RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 VPS13BQ7Z7G8 4022 aa5.68□□□□□ -1.5
TRIM3-211ENST00000532542 KRTAP3-1Q9BYR8 98 aa5.67□□□□□ -1.5
TRIM3-211ENST00000532542 A6NN06 94 aa5.65□□□□□ -1.5
TRIM3-211ENST00000532542 FRAS1Q86XX4 4008 aa5.65□□□□□ -1.51
TRIM3-211ENST00000532542 RYR2Q92736 4967 aa5.64□□□□□ -1.51
TRIM3-211ENST00000532542 M0R2T5 61 aa5.63□□□□□ -1.51
TRIM3-211ENST00000532542 M0QZ58 72 aa5.62□□□□□ -1.51
TRIM3-211ENST00000532542 KRTAP4-5Q9BYR2 181 aa5.62□□□□□ -1.51
TRIM3-211ENST00000532542 CRIPTQ9P021 101 aa5.6□□□□□ -1.51
TRIM3-211ENST00000532542 PKD1P98161 4303 aa5.57□□□□□ -1.52
TRIM3-211ENST00000532542 H0YAA0 97 aa5.56□□□□□ -1.52
TRIM3-211ENST00000532542 APOBP04114 4563 aaKnown RBP5.56□□□□□ -1.52
TRIM3-211ENST00000532542 PKHD1P08F94 4074 aa5.55□□□□□ -1.52
TRIM3-211ENST00000532542 ROMO1P60602 79 aa5.53□□□□□ -1.52
TRIM3-211ENST00000532542 CAMK2N1Q7Z7J9 78 aa5.53□□□□□ -1.52
TRIM3-211ENST00000532542 KIAA1109Q2LD37 5005 aa5.52□□□□□ -1.53
TRIM3-211ENST00000532542 RYR1P21817 5038 aa5.51□□□□□ -1.53
TRIM3-211ENST00000532542 RYR3Q15413 4870 aa5.5□□□□□ -1.53
TRIM3-211ENST00000532542 P0C880 135 aa5.49□□□□□ -1.53
TRIM3-211ENST00000532542 KMT2CQ8NEZ4 4911 aaKnown RBP5.48□□□□□ -1.53
TRIM3-211ENST00000532542 KRTAP17-1Q9BYP8 105 aa5.43□□□□□ -1.54
TRIM3-211ENST00000532542 KRTAP3-3Q9BYR6 98 aa5.41□□□□□ -1.54
TRIM3-211ENST00000532542 LRP1Q07954 4544 aaKnown RBP5.4□□□□□ -1.55
TRIM3-211ENST00000532542 KRTAP10-6P60371 365 aaPredicted RBP5.39□□□□□ -1.55
TRIM3-211ENST00000532542 HSPG2P98160 4391 aa5.36□□□□□ -1.55
TRIM3-211ENST00000532542 KRTAP25-1Q3LHN0 102 aa5.34□□□□□ -1.55
TRIM3-211ENST00000532542 LUZP6Q538Z0 58 aa5.33□□□□□ -1.56
TRIM3-211ENST00000532542 PLAC4Q8WY50 150 aa5.32□□□□□ -1.56
TRIM3-211ENST00000532542 KRTAP3-2Q9BYR7 98 aa5.32□□□□□ -1.56
TRIM3-211ENST00000532542 FAT3Q8TDW7 4589 aa5.29□□□□□ -1.56
TRIM3-211ENST00000532542 MYCBP2O75592 4640 aa5.28□□□□□ -1.56
TRIM3-211ENST00000532542 KRTAP13-4Q3LI77 160 aa5.28□□□□□ -1.56
TRIM3-211ENST00000532542 NDUFAF8A1L188 74 aa5.25□□□□□ -1.57
TRIM3-211ENST00000532542 PKHD1L1Q86WI1 4243 aa5.23□□□□□ -1.57
TRIM3-211ENST00000532542 KRTAP12-2P59991 146 aa5.23□□□□□ -1.57
TRIM3-211ENST00000532542 KRTAP12-1P59990 96 aa5.22□□□□□ -1.57
TRIM3-211ENST00000532542 KRTAP10-10P60014 251 aa5.19□□□□□ -1.58
TRIM3-211ENST00000532542 HERC2O95714 4834 aa5.19□□□□□ -1.58
TRIM3-211ENST00000532542 KRTAP4-1Q9BYQ7 146 aa5.18□□□□□ -1.58
TRIM3-211ENST00000532542 EPPK1P58107 5090 aaKnown RBP5.17□□□□□ -1.58
TRIM3-211ENST00000532542 BIRC6Q9NR09 4857 aa5.17□□□□□ -1.58
TRIM3-211ENST00000532542 TNXBP22105 4242 aa5.17□□□□□ -1.58
TRIM3-211ENST00000532542 TNP1P09430 55 aa5.14□□□□□ -1.59
TRIM3-211ENST00000532542 C10orf95Q9H7T3 257 aa5.12□□□□□ -1.59
TRIM3-211ENST00000532542 LRP2P98164 4655 aa5.07□□□□□ -1.6
TRIM3-211ENST00000532542 PP632Q6XCG6 107 aa5.07□□□□□ -1.6
TRIM3-211ENST00000532542 ABCA13Q86UQ4 5058 aa5.02□□□□□ -1.61
TRIM3-211ENST00000532542 LORP23490 312 aaPredicted RBP5□□□□□ -1.61
TRIM3-211ENST00000532542 LPAP08519 4548 aa4.94□□□□□ -1.62
TRIM3-211ENST00000532542 PRO2289Q9P1D8 64 aa4.92□□□□□ -1.62
TRIM3-211ENST00000532542 MT1HP80294 61 aa4.89□□□□□ -1.63
TRIM3-211ENST00000532542 HERC1Q15751 4861 aa4.87□□□□□ -1.63
TRIM3-211ENST00000532542 KRTAP19-2Q3LHN2 52 aa4.81□□□□□ -1.64
TRIM3-211ENST00000532542 PCLOQ9Y6V0 5065 aa4.78□□□□□ -1.64
TRIM3-211ENST00000532542 SPRR2GQ9BYE4 73 aa4.78□□□□□ -1.64
TRIM3-211ENST00000532542 MT2AP02795 61 aa4.78□□□□□ -1.64
TRIM3-211ENST00000532542 LCE2CQ5TA81 110 aa4.76□□□□□ -1.65
TRIM3-211ENST00000532542 MT1FP04733 61 aa4.72□□□□□ -1.65
TRIM3-211ENST00000532542 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
TRIM3-211ENST00000532542 FLGP20930 4061 aaPredicted RBP4.68□□□□□ -1.66
TRIM3-211ENST00000532542 HMCN2Q8NDA2 5059 aa4.67□□□□□ -1.66
TRIM3-211ENST00000532542 MUC17Q685J3 4493 aa4.67□□□□□ -1.66
TRIM3-211ENST00000532542 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
TRIM3-211ENST00000532542 KRTAP9-8Q9BYQ0 159 aa4.61□□□□□ -1.67
TRIM3-211ENST00000532542 KRTAP10-12P60413 245 aa4.59□□□□□ -1.67
TRIM3-211ENST00000532542 RNF213Q63HN8 5207 aa4.57□□□□□ -1.68
TRIM3-211ENST00000532542 KRTAP19-8Q3LI54 63 aa4.57□□□□□ -1.68
TRIM3-211ENST00000532542 KRTAP15-1Q3LI76 137 aa4.56□□□□□ -1.68
TRIM3-211ENST00000532542 MUC2Q02817 5179 aa4.53□□□□□ -1.68
TRIM3-211ENST00000532542 LCE3AQ5TA76 89 aa4.53□□□□□ -1.68
TRIM3-211ENST00000532542 UBR4Q5T4S7 5183 aa4.49□□□□□ -1.69
TRIM3-211ENST00000532542 FAT4Q6V0I7 4981 aa4.49□□□□□ -1.69
TRIM3-211ENST00000532542 KRTAP12-3P60328 96 aa4.46□□□□□ -1.7
TRIM3-211ENST00000532542 KRTAP9-3Q9BYQ3 159 aa4.46□□□□□ -1.7
TRIM3-211ENST00000532542 MT1BP07438 61 aa4.45□□□□□ -1.7
TRIM3-211ENST00000532542 MT1XP80297 61 aa4.39□□□□□ -1.71
TRIM3-211ENST00000532542 KRTAP10-5P60370 271 aa4.37□□□□□ -1.71
TRIM3-211ENST00000532542 KRTAP8-1Q8IUC2 63 aa4.34□□□□□ -1.71
TRIM3-211ENST00000532542 LCE2AQ5TA79 106 aaPredicted RBP4.31□□□□□ -1.72
TRIM3-211ENST00000532542 KRTAP10-7P60409 375 aaPredicted RBP4.28□□□□□ -1.72
TRIM3-211ENST00000532542 LCE2BO14633 110 aa4.28□□□□□ -1.72
TRIM3-211ENST00000532542 KRTAP19-5Q3LI72 72 aa4.2□□□□□ -1.74
TRIM3-211ENST00000532542 KRTAP19-4Q3LI73 84 aa4.09□□□□□ -1.75
TRIM3-211ENST00000532542 LCE3CQ5T5A8 94 aa4.06□□□□□ -1.76
TRIM3-211ENST00000532542 KRTAP4-8A0A0G2JLE6 195 aa4.06□□□□□ -1.76
TRIM3-211ENST00000532542 SPRR5A0A1B0GTR4 108 aa4.06□□□□□ -1.76
TRIM3-211ENST00000532542 KRTAP4-8Q9BYQ9 185 aa4.06□□□□□ -1.76
TRIM3-211ENST00000532542 KRTAP19-6Q3LI70 58 aa4.02□□□□□ -1.77
TRIM3-211ENST00000532542 LCE2DQ5TA82 110 aaPredicted RBP3.96□□□□□ -1.77
TRIM3-211ENST00000532542 SPRR2FQ96RM1 72 aa3.96□□□□□ -1.78
TRIM3-211ENST00000532542 FSIP2Q5CZC0 6907 aa3.92□□□□□ -1.78
TRIM3-211ENST00000532542 CRCT1Q9UGL9 99 aa3.92□□□□□ -1.78
TRIM3-211ENST00000532542 INE1O15225 51 aa3.9□□□□□ -1.78
TRIM3-211ENST00000532542 USH2AO75445 5202 aa3.9□□□□□ -1.79
TRIM3-211ENST00000532542 KRTAP9-2Q9BYQ4 174 aa3.88□□□□□ -1.79
TRIM3-211ENST00000532542 MT1EP04732 61 aa3.88□□□□□ -1.79
TRIM3-211ENST00000532542 MT1LQ93083 61 aa3.85□□□□□ -1.79
TRIM3-211ENST00000532542 KRTAP19-7Q3SYF9 63 aa3.84□□□□□ -1.79
TRIM3-211ENST00000532542 MT1GP13640 62 aa3.83□□□□□ -1.8
TRIM3-211ENST00000532542 KRTAP19-3Q7Z4W3 81 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms