8.99□□□□□ -0.97
SFSWAP-204ENST00000535399 MDN1Q9NU22 5596 aa8.98□□□□□ -0.97
SFSWAP-204ENST00000535399 SPRR2FQ96RM1 72 aa8.98□□□□□ -0.97
SFSWAP-204ENST00000535399 SMIM26A0A096LP01 95 aa8.97□□□□□ -0.97
SFSWAP-204ENST00000535399 KRTAP20-1Q3LI63 56 aa8.97□□□□□ -0.97
SFSWAP-204ENST00000535399 A8MU10 97 aa8.94□□□□□ -0.98
SFSWAP-204ENST00000535399 SPRR2EP22531 72 aa8.78□□□□□ -1
SFSWAP-204ENST00000535399 SPRR2BP35325 72 aa8.78□□□□□ -1
SFSWAP-204ENST00000535399 SPRR2AP35326 72 aa8.78□□□□□ -1
SFSWAP-204ENST00000535399 LCE1AQ5T7P2 110 aa8.74□□□□□ -1.01
SFSWAP-204ENST00000535399 UQCR11O14957 56 aa8.72□□□□□ -1.01
SFSWAP-204ENST00000535399 V9GYY9 64 aa8.64□□□□□ -1.03
SFSWAP-204ENST00000535399 Q1T7F1 81 aa8.63□□□□□ -1.03
SFSWAP-204ENST00000535399 PCP4P48539 62 aa8.61□□□□□ -1.03
SFSWAP-204ENST00000535399 C10orf95Q9H7T3 257 aa8.59□□□□□ -1.03
SFSWAP-204ENST00000535399 PSPHP1O15172 72 aa8.57□□□□□ -1.04
SFSWAP-204ENST00000535399 KRTAP2-3P0C7H8 128 aa8.57□□□□□ -1.04
SFSWAP-204ENST00000535399 KRTAP2-4Q9BYR9 128 aa8.57□□□□□ -1.04
SFSWAP-204ENST00000535399 MIR22HGQ0VDD5 57 aa8.56□□□□□ -1.04
SFSWAP-204ENST00000535399 KRTAP19-7Q3SYF9 63 aa8.55□□□□□ -1.04
SFSWAP-204ENST00000535399 SPRR2DP22532 72 aa8.48□□□□□ -1.05
SFSWAP-204ENST00000535399 TNP1P09430 55 aa8.47□□□□□ -1.05
SFSWAP-204ENST00000535399 MT1EP04732 61 aa8.45□□□□□ -1.06
SFSWAP-204ENST00000535399 RPS28P62857 69 aaKnown RBP8.44□□□□□ -1.06
SFSWAP-204ENST00000535399 KRTAP19-5Q3LI72 72 aa8.39□□□□□ -1.07
SFSWAP-204ENST00000535399 LCE3AQ5TA76 89 aa8.35□□□□□ -1.07
SFSWAP-204ENST00000535399 K7ERS5 55 aa8.3□□□□□ -1.08
SFSWAP-204ENST00000535399 KRTAP19-3Q7Z4W3 81 aa8.3□□□□□ -1.08
SFSWAP-204ENST00000535399 LCE5AQ5TCM9 118 aa8.29□□□□□ -1.08
SFSWAP-204ENST00000535399 A6NED7 52 aa8.28□□□□□ -1.08
SFSWAP-204ENST00000535399 KRTAP2-2Q9BYT5 123 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms