RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 CELSR1Q9NYQ6 3014 aa0.94□□□□□ -2.26
CTR9-204ENST00000529355 CRYBG3Q68DQ2 2970 aa0.94□□□□□ -2.26
CTR9-204ENST00000529355 VPS13DQ5THJ4 4388 aa0.94□□□□□ -2.26
CTR9-204ENST00000529355 MYO18BQ8IUG5 2567 aa0.94□□□□□ -2.26
CTR9-204ENST00000529355 LRBAP50851 2863 aa0.94□□□□□ -2.26
CTR9-204ENST00000529355 BDP1A6H8Y1 2624 aa0.93□□□□□ -2.26
CTR9-204ENST00000529355 KALRNO60229 2985 aa0.93□□□□□ -2.26
CTR9-204ENST00000529355 SMG1Q96Q15 3661 aaKnown RBP0.93□□□□□ -2.26
CTR9-204ENST00000529355 AKAP9Q99996 3911 aa0.93□□□□□ -2.26
CTR9-204ENST00000529355 ATRQ13535 2644 aa0.92□□□□□ -2.26
CTR9-204ENST00000529355 TGP01266 2768 aa0.92□□□□□ -2.26
CTR9-204ENST00000529355 DMXL2Q8TDJ6 3036 aa0.92□□□□□ -2.26
CTR9-204ENST00000529355 HRNRQ86YZ3 2850 aaPredicted RBP0.92□□□□□ -2.26
CTR9-204ENST00000529355 MYO9AB2RTY4 2548 aa0.91□□□□□ -2.26
CTR9-204ENST00000529355 CELSR3Q9NYQ7 3312 aa0.91□□□□□ -2.26
CTR9-204ENST00000529355 ITPR3Q14573 2671 aa0.91□□□□□ -2.26
CTR9-204ENST00000529355 SMR3AQ99954 134 aa0.91□□□□□ -2.26
CTR9-204ENST00000529355 CFAP47Q6ZTR5 3102 aa0.91□□□□□ -2.26
CTR9-204ENST00000529355 FASNP49327 2511 aaKnown RBP0.9□□□□□ -2.26
CTR9-204ENST00000529355 ASPMQ8IZT6 3477 aa0.9□□□□□ -2.26
CTR9-204ENST00000529355 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.27
CTR9-204ENST00000529355 BOD1L1Q8NFC6 3051 aa0.9□□□□□ -2.27
CTR9-204ENST00000529355 ZFYVE26Q68DK2 2539 aa0.9□□□□□ -2.27
CTR9-204ENST00000529355 CSMD1Q96PZ7 3565 aa0.9□□□□□ -2.27
CTR9-204ENST00000529355 FLNCQ14315 2725 aa0.9□□□□□ -2.27
CTR9-204ENST00000529355 TACC2O95359 2948 aa0.9□□□□□ -2.27
CTR9-204ENST00000529355 ACACBO00763 2458 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 NBPF19A0A087WUL8 3843 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 KRTAP2-3P0C7H8 128 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 KRTAP8-1Q8IUC2 63 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 KRTAP2-4Q9BYR9 128 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 KRTAP2-1Q9BYU5 128 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 LAMA5O15230 3695 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 TEX15Q9BXT5 2789 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 STAB2Q8WWQ8 2551 aa0.89□□□□□ -2.27
CTR9-204ENST00000529355 NF1P21359 2839 aa0.88□□□□□ -2.27
CTR9-204ENST00000529355 TEP1Q99973 2627 aaKnown RBP0.88□□□□□ -2.27
CTR9-204ENST00000529355 ATMQ13315 3056 aa0.88□□□□□ -2.27
CTR9-204ENST00000529355 LOC400499M0QZD8 3231 aa0.88□□□□□ -2.27
CTR9-204ENST00000529355 ANKRD11Q6UB99 2663 aaPredicted RBP0.88□□□□□ -2.27
CTR9-204ENST00000529355 STAB1Q9NY15 2570 aa0.88□□□□□ -2.27
CTR9-204ENST00000529355 COL7A1Q02388 2944 aa0.88□□□□□ -2.27
CTR9-204ENST00000529355 VPS13CQ709C8 3753 aa0.87□□□□□ -2.27
CTR9-204ENST00000529355 BSNQ9UPA5 3926 aa0.87□□□□□ -2.27
CTR9-204ENST00000529355 FBN2P35556 2912 aa0.87□□□□□ -2.27
CTR9-204ENST00000529355 NIPBLQ6KC79 2804 aaeCLIP0.87□□□□□ -2.27
CTR9-204ENST00000529355 KIAA1109Q2LD37 5005 aa0.86□□□□□ -2.27
CTR9-204ENST00000529355 DNAH11Q96DT5 4516 aa0.86□□□□□ -2.27
CTR9-204ENST00000529355 COL12A1Q99715 3063 aa0.86□□□□□ -2.27
CTR9-204ENST00000529355 DCHS1Q96JQ0 3298 aa0.86□□□□□ -2.27
CTR9-204ENST00000529355 GCN1Q92616 2671 aaKnown RBP0.85□□□□□ -2.27
CTR9-204ENST00000529355 MUC3AQ02505 3323 aa0.85□□□□□ -2.27
CTR9-204ENST00000529355 RELNP78509 3460 aa0.85□□□□□ -2.27
CTR9-204ENST00000529355 SVEP1Q4LDE5 3571 aa0.85□□□□□ -2.27
CTR9-204ENST00000529355 NBEAL1Q6ZS30 2694 aa0.84□□□□□ -2.27
CTR9-204ENST00000529355 MUC5BQ9HC84 5762 aaPredicted RBP0.84□□□□□ -2.28
CTR9-204ENST00000529355 ADGRG4Q8IZF6 3080 aa0.84□□□□□ -2.28
CTR9-204ENST00000529355 CUBNO60494 3623 aa0.84□□□□□ -2.28
CTR9-204ENST00000529355 TENM4Q6N022 2769 aa0.84□□□□□ -2.28
CTR9-204ENST00000529355 DNAH3Q8TD57 4116 aa0.83□□□□□ -2.28
CTR9-204ENST00000529355 FLNAP21333 2647 aaKnown RBP0.83□□□□□ -2.28
CTR9-204ENST00000529355 TENM3Q9P273 2699 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 ITPR2Q14571 2701 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 ZNF469Q96JG9 3925 aaPredicted RBP0.82□□□□□ -2.28
CTR9-204ENST00000529355 PDZD2O15018 2839 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 ZANQ9Y493 2812 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 DNAH7Q8WXX0 4024 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 CMYA5Q8N3K9 4069 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 ANK3Q12955 4377 aaKnown RBP0.82□□□□□ -2.28
CTR9-204ENST00000529355 IGSF10Q6WRI0 2623 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 CEP295Q9C0D2 2601 aa0.82□□□□□ -2.28
CTR9-204ENST00000529355 LYSTQ99698 3801 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 NBEAL2Q6ZNJ1 2754 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 MUC2Q02817 5179 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 VPS13BQ7Z7G8 4022 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 MACF1Q9UPN3 7388 aaKnown RBP0.81□□□□□ -2.28
CTR9-204ENST00000529355 HIVEP1P15822 2718 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 MXRA5Q9NR99 2828 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 SACSQ9NZJ4 4579 aa0.81□□□□□ -2.28
CTR9-204ENST00000529355 CSMD2Q7Z408 3487 aa0.8□□□□□ -2.28
CTR9-204ENST00000529355 NSD1Q96L73 2696 aaPredicted RBP0.8□□□□□ -2.28
CTR9-204ENST00000529355 PRKDCP78527 4128 aaKnown RBP0.79□□□□□ -2.28
CTR9-204ENST00000529355 PKD1L1Q8TDX9 2849 aa0.79□□□□□ -2.28
CTR9-204ENST00000529355 ANK2Q01484 3957 aa0.79□□□□□ -2.28
CTR9-204ENST00000529355 KMT2AQ03164 3969 aa0.79□□□□□ -2.28
CTR9-204ENST00000529355 FLGP20930 4061 aaPredicted RBP0.79□□□□□ -2.28
CTR9-204ENST00000529355 DYNC2H1Q8NCM8 4307 aaKnown RBP0.79□□□□□ -2.28
CTR9-204ENST00000529355 TRRAPQ9Y4A5 3859 aa0.79□□□□□ -2.28
CTR9-204ENST00000529355 MGAM2Q2M2H8 2515 aa0.79□□□□□ -2.28
CTR9-204ENST00000529355 CSMD3Q7Z407 3707 aa0.78□□□□□ -2.28
CTR9-204ENST00000529355 HECTD4Q9Y4D8 3996 aa0.78□□□□□ -2.29
CTR9-204ENST00000529355 FRAS1Q86XX4 4008 aa0.77□□□□□ -2.29
CTR9-204ENST00000529355 SMR3BP02814 79 aaPredicted RBP0.77□□□□□ -2.29
CTR9-204ENST00000529355 DNAH2Q9P225 4427 aa0.77□□□□□ -2.29
CTR9-204ENST00000529355 HSPG2P98160 4391 aa0.77□□□□□ -2.29
CTR9-204ENST00000529355 HUWE1Q7Z6Z7 4374 aaKnown RBP0.77□□□□□ -2.29
CTR9-204ENST00000529355 FLNBO75369 2602 aaKnown RBP0.76□□□□□ -2.29
CTR9-204ENST00000529355 DNAH6Q9C0G6 4158 aa0.76□□□□□ -2.29
CTR9-204ENST00000529355 DNAH8Q96JB1 4490 aa0.76□□□□□ -2.29
CTR9-204ENST00000529355 PKD1P98161 4303 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms