RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 H3BPC8 53 aa9.19□□□□□ -0.94
CPSF1-209ENST00000532725 A8MUN3 132 aa9.14□□□□□ -0.95
CPSF1-209ENST00000532725 FAM236AA0A1B0GUQ0 79 aa9.09□□□□□ -0.95
CPSF1-209ENST00000532725 FAM236BA0A1B0GV22 79 aa9.09□□□□□ -0.95
CPSF1-209ENST00000532725 NDUFC1O43677 76 aa9.06□□□□□ -0.96
CPSF1-209ENST00000532725 KRTAP19-1Q8IUB9 90 aa9.06□□□□□ -0.96
CPSF1-209ENST00000532725 TRAV7A0A075B6U4 112 aa9.05□□□□□ -0.96
CPSF1-209ENST00000532725 SMIM20Q8N5G0 67 aa9.05□□□□□ -0.96
CPSF1-209ENST00000532725 KRTAP19-6Q3LI70 58 aa8.97□□□□□ -0.97
CPSF1-209ENST00000532725 DMAC1Q96GE9 116 aa8.97□□□□□ -0.97
CPSF1-209ENST00000532725 SPRR2GQ9BYE4 73 aa8.96□□□□□ -0.98
CPSF1-209ENST00000532725 FCGBPQ9Y6R7 5405 aaPredicted RBP8.95□□□□□ -0.98
CPSF1-209ENST00000532725 H0YAA0 97 aa8.94□□□□□ -0.98
CPSF1-209ENST00000532725 CRIPTQ9P021 101 aa8.88□□□□□ -0.99
CPSF1-209ENST00000532725 KRTAP19-8Q3LI54 63 aa8.87□□□□□ -0.99
CPSF1-209ENST00000532725 MT1BP07438 61 aa8.84□□□□□ -0.99
CPSF1-209ENST00000532725 ADM2Q7Z4H4 148 aa8.84□□□□□ -0.99
CPSF1-209ENST00000532725 SNURFQ9Y675 71 aa8.84□□□□□ -0.99
CPSF1-209ENST00000532725 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.83□□□□□ -1
CPSF1-209ENST00000532725 SERP2Q8N6R1 65 aa8.83□□□□□ -1
CPSF1-209ENST00000532725 ACYP2P14621 99 aa8.81□□□□□ -1
CPSF1-209ENST00000532725 Q5VV11 94 aa8.81□□□□□ -1
CPSF1-209ENST00000532725 C20orf197Q8N268 126 aa8.77□□□□□ -1.01
CPSF1-209ENST00000532725 SPANXA2-OT1Q8N9U9 137 aa8.7□□□□□ -1.02
CPSF1-209ENST00000532725 KRTAP3-2Q9BYR7 98 aa8.69□□□□□ -1.02
CPSF1-209ENST00000532725 P0C880 135 aa8.68□□□□□ -1.02
CPSF1-209ENST00000532725 KRTAP9-7A8MTY7 169 aa8.64□□□□□ -1.03
CPSF1-209ENST00000532725 MACF1Q9UPN3 7388 aaKnown RBP8.63□□□□□ -1.03
CPSF1-209ENST00000532725 COX7CP15954 63 aa8.62□□□□□ -1.03
CPSF1-209ENST00000532725 SPTSSBQ8NFR3 76 aa8.62□□□□□ -1.03
CPSF1-209ENST00000532725 A6NN06 94 aa8.61□□□□□ -1.03
CPSF1-209ENST00000532725 CHKB-CPT1BH3BT56 60 aa8.6□□□□□ -1.03
CPSF1-209ENST00000532725 KRTAP10-5P60370 271 aa8.58□□□□□ -1.04
CPSF1-209ENST00000532725 R4GN34 69 aa8.57□□□□□ -1.04
CPSF1-209ENST00000532725 SYNE2Q8WXH0 6885 aaKnown RBP8.53□□□□□ -1.04
CPSF1-209ENST00000532725 M0QZ58 72 aa8.52□□□□□ -1.05
CPSF1-209ENST00000532725 CYSTM1Q9H1C7 97 aa8.47□□□□□ -1.05
CPSF1-209ENST00000532725 H7BZZ5 65 aa8.45□□□□□ -1.06
CPSF1-209ENST00000532725 PLAC4Q8WY50 150 aa8.43□□□□□ -1.06
CPSF1-209ENST00000532725 COA5Q86WW8 74 aa8.42□□□□□ -1.06
CPSF1-209ENST00000532725 ANAPC13Q9BS18 74 aa8.41□□□□□ -1.06
CPSF1-209ENST00000532725 LINC01554Q52M75 96 aa8.37□□□□□ -1.07
CPSF1-209ENST00000532725 KRTAP6-3Q3LI67 103 aa8.36□□□□□ -1.07
CPSF1-209ENST00000532725 MT1XP80297 61 aa8.35□□□□□ -1.07
CPSF1-209ENST00000532725 PRO2289Q9P1D8 64 aa8.31□□□□□ -1.08
CPSF1-209ENST00000532725 CCDC179H3BU77 68 aa8.27□□□□□ -1.09
CPSF1-209ENST00000532725 KRTAP13-4Q3LI77 160 aa8.21□□□□□ -1.1
CPSF1-209ENST00000532725 SEC61GP60059 68 aa8.17□□□□□ -1.1
CPSF1-209ENST00000532725 SERP1Q9Y6X1 66 aa8.16□□□□□ -1.1
CPSF1-209ENST00000532725 KRTAP12-2P59991 146 aa8.09□□□□□ -1.11
CPSF1-209ENST00000532725 KRTAP5-9P26371 169 aa8.08□□□□□ -1.12
CPSF1-209ENST00000532725 A0A1B0GU33 70 aa8.05□□□□□ -1.12
CPSF1-209ENST00000532725 ATP5EP56381 51 aaPredicted RBP8.05□□□□□ -1.12
CPSF1-209ENST00000532725 KMT2DO14686 5537 aa8.02□□□□□ -1.13
CPSF1-209ENST00000532725 SPATA8Q6RVD6 105 aa8.01□□□□□ -1.13
CPSF1-209ENST00000532725 MUC12Q9UKN1 5478 aa7.99□□□□□ -1.13
CPSF1-209ENST00000532725 A0A1B0GU69 56 aa7.98□□□□□ -1.13
CPSF1-209ENST00000532725 NEBP20929 6669 aa7.97□□□□□ -1.13
CPSF1-209ENST00000532725 KRTAP10-7P60409 375 aaPredicted RBP7.97□□□□□ -1.13
CPSF1-209ENST00000532725 A0A0D9SG42 100 aa7.95□□□□□ -1.14
CPSF1-209ENST00000532725 TMEM258P61165 79 aa7.94□□□□□ -1.14
CPSF1-209ENST00000532725 KRTAP4-8A0A0G2JLE6 195 aa7.93□□□□□ -1.14
CPSF1-209ENST00000532725 KRTAP10-12P60413 245 aa7.93□□□□□ -1.14
CPSF1-209ENST00000532725 KRTAP4-8Q9BYQ9 185 aa7.93□□□□□ -1.14
CPSF1-209ENST00000532725 KRTAP8-1Q8IUC2 63 aa7.91□□□□□ -1.14
CPSF1-209ENST00000532725 CAMK2N1Q7Z7J9 78 aa7.9□□□□□ -1.14
CPSF1-209ENST00000532725 SPRR2FQ96RM1 72 aa7.86□□□□□ -1.15
CPSF1-209ENST00000532725 KRTAP12-1P59990 96 aa7.83□□□□□ -1.16
CPSF1-209ENST00000532725 LINC01558Q9Y6Z2 57 aa7.83□□□□□ -1.16
CPSF1-209ENST00000532725 SPINT4Q6UDR6 99 aa7.82□□□□□ -1.16
CPSF1-209ENST00000532725 SMIM26A0A096LP01 95 aa7.79□□□□□ -1.16
CPSF1-209ENST00000532725 PRR15LQ9BU68 103 aa7.79□□□□□ -1.16
CPSF1-209ENST00000532725 MDN1Q9NU22 5596 aa7.79□□□□□ -1.16
CPSF1-209ENST00000532725 A8MU10 97 aa7.75□□□□□ -1.17
CPSF1-209ENST00000532725 SPRR2EP22531 72 aa7.68□□□□□ -1.18
CPSF1-209ENST00000532725 SPRR2BP35325 72 aa7.68□□□□□ -1.18
CPSF1-209ENST00000532725 SPRR2AP35326 72 aa7.68□□□□□ -1.18
CPSF1-209ENST00000532725 LCE1AQ5T7P2 110 aa7.66□□□□□ -1.18
CPSF1-209ENST00000532725 KRTAP20-1Q3LI63 56 aa7.59□□□□□ -1.19
CPSF1-209ENST00000532725 UQCR11O14957 56 aa7.56□□□□□ -1.2
CPSF1-209ENST00000532725 KRTAP2-3P0C7H8 128 aa7.5□□□□□ -1.21
CPSF1-209ENST00000532725 KRTAP2-4Q9BYR9 128 aa7.5□□□□□ -1.21
CPSF1-209ENST00000532725 C10orf95Q9H7T3 257 aa7.49□□□□□ -1.21
CPSF1-209ENST00000532725 Q1T7F1 81 aa7.47□□□□□ -1.21
CPSF1-209ENST00000532725 V9GYY9 64 aa7.47□□□□□ -1.21
CPSF1-209ENST00000532725 KRTAP19-7Q3SYF9 63 aa7.46□□□□□ -1.22
CPSF1-209ENST00000532725 SPRR2DP22532 72 aa7.42□□□□□ -1.22
CPSF1-209ENST00000532725 PSPHP1O15172 72 aa7.41□□□□□ -1.22
CPSF1-209ENST00000532725 PCP4P48539 62 aa7.41□□□□□ -1.22
CPSF1-209ENST00000532725 MIR22HGQ0VDD5 57 aa7.41□□□□□ -1.22
CPSF1-209ENST00000532725 MT1EP04732 61 aa7.37□□□□□ -1.23
CPSF1-209ENST00000532725 TNP1P09430 55 aa7.37□□□□□ -1.23
CPSF1-209ENST00000532725 KRTAP19-5Q3LI72 72 aa7.33□□□□□ -1.24
CPSF1-209ENST00000532725 RPS28P62857 69 aaKnown RBP7.3□□□□□ -1.24
CPSF1-209ENST00000532725 LCE5AQ5TCM9 118 aa7.27□□□□□ -1.25
CPSF1-209ENST00000532725 KRTAP2-2Q9BYT5 123 aa7.27□□□□□ -1.25
CPSF1-209ENST00000532725 KRTAP2-1Q9BYU5 128 aa7.27□□□□□ -1.25
CPSF1-209ENST00000532725 LCE3AQ5TA76 89 aa7.26□□□□□ -1.25
CPSF1-209ENST00000532725 KRTAP19-3Q7Z4W3 81 aa7.26□□□□□ -1.25
CPSF1-209ENST00000532725 LCE3BQ5TA77 95 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms