RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 C8orf17Q9NRJ1 99 aa3.45□□□□□ -1.86
SDCBP-208ENST00000520228 MT1HP80294 61 aa3.44□□□□□ -1.86
SDCBP-208ENST00000520228 CRCT1Q9UGL9 99 aa3.44□□□□□ -1.86
SDCBP-208ENST00000520228 BPY2O14599 106 aa3.43□□□□□ -1.86
SDCBP-208ENST00000520228 F8W1H4 67 aa3.42□□□□□ -1.86
SDCBP-208ENST00000520228 LCE1CQ5T751 118 aa3.42□□□□□ -1.86
SDCBP-208ENST00000520228 LCE1BQ5T7P3 118 aa3.42□□□□□ -1.86
SDCBP-208ENST00000520228 ZCCHC13Q8WW36 166 aaKnown RBP3.42□□□□□ -1.86
SDCBP-208ENST00000520228 K7EQZ3 153 aa3.41□□□□□ -1.86
SDCBP-208ENST00000520228 M0R2T5 61 aa3.41□□□□□ -1.86
SDCBP-208ENST00000520228 MMP24-AS1A0A0U1RRL7 71 aa3.4□□□□□ -1.87
SDCBP-208ENST00000520228 UBL5Q9BZL1 73 aa3.4□□□□□ -1.87
SDCBP-208ENST00000520228 LINC00846Q9NV44 126 aa3.4□□□□□ -1.87
SDCBP-208ENST00000520228 hDV103S1A0JD37 113 aa3.39□□□□□ -1.87
SDCBP-208ENST00000520228 ETDBQ3ZM63 59 aa3.39□□□□□ -1.87
SDCBP-208ENST00000520228 TMEM254Q8TBM7 123 aa3.39□□□□□ -1.87
SDCBP-208ENST00000520228 MRPL34Q9BQ48 92 aaKnown RBP3.39□□□□□ -1.87
SDCBP-208ENST00000520228 SPINK7P58062 85 aa3.38□□□□□ -1.87
SDCBP-208ENST00000520228 RBM12B-AS1Q9P1G2 102 aa3.38□□□□□ -1.87
SDCBP-208ENST00000520228 FAM236DA0A1B0GTK5 79 aa3.37□□□□□ -1.87
SDCBP-208ENST00000520228 NDUFS5O43920 106 aa3.37□□□□□ -1.87
SDCBP-208ENST00000520228 FAM236CP0DP71 79 aa3.37□□□□□ -1.87
SDCBP-208ENST00000520228 HRES1P13985 223 aa3.37□□□□□ -1.87
SDCBP-208ENST00000520228 CASC2Q6XLA1 102 aa3.36□□□□□ -1.87
SDCBP-208ENST00000520228 WFDC13Q8IUB5 93 aa3.36□□□□□ -1.87
SDCBP-208ENST00000520228 K7ERU9 68 aa3.34□□□□□ -1.87
SDCBP-208ENST00000520228 FLGP20930 4061 aaPredicted RBP3.33□□□□□ -1.88
SDCBP-208ENST00000520228 HCG22E2RYF7 251 aa3.33□□□□□ -1.88
SDCBP-208ENST00000520228 ACYP1P07311 99 aa3.32□□□□□ -1.88
SDCBP-208ENST00000520228 KRTAP5-2Q701N4 177 aa3.32□□□□□ -1.88
SDCBP-208ENST00000520228 FAM240AA0A1B0GVK7 77 aa3.3□□□□□ -1.88
SDCBP-208ENST00000520228 J3QR89 54 aa3.29□□□□□ -1.88
SDCBP-208ENST00000520228 C7orf65Q6ZTY9 151 aa3.29□□□□□ -1.88
SDCBP-208ENST00000520228 ATP5EP2Q5VTU8 51 aa3.27□□□□□ -1.89
SDCBP-208ENST00000520228 TP53AIP1Q9HCN2 124 aa3.27□□□□□ -1.89
SDCBP-208ENST00000520228 SPANXA2-OT1Q8N9U9 137 aa3.26□□□□□ -1.89
SDCBP-208ENST00000520228 HIST1H4AP62805 103 aaKnown RBP3.25□□□□□ -1.89
SDCBP-208ENST00000520228 H1FX-AS1Q4G0G2 97 aa3.25□□□□□ -1.89
SDCBP-208ENST00000520228 C4orf26Q17RF5 130 aa3.24□□□□□ -1.89
SDCBP-208ENST00000520228 LINC00643Q86TS7 51 aa3.24□□□□□ -1.89
SDCBP-208ENST00000520228 SMIM26A0A096LP01 95 aa3.23□□□□□ -1.89
SDCBP-208ENST00000520228 MT2AP02795 61 aa3.23□□□□□ -1.89
SDCBP-208ENST00000520228 SCGB1A1P11684 91 aa3.22□□□□□ -1.89
SDCBP-208ENST00000520228 MT1FP04733 61 aa3.21□□□□□ -1.9
SDCBP-208ENST00000520228 A0A087WVE0 104 aa3.2□□□□□ -1.9
SDCBP-208ENST00000520228 TRAV22A0A0B4J277 110 aa3.2□□□□□ -1.9
SDCBP-208ENST00000520228 UQCRQO14949 82 aa3.19□□□□□ -1.9
SDCBP-208ENST00000520228 C1orf64Q8NEQ6 169 aa3.19□□□□□ -1.9
SDCBP-208ENST00000520228 CYP4F30PQ9H0H9 118 aa3.19□□□□□ -1.9
SDCBP-208ENST00000520228 LOC101927531A0A1B0GV80 90 aa3.18□□□□□ -1.9
SDCBP-208ENST00000520228 ATOX1O00244 68 aa3.17□□□□□ -1.9
SDCBP-208ENST00000520228 H0Y9P7 68 aa3.16□□□□□ -1.9
SDCBP-208ENST00000520228 MT-ATP8P03928 68 aa3.15□□□□□ -1.91
SDCBP-208ENST00000520228 S4R3F8 94 aa3.15□□□□□ -1.91
SDCBP-208ENST00000520228 MP68P56378 58 aa3.13□□□□□ -1.91
SDCBP-208ENST00000520228 CSAG1Q6PB30 78 aa3.13□□□□□ -1.91
SDCBP-208ENST00000520228 LINC00208Q96KT6 92 aa3.13□□□□□ -1.91
SDCBP-208ENST00000520228 USH2AO75445 5202 aa3.13□□□□□ -1.91
SDCBP-208ENST00000520228 SPINT4Q6UDR6 99 aa3.12□□□□□ -1.91
SDCBP-208ENST00000520228 LCA10Q71F78 164 aa3.12□□□□□ -1.91
SDCBP-208ENST00000520228 IMUPQ9GZP8 106 aa3.11□□□□□ -1.91
SDCBP-208ENST00000520228 FAM236AA0A1B0GUQ0 79 aa3.09□□□□□ -1.91
SDCBP-208ENST00000520228 FAM236BA0A1B0GV22 79 aa3.09□□□□□ -1.91
SDCBP-208ENST00000520228 KLKP1Q107X0 134 aa3.09□□□□□ -1.91
SDCBP-208ENST00000520228 H3BPC8 53 aa3.08□□□□□ -1.92
SDCBP-208ENST00000520228 A8MUN3 132 aa3.07□□□□□ -1.92
SDCBP-208ENST00000520228 ANAPC13Q9BS18 74 aa3.07□□□□□ -1.92
SDCBP-208ENST00000520228 SYNE2Q8WXH0 6885 aaKnown RBP3.07□□□□□ -1.92
SDCBP-208ENST00000520228 SSPOA2VEC9 5147 aa3.06□□□□□ -1.92
SDCBP-208ENST00000520228 NDUFC1O43677 76 aa3.06□□□□□ -1.92
SDCBP-208ENST00000520228 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
SDCBP-208ENST00000520228 FCGBPQ9Y6R7 5405 aaPredicted RBP3.05□□□□□ -1.92
SDCBP-208ENST00000520228 SMIM20Q8N5G0 67 aa3.04□□□□□ -1.92
SDCBP-208ENST00000520228 TRAV7A0A075B6U4 112 aa3.03□□□□□ -1.92
SDCBP-208ENST00000520228 PSPHP1O15172 72 aa3.03□□□□□ -1.92
SDCBP-208ENST00000520228 KRTAP19-6Q3LI70 58 aa3.01□□□□□ -1.93
SDCBP-208ENST00000520228 DMAC1Q96GE9 116 aa3.01□□□□□ -1.93
SDCBP-208ENST00000520228 H0YAA0 97 aa3□□□□□ -1.93
SDCBP-208ENST00000520228 CCDC179H3BU77 68 aa3□□□□□ -1.93
SDCBP-208ENST00000520228 SPRR2GQ9BYE4 73 aa3□□□□□ -1.93
SDCBP-208ENST00000520228 P0C880 135 aa2.99□□□□□ -1.93
SDCBP-208ENST00000520228 CRIPTQ9P021 101 aa2.99□□□□□ -1.93
SDCBP-208ENST00000520228 MACF1Q9UPN3 7388 aaKnown RBP2.99□□□□□ -1.93
SDCBP-208ENST00000520228 COX7CP15954 63 aa2.98□□□□□ -1.93
SDCBP-208ENST00000520228 Q5VV11 94 aa2.98□□□□□ -1.93
SDCBP-208ENST00000520228 ADM2Q7Z4H4 148 aa2.98□□□□□ -1.93
SDCBP-208ENST00000520228 SERP2Q8N6R1 65 aa2.98□□□□□ -1.93
SDCBP-208ENST00000520228 KRTAP19-8Q3LI54 63 aa2.97□□□□□ -1.93
SDCBP-208ENST00000520228 ACYP2P14621 99 aa2.96□□□□□ -1.94
SDCBP-208ENST00000520228 SNURFQ9Y675 71 aa2.96□□□□□ -1.94
SDCBP-208ENST00000520228 MT1BP07438 61 aa2.95□□□□□ -1.94
SDCBP-208ENST00000520228 C20orf197Q8N268 126 aa2.94□□□□□ -1.94
SDCBP-208ENST00000520228 TMEM258P61165 79 aa2.92□□□□□ -1.94
SDCBP-208ENST00000520228 SPTSSBQ8NFR3 76 aa2.92□□□□□ -1.94
SDCBP-208ENST00000520228 A6NN06 94 aa2.91□□□□□ -1.94
SDCBP-208ENST00000520228 CHKB-CPT1BH3BT56 60 aa2.91□□□□□ -1.94
SDCBP-208ENST00000520228 KRTAP6-3Q3LI67 103 aa2.9□□□□□ -1.95
SDCBP-208ENST00000520228 R4GN34 69 aa2.9□□□□□ -1.95
SDCBP-208ENST00000520228 RPS28P62857 69 aaKnown RBP2.89□□□□□ -1.95
SDCBP-208ENST00000520228 KRTAP5-7Q6L8G8 165 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms