RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 LCE2BO14633 110 aa2.14□□□□□ -2.07
CHMP4A-202ENST00000524955 SERP2Q8N6R1 65 aa2.14□□□□□ -2.07
CHMP4A-202ENST00000524955 KRTAP9-3Q9BYQ3 159 aa2.14□□□□□ -2.07
CHMP4A-202ENST00000524955 NDUFC1O43677 76 aa2.13□□□□□ -2.07
CHMP4A-202ENST00000524955 DMAC1Q96GE9 116 aa2.12□□□□□ -2.07
CHMP4A-202ENST00000524955 CYSTM1Q9H1C7 97 aa2.12□□□□□ -2.07
CHMP4A-202ENST00000524955 CRCT1Q9UGL9 99 aa2.12□□□□□ -2.07
CHMP4A-202ENST00000524955 FSIP2Q5CZC0 6907 aa2.12□□□□□ -2.07
CHMP4A-202ENST00000524955 KRTAP9-6A0A140TA67 174 aa2.11□□□□□ -2.07
CHMP4A-202ENST00000524955 A8MUN3 132 aa2.11□□□□□ -2.07
CHMP4A-202ENST00000524955 COX7CP15954 63 aa2.11□□□□□ -2.07
CHMP4A-202ENST00000524955 ADM2Q7Z4H4 148 aa2.1□□□□□ -2.07
CHMP4A-202ENST00000524955 ANAPC13Q9BS18 74 aa2.1□□□□□ -2.07
CHMP4A-202ENST00000524955 CCDC179H3BU77 68 aa2.09□□□□□ -2.07
CHMP4A-202ENST00000524955 ACYP2P14621 99 aa2.09□□□□□ -2.07
CHMP4A-202ENST00000524955 KRTAP19-1Q8IUB9 90 aa2.09□□□□□ -2.07
CHMP4A-202ENST00000524955 CHKB-CPT1BH3BT56 60 aa2.08□□□□□ -2.08
CHMP4A-202ENST00000524955 P0C880 135 aa2.07□□□□□ -2.08
CHMP4A-202ENST00000524955 H7BZZ5 65 aa2.06□□□□□ -2.08
CHMP4A-202ENST00000524955 USH2AO75445 5202 aa2.06□□□□□ -2.08
CHMP4A-202ENST00000524955 COA5Q86WW8 74 aa2.05□□□□□ -2.08
CHMP4A-202ENST00000524955 SPANXA2-OT1Q8N9U9 137 aa2.05□□□□□ -2.08
CHMP4A-202ENST00000524955 KRTAP3-2Q9BYR7 98 aa2.05□□□□□ -2.08
CHMP4A-202ENST00000524955 H0YAA0 97 aa2.04□□□□□ -2.08
CHMP4A-202ENST00000524955 MT1BP07438 61 aa2.04□□□□□ -2.08
CHMP4A-202ENST00000524955 SPRR2GQ9BYE4 73 aa2.04□□□□□ -2.08
CHMP4A-202ENST00000524955 M0QZ58 72 aa2.02□□□□□ -2.09
CHMP4A-202ENST00000524955 KRTAP19-8Q3LI54 63 aa2.02□□□□□ -2.09
CHMP4A-202ENST00000524955 LINC01554Q52M75 96 aa2.02□□□□□ -2.09
CHMP4A-202ENST00000524955 Q5VV11 94 aa2.02□□□□□ -2.09
CHMP4A-202ENST00000524955 SPTSSBQ8NFR3 76 aa2.02□□□□□ -2.09
CHMP4A-202ENST00000524955 KRTAP19-6Q3LI70 58 aa2.01□□□□□ -2.09
CHMP4A-202ENST00000524955 R4GN34 69 aa2.01□□□□□ -2.09
CHMP4A-202ENST00000524955 SSPOA2VEC9 5147 aa2.01□□□□□ -2.09
CHMP4A-202ENST00000524955 CRIPTQ9P021 101 aa2□□□□□ -2.09
CHMP4A-202ENST00000524955 FCGBPQ9Y6R7 5405 aaPredicted RBP1.99□□□□□ -2.09
CHMP4A-202ENST00000524955 KRTAP13-4Q3LI77 160 aa1.98□□□□□ -2.09
CHMP4A-202ENST00000524955 A6NN06 94 aa1.97□□□□□ -2.09
CHMP4A-202ENST00000524955 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.97□□□□□ -2.09
CHMP4A-202ENST00000524955 SPATA8Q6RVD6 105 aa1.96□□□□□ -2.1
CHMP4A-202ENST00000524955 A0A0D9SG42 100 aa1.95□□□□□ -2.1
CHMP4A-202ENST00000524955 KRTAP10-5P60370 271 aa1.95□□□□□ -2.1
CHMP4A-202ENST00000524955 PLAC4Q8WY50 150 aa1.95□□□□□ -2.1
CHMP4A-202ENST00000524955 SERP1Q9Y6X1 66 aa1.95□□□□□ -2.1
CHMP4A-202ENST00000524955 SEC61GP60059 68 aa1.94□□□□□ -2.1
CHMP4A-202ENST00000524955 TMEM258P61165 79 aa1.94□□□□□ -2.1
CHMP4A-202ENST00000524955 A0A1B0GU69 56 aa1.93□□□□□ -2.1
CHMP4A-202ENST00000524955 PCP4P48539 62 aa1.93□□□□□ -2.1
CHMP4A-202ENST00000524955 ATP5EP56381 51 aaPredicted RBP1.93□□□□□ -2.1
CHMP4A-202ENST00000524955 MT1XP80297 61 aa1.93□□□□□ -2.1
CHMP4A-202ENST00000524955 A0A1B0GU33 70 aa1.92□□□□□ -2.1
CHMP4A-202ENST00000524955 KRTAP9-7A8MTY7 169 aa1.92□□□□□ -2.1
CHMP4A-202ENST00000524955 A8MU10 97 aa1.91□□□□□ -2.1
CHMP4A-202ENST00000524955 SPINT4Q6UDR6 99 aa1.9□□□□□ -2.11
CHMP4A-202ENST00000524955 MACF1Q9UPN3 7388 aaKnown RBP1.89□□□□□ -2.11
CHMP4A-202ENST00000524955 LINC01558Q9Y6Z2 57 aa1.89□□□□□ -2.11
CHMP4A-202ENST00000524955 KRTAP10-7P60409 375 aaPredicted RBP1.88□□□□□ -2.11
CHMP4A-202ENST00000524955 CAMK2N1Q7Z7J9 78 aa1.88□□□□□ -2.11
CHMP4A-202ENST00000524955 PRR15LQ9BU68 103 aa1.88□□□□□ -2.11
CHMP4A-202ENST00000524955 PRO2289Q9P1D8 64 aa1.88□□□□□ -2.11
CHMP4A-202ENST00000524955 KRTAP12-1P59990 96 aa1.87□□□□□ -2.11
CHMP4A-202ENST00000524955 KRTAP12-2P59991 146 aa1.87□□□□□ -2.11
CHMP4A-202ENST00000524955 SYNE2Q8WXH0 6885 aaKnown RBP1.86□□□□□ -2.11
CHMP4A-202ENST00000524955 KRTAP4-8A0A0G2JLE6 195 aa1.86□□□□□ -2.11
CHMP4A-202ENST00000524955 PSPHP1O15172 72 aa1.86□□□□□ -2.11
CHMP4A-202ENST00000524955 KRTAP4-8Q9BYQ9 185 aa1.86□□□□□ -2.11
CHMP4A-202ENST00000524955 SMIM26A0A096LP01 95 aa1.85□□□□□ -2.11
CHMP4A-202ENST00000524955 KRTAP6-3Q3LI67 103 aa1.84□□□□□ -2.11
CHMP4A-202ENST00000524955 UQCR11O14957 56 aa1.82□□□□□ -2.12
CHMP4A-202ENST00000524955 Q1T7F1 81 aa1.82□□□□□ -2.12
CHMP4A-202ENST00000524955 KRTAP10-12P60413 245 aa1.81□□□□□ -2.12
CHMP4A-202ENST00000524955 MIR22HGQ0VDD5 57 aa1.81□□□□□ -2.12
CHMP4A-202ENST00000524955 KRTAP8-1Q8IUC2 63 aa1.81□□□□□ -2.12
CHMP4A-202ENST00000524955 KMT2DO14686 5537 aa1.8□□□□□ -2.12
CHMP4A-202ENST00000524955 SPRR2FQ96RM1 72 aa1.8□□□□□ -2.12
CHMP4A-202ENST00000524955 V9GYY9 64 aa1.8□□□□□ -2.12
CHMP4A-202ENST00000524955 C10orf95Q9H7T3 257 aa1.79□□□□□ -2.12
CHMP4A-202ENST00000524955 A6NED7 52 aa1.78□□□□□ -2.12
CHMP4A-202ENST00000524955 KRTAP5-9P26371 169 aa1.78□□□□□ -2.12
CHMP4A-202ENST00000524955 RPS28P62857 69 aaKnown RBP1.78□□□□□ -2.12
CHMP4A-202ENST00000524955 SPRR2EP22531 72 aa1.76□□□□□ -2.13
CHMP4A-202ENST00000524955 SPRR2BP35325 72 aa1.76□□□□□ -2.13
CHMP4A-202ENST00000524955 SPRR2AP35326 72 aa1.76□□□□□ -2.13
CHMP4A-202ENST00000524955 LCE3AQ5TA76 89 aa1.74□□□□□ -2.13
CHMP4A-202ENST00000524955 TNP1P09430 55 aa1.73□□□□□ -2.13
CHMP4A-202ENST00000524955 LCE1AQ5T7P2 110 aa1.73□□□□□ -2.13
CHMP4A-202ENST00000524955 NEBP20929 6669 aa1.72□□□□□ -2.13
CHMP4A-202ENST00000524955 MUC12Q9UKN1 5478 aa1.72□□□□□ -2.13
CHMP4A-202ENST00000524955 K7ERS5 55 aa1.72□□□□□ -2.13
CHMP4A-202ENST00000524955 KRTAP19-5Q3LI72 72 aa1.72□□□□□ -2.13
CHMP4A-202ENST00000524955 KRTAP19-7Q3SYF9 63 aa1.72□□□□□ -2.13
CHMP4A-202ENST00000524955 MDN1Q9NU22 5596 aa1.71□□□□□ -2.14
CHMP4A-202ENST00000524955 MT1EP04732 61 aa1.7□□□□□ -2.14
CHMP4A-202ENST00000524955 SPRR2DP22532 72 aa1.7□□□□□ -2.14
CHMP4A-202ENST00000524955 KRTAP20-1Q3LI63 56 aa1.69□□□□□ -2.14
CHMP4A-202ENST00000524955 CDC42SE1Q9NRR8 79 aa1.69□□□□□ -2.14
CHMP4A-202ENST00000524955 KRTAP25-1Q3LHN0 102 aa1.66□□□□□ -2.14
CHMP4A-202ENST00000524955 KRTAP19-3Q7Z4W3 81 aa1.66□□□□□ -2.14
CHMP4A-202ENST00000524955 KRTAP2-3P0C7H8 128 aa1.65□□□□□ -2.15
CHMP4A-202ENST00000524955 ROMO1P60602 79 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms