RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	ADM2	Q7Z4H4	148 aa		4.42	□□□□□ -1.7
CSTF3-208	ENST00000528865	PRAC1	Q96KF2	57 aa		4.42	□□□□□ -1.7
CSTF3-208	ENST00000528865		H0YAA0	97 aa		4.41	□□□□□ -1.7
CSTF3-208	ENST00000528865	H1FX-AS1	Q4G0G2	97 aa		4.41	□□□□□ -1.7
CSTF3-208	ENST00000528865	FAT3	Q8TDW7	4589 aa		4.4	□□□□□ -1.7
CSTF3-208	ENST00000528865		A0A1B0GU33	70 aa		4.4	□□□□□ -1.71
CSTF3-208	ENST00000528865	LCE2C	Q5TA81	110 aa		4.39	□□□□□ -1.71
CSTF3-208	ENST00000528865	TNXB	P22105	4242 aa		4.37	□□□□□ -1.71
CSTF3-208	ENST00000528865	RYR2	Q92736	4967 aa		4.37	□□□□□ -1.71
CSTF3-208	ENST00000528865	FLG2	Q5D862	2391 aa	Predicted RBP	4.36	□□□□□ -1.71
CSTF3-208	ENST00000528865	RPL37	P61927	97 aa	Known RBP	4.35	□□□□□ -1.71
CSTF3-208	ENST00000528865	HSPG2	P98160	4391 aa		4.34	□□□□□ -1.71
CSTF3-208	ENST00000528865	LCE3B	Q5TA77	95 aa		4.34	□□□□□ -1.71
CSTF3-208	ENST00000528865	LINC01554	Q52M75	96 aa		4.33	□□□□□ -1.72
CSTF3-208	ENST00000528865	CSAG1	Q6PB30	78 aa		4.32	□□□□□ -1.72
CSTF3-208	ENST00000528865	LRP1	Q07954	4544 aa	Known RBP	4.32	□□□□□ -1.72
CSTF3-208	ENST00000528865	KRTAP10-6	P60371	365 aa	Predicted RBP	4.3	□□□□□ -1.72
CSTF3-208	ENST00000528865	KRTAP4-8	A0A0G2JLE6	195 aa		4.29	□□□□□ -1.72
CSTF3-208	ENST00000528865	LOR	P23490	312 aa	Predicted RBP	4.29	□□□□□ -1.72
CSTF3-208	ENST00000528865		Q5VSD8	79 aa		4.28	□□□□□ -1.72
CSTF3-208	ENST00000528865	KRTAP9-9	Q9BYP9	154 aa		4.27	□□□□□ -1.73
CSTF3-208	ENST00000528865	KRTAP9-4	Q9BYQ2	154 aa		4.27	□□□□□ -1.73
CSTF3-208	ENST00000528865		K7ERS5	55 aa		4.25	□□□□□ -1.73
CSTF3-208	ENST00000528865	KRTAP25-1	Q3LHN0	102 aa		4.25	□□□□□ -1.73
CSTF3-208	ENST00000528865	RYR1	P21817	5038 aa		4.24	□□□□□ -1.73
CSTF3-208	ENST00000528865	MT1HL1	P0DM35	61 aa		4.23	□□□□□ -1.73
CSTF3-208	ENST00000528865	KRTAP17-1	Q9BYP8	105 aa		4.23	□□□□□ -1.73
CSTF3-208	ENST00000528865		S4R3F8	94 aa		4.23	□□□□□ -1.73
CSTF3-208	ENST00000528865	KRTAP13-4	Q3LI77	160 aa		4.21	□□□□□ -1.74
CSTF3-208	ENST00000528865	KRTAP4-12	Q9BQ66	201 aa		4.2	□□□□□ -1.74
CSTF3-208	ENST00000528865	ROMO1	P60602	79 aa		4.19	□□□□□ -1.74
CSTF3-208	ENST00000528865	KRTAP4-7	Q9BYR0	210 aa		4.18	□□□□□ -1.74
CSTF3-208	ENST00000528865	MYCBP2	O75592	4640 aa		4.18	□□□□□ -1.74
CSTF3-208	ENST00000528865	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.16	□□□□□ -1.74
CSTF3-208	ENST00000528865		P0C880	135 aa		4.15	□□□□□ -1.75
CSTF3-208	ENST00000528865	TPRXL	Q17RH7	258 aa		4.15	□□□□□ -1.75
CSTF3-208	ENST00000528865	KMT2C	Q8NEZ4	4911 aa	Known RBP	4.15	□□□□□ -1.75
CSTF3-208	ENST00000528865		A0A0D9SG42	100 aa		4.11	□□□□□ -1.75
CSTF3-208	ENST00000528865		M0QZ58	72 aa		4.1	□□□□□ -1.75
CSTF3-208	ENST00000528865	RYR3	Q15413	4870 aa		4.08	□□□□□ -1.76
CSTF3-208	ENST00000528865	KRTAP12-1	P59990	96 aa		4.07	□□□□□ -1.76
CSTF3-208	ENST00000528865	CRIPT	Q9P021	101 aa		4.07	□□□□□ -1.76
CSTF3-208	ENST00000528865	KRTAP12-2	P59991	146 aa		4.06	□□□□□ -1.76
CSTF3-208	ENST00000528865		A0A0A0MQY5	61 aa		4.05	□□□□□ -1.76
CSTF3-208	ENST00000528865	LCE1D	Q5T752	114 aa		4.05	□□□□□ -1.76
CSTF3-208	ENST00000528865	KIAA1109	Q2LD37	5005 aa		4.03	□□□□□ -1.76
CSTF3-208	ENST00000528865	LRP2	P98164	4655 aa		4	□□□□□ -1.77
CSTF3-208	ENST00000528865	KRTAP4-2	Q9BYR5	136 aa		4	□□□□□ -1.77
CSTF3-208	ENST00000528865	KRTAP23-1	A1A580	65 aa		3.99	□□□□□ -1.77
CSTF3-208	ENST00000528865	SEC61B	P60468	96 aa	Known RBP	3.99	□□□□□ -1.77
CSTF3-208	ENST00000528865	SPINT4	Q6UDR6	99 aa		3.99	□□□□□ -1.77
CSTF3-208	ENST00000528865	LPA	P08519	4548 aa		3.98	□□□□□ -1.77
CSTF3-208	ENST00000528865	MUC17	Q685J3	4493 aa		3.98	□□□□□ -1.77
CSTF3-208	ENST00000528865	KRTAP19-1	Q8IUB9	90 aa		3.98	□□□□□ -1.77
CSTF3-208	ENST00000528865	KRTAP4-9	Q9BYQ8	210 aa		3.97	□□□□□ -1.77
CSTF3-208	ENST00000528865	KRTAP4-5	Q9BYR2	181 aa		3.96	□□□□□ -1.78
CSTF3-208	ENST00000528865	C10orf95	Q9H7T3	257 aa		3.96	□□□□□ -1.78
CSTF3-208	ENST00000528865	KRTAP19-2	Q3LHN2	52 aa		3.92	□□□□□ -1.78
CSTF3-208	ENST00000528865	KRTAP4-1	Q9BYQ7	146 aa		3.92	□□□□□ -1.78
CSTF3-208	ENST00000528865	KRTAP15-1	Q3LI76	137 aa		3.91	□□□□□ -1.78
CSTF3-208	ENST00000528865		R4GN34	69 aa		3.9	□□□□□ -1.79
CSTF3-208	ENST00000528865	EPPK1	P58107	5090 aa	Known RBP	3.9	□□□□□ -1.79
CSTF3-208	ENST00000528865	KRTAP5-3	Q6L8H2	238 aa		3.89	□□□□□ -1.79
CSTF3-208	ENST00000528865	KRTAP9-8	Q9BYQ0	159 aa		3.84	□□□□□ -1.79
CSTF3-208	ENST00000528865	HERC1	Q15751	4861 aa		3.83	□□□□□ -1.8
CSTF3-208	ENST00000528865	ABCA13	Q86UQ4	5058 aa		3.82	□□□□□ -1.8
CSTF3-208	ENST00000528865	KRTAP4-11	Q9BYQ6	195 aa		3.77	□□□□□ -1.81
CSTF3-208	ENST00000528865	BIRC6	Q9NR09	4857 aa		3.76	□□□□□ -1.81
CSTF3-208	ENST00000528865	HERC2	O95714	4834 aa		3.76	□□□□□ -1.81
CSTF3-208	ENST00000528865	FLG	P20930	4061 aa	Predicted RBP	3.75	□□□□□ -1.81
CSTF3-208	ENST00000528865	PP632	Q6XCG6	107 aa		3.74	□□□□□ -1.81
CSTF3-208	ENST00000528865	NDUFAF8	A1L188	74 aa		3.71	□□□□□ -1.82
CSTF3-208	ENST00000528865	PLAC4	Q8WY50	150 aa		3.7	□□□□□ -1.82
CSTF3-208	ENST00000528865	CAMK2N1	Q7Z7J9	78 aa		3.69	□□□□□ -1.82
CSTF3-208	ENST00000528865	TNP1	P09430	55 aa		3.62	□□□□□ -1.83
CSTF3-208	ENST00000528865	SPRR2G	Q9BYE4	73 aa		3.61	□□□□□ -1.83
CSTF3-208	ENST00000528865	HMCN2	Q8NDA2	5059 aa		3.57	□□□□□ -1.84
CSTF3-208	ENST00000528865	KRTAP19-4	Q3LI73	84 aa		3.54	□□□□□ -1.84
CSTF3-208	ENST00000528865	SPRR5	A0A1B0GTR4	108 aa		3.52	□□□□□ -1.85
CSTF3-208	ENST00000528865	MT1H	P80294	61 aa		3.52	□□□□□ -1.85
CSTF3-208	ENST00000528865	PCLO	Q9Y6V0	5065 aa		3.51	□□□□□ -1.85
CSTF3-208	ENST00000528865	LUZP6	Q538Z0	58 aa		3.49	□□□□□ -1.85
CSTF3-208	ENST00000528865	MT2A	P02795	61 aa		3.48	□□□□□ -1.85
CSTF3-208	ENST00000528865	KRTAP19-8	Q3LI54	63 aa		3.48	□□□□□ -1.85
CSTF3-208	ENST00000528865	MT1F	P04733	61 aa		3.47	□□□□□ -1.85
CSTF3-208	ENST00000528865	MUC2	Q02817	5179 aa		3.45	□□□□□ -1.86
CSTF3-208	ENST00000528865		M0R2T5	61 aa		3.45	□□□□□ -1.86
CSTF3-208	ENST00000528865	KRTAP10-10	P60014	251 aa		3.42	□□□□□ -1.86
CSTF3-208	ENST00000528865	LCE4A	Q5TA78	99 aa		3.41	□□□□□ -1.86
CSTF3-208	ENST00000528865	LCE5A	Q5TCM9	118 aa		3.41	□□□□□ -1.86
CSTF3-208	ENST00000528865	LCE3A	Q5TA76	89 aa		3.4	□□□□□ -1.87
CSTF3-208	ENST00000528865	MT1B	P07438	61 aa		3.39	□□□□□ -1.87
CSTF3-208	ENST00000528865	KRTAP8-1	Q8IUC2	63 aa		3.39	□□□□□ -1.87
CSTF3-208	ENST00000528865	RNF213	Q63HN8	5207 aa		3.38	□□□□□ -1.87
CSTF3-208	ENST00000528865	FAT4	Q6V0I7	4981 aa		3.37	□□□□□ -1.87
CSTF3-208	ENST00000528865	KRTAP10-5	P60370	271 aa		3.36	□□□□□ -1.87
CSTF3-208	ENST00000528865	MT1X	P80297	61 aa		3.35	□□□□□ -1.87
CSTF3-208	ENST00000528865	KRTAP9-3	Q9BYQ3	159 aa		3.34	□□□□□ -1.87
CSTF3-208	ENST00000528865	UBR4	Q5T4S7	5183 aa		3.3	□□□□□ -1.88
CSTF3-208	ENST00000528865	KRTAP10-12	P60413	245 aa		3.26	□□□□□ -1.89

Retrieved 100 of 20,778 RNA–protein pairs in 113 ms