RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 KRTAP3-3Q9BYR6 98 aa6.01□□□□□ -1.45
VPS28-211ENST00000530790 H0Y9P7 68 aa6□□□□□ -1.45
VPS28-211ENST00000530790 Q5VV11 94 aa6□□□□□ -1.45
VPS28-211ENST00000530790 SPRR2GQ9BYE4 73 aa6□□□□□ -1.45
VPS28-211ENST00000530790 KLKP1Q107X0 134 aa5.99□□□□□ -1.45
VPS28-211ENST00000530790 MT1BP07438 61 aa5.97□□□□□ -1.45
VPS28-211ENST00000530790 SYNE2Q8WXH0 6885 aaKnown RBP5.97□□□□□ -1.45
VPS28-211ENST00000530790 KRTAP19-8Q3LI54 63 aa5.96□□□□□ -1.46
VPS28-211ENST00000530790 A6NN06 94 aa5.94□□□□□ -1.46
VPS28-211ENST00000530790 IMUPQ9GZP8 106 aa5.93□□□□□ -1.46
VPS28-211ENST00000530790 NDUFC1O43677 76 aa5.92□□□□□ -1.46
VPS28-211ENST00000530790 CRIPTQ9P021 101 aa5.91□□□□□ -1.46
VPS28-211ENST00000530790 A8MUN3 132 aa5.9□□□□□ -1.46
VPS28-211ENST00000530790 KRTAP6-3Q3LI67 103 aa5.9□□□□□ -1.46
VPS28-211ENST00000530790 LINC00208Q96KT6 92 aa5.89□□□□□ -1.47
VPS28-211ENST00000530790 MP68P56378 58 aa5.88□□□□□ -1.47
VPS28-211ENST00000530790 H0YAA0 97 aa5.86□□□□□ -1.47
VPS28-211ENST00000530790 OCR1Q9BZK8 76 aa5.86□□□□□ -1.47
VPS28-211ENST00000530790 KRTAP10-5P60370 271 aa5.84□□□□□ -1.47
VPS28-211ENST00000530790 SCGB1A1P11684 91 aa5.81□□□□□ -1.48
VPS28-211ENST00000530790 ADM2Q7Z4H4 148 aa5.8□□□□□ -1.48
VPS28-211ENST00000530790 H3BPC8 53 aa5.78□□□□□ -1.48
VPS28-211ENST00000530790 TRAV7A0A075B6U4 112 aa5.74□□□□□ -1.49
VPS28-211ENST00000530790 DMAC1Q96GE9 116 aa5.72□□□□□ -1.49
VPS28-211ENST00000530790 SMIM20Q8N5G0 67 aa5.71□□□□□ -1.5
VPS28-211ENST00000530790 C20orf197Q8N268 126 aa5.7□□□□□ -1.5
VPS28-211ENST00000530790 SERP2Q8N6R1 65 aa5.68□□□□□ -1.5
VPS28-211ENST00000530790 R4GN34 69 aa5.68□□□□□ -1.5
VPS28-211ENST00000530790 PRO2289Q9P1D8 64 aa5.66□□□□□ -1.5
VPS28-211ENST00000530790 P0C880 135 aa5.64□□□□□ -1.51
VPS28-211ENST00000530790 PLAC4Q8WY50 150 aa5.64□□□□□ -1.51
VPS28-211ENST00000530790 M0QZ58 72 aa5.63□□□□□ -1.51
VPS28-211ENST00000530790 COX7CP15954 63 aa5.63□□□□□ -1.51
VPS28-211ENST00000530790 KRTAP5-9P26371 169 aa5.63□□□□□ -1.51
VPS28-211ENST00000530790 ANAPC13Q9BS18 74 aa5.62□□□□□ -1.51
VPS28-211ENST00000530790 SNURFQ9Y675 71 aa5.62□□□□□ -1.51
VPS28-211ENST00000530790 NEBP20929 6669 aa5.62□□□□□ -1.51
VPS28-211ENST00000530790 MUC12Q9UKN1 5478 aa5.62□□□□□ -1.51
VPS28-211ENST00000530790 MT1XP80297 61 aa5.59□□□□□ -1.51
VPS28-211ENST00000530790 KRTAP3-2Q9BYR7 98 aa5.58□□□□□ -1.52
VPS28-211ENST00000530790 ACYP2P14621 99 aa5.57□□□□□ -1.52
VPS28-211ENST00000530790 CCDC179H3BU77 68 aa5.55□□□□□ -1.52
VPS28-211ENST00000530790 LINC01554Q52M75 96 aa5.55□□□□□ -1.52
VPS28-211ENST00000530790 CYSTM1Q9H1C7 97 aa5.55□□□□□ -1.52
VPS28-211ENST00000530790 KMT2DO14686 5537 aa5.54□□□□□ -1.52
VPS28-211ENST00000530790 SPTSSBQ8NFR3 76 aa5.54□□□□□ -1.52
VPS28-211ENST00000530790 KRTAP20-1Q3LI63 56 aa5.51□□□□□ -1.53
VPS28-211ENST00000530790 CHKB-CPT1BH3BT56 60 aa5.5□□□□□ -1.53
VPS28-211ENST00000530790 MDN1Q9NU22 5596 aa5.49□□□□□ -1.53
VPS28-211ENST00000530790 SPRR2FQ96RM1 72 aa5.48□□□□□ -1.53
VPS28-211ENST00000530790 H7BZZ5 65 aa5.47□□□□□ -1.53
VPS28-211ENST00000530790 KRTAP12-2P59991 146 aa5.47□□□□□ -1.53
VPS28-211ENST00000530790 KRTAP8-1Q8IUC2 63 aa5.46□□□□□ -1.54
VPS28-211ENST00000530790 SPANXA2-OT1Q8N9U9 137 aa5.43□□□□□ -1.54
VPS28-211ENST00000530790 SPRR2EP22531 72 aa5.41□□□□□ -1.54
VPS28-211ENST00000530790 SPRR2BP35325 72 aa5.41□□□□□ -1.54
VPS28-211ENST00000530790 SPRR2AP35326 72 aa5.41□□□□□ -1.54
VPS28-211ENST00000530790 PCP4P48539 62 aa5.4□□□□□ -1.54
VPS28-211ENST00000530790 KRTAP4-8A0A0G2JLE6 195 aa5.34□□□□□ -1.55
VPS28-211ENST00000530790 KRTAP10-7P60409 375 aaPredicted RBP5.34□□□□□ -1.55
VPS28-211ENST00000530790 KRTAP4-8Q9BYQ9 185 aa5.34□□□□□ -1.55
VPS28-211ENST00000530790 KRTAP2-3P0C7H8 128 aa5.33□□□□□ -1.56
VPS28-211ENST00000530790 KRTAP2-4Q9BYR9 128 aa5.33□□□□□ -1.56
VPS28-211ENST00000530790 KRTAP10-12P60413 245 aa5.31□□□□□ -1.56
VPS28-211ENST00000530790 LCE1AQ5T7P2 110 aa5.31□□□□□ -1.56
VPS28-211ENST00000530790 TMEM258P61165 79 aa5.29□□□□□ -1.56
VPS28-211ENST00000530790 COA5Q86WW8 74 aa5.29□□□□□ -1.56
VPS28-211ENST00000530790 ATP5EP56381 51 aaPredicted RBP5.26□□□□□ -1.57
VPS28-211ENST00000530790 KRTAP13-4Q3LI77 160 aa5.26□□□□□ -1.57
VPS28-211ENST00000530790 SPRR2DP22532 72 aa5.24□□□□□ -1.57
VPS28-211ENST00000530790 CAMK2N1Q7Z7J9 78 aa5.23□□□□□ -1.57
VPS28-211ENST00000530790 SEC61GP60059 68 aa5.2□□□□□ -1.58
VPS28-211ENST00000530790 SERP1Q9Y6X1 66 aa5.18□□□□□ -1.58
VPS28-211ENST00000530790 KRTAP2-2Q9BYT5 123 aa5.16□□□□□ -1.58
VPS28-211ENST00000530790 KRTAP2-1Q9BYU5 128 aa5.16□□□□□ -1.58
VPS28-211ENST00000530790 A0A0D9SG42 100 aa5.12□□□□□ -1.59
VPS28-211ENST00000530790 SPATA8Q6RVD6 105 aa5.1□□□□□ -1.59
VPS28-211ENST00000530790 A0A1B0GU33 70 aa5.09□□□□□ -1.59
VPS28-211ENST00000530790 LCE3BQ5TA77 95 aa5.08□□□□□ -1.6
VPS28-211ENST00000530790 SPINT4Q6UDR6 99 aa5.06□□□□□ -1.6
VPS28-211ENST00000530790 RPS28P62857 69 aaKnown RBP5.02□□□□□ -1.61
VPS28-211ENST00000530790 A0A1B0GU69 56 aa5.01□□□□□ -1.61
VPS28-211ENST00000530790 KRTAP12-1P59990 96 aa5.01□□□□□ -1.61
VPS28-211ENST00000530790 LINC01558Q9Y6Z2 57 aa5.01□□□□□ -1.61
VPS28-211ENST00000530790 KRTAP19-7Q3SYF9 63 aa4.99□□□□□ -1.61
VPS28-211ENST00000530790 SMIM26A0A096LP01 95 aa4.97□□□□□ -1.61
VPS28-211ENST00000530790 MT1EP04732 61 aa4.96□□□□□ -1.62
VPS28-211ENST00000530790 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
VPS28-211ENST00000530790 KRTAP19-3Q7Z4W3 81 aa4.94□□□□□ -1.62
VPS28-211ENST00000530790 Q1T7F1 81 aa4.93□□□□□ -1.62
VPS28-211ENST00000530790 PRR15LQ9BU68 103 aa4.92□□□□□ -1.62
VPS28-211ENST00000530790 A8MU10 97 aa4.9□□□□□ -1.63
VPS28-211ENST00000530790 V9GYY9 64 aa4.89□□□□□ -1.63
VPS28-211ENST00000530790 PSPHP1O15172 72 aa4.88□□□□□ -1.63
VPS28-211ENST00000530790 KRTAP19-5Q3LI72 72 aa4.87□□□□□ -1.63
VPS28-211ENST00000530790 MT1GP13640 62 aa4.8□□□□□ -1.64
VPS28-211ENST00000530790 PP632Q6XCG6 107 aa4.8□□□□□ -1.64
VPS28-211ENST00000530790 TNP1P09430 55 aa4.79□□□□□ -1.64
VPS28-211ENST00000530790 DSTQ03001 7570 aaKnown RBP4.78□□□□□ -1.64
VPS28-211ENST00000530790 UQCR11O14957 56 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms