RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 LINC01590Q5TEZ4 76 aa1.82□□□□□ -2.12
CPNE3-201ENST00000517354 FAT4Q6V0I7 4981 aa1.82□□□□□ -2.12
CPNE3-201ENST00000517354 PKHD1L1Q86WI1 4243 aa1.82□□□□□ -2.12
CPNE3-201ENST00000517354 LRP2P98164 4655 aa1.82□□□□□ -2.12
CPNE3-201ENST00000517354 NREPQ16612 68 aa1.81□□□□□ -2.12
CPNE3-201ENST00000517354 FXYD6Q9H0Q3 95 aa1.81□□□□□ -2.12
CPNE3-201ENST00000517354 FSIP2Q5CZC0 6907 aa1.8□□□□□ -2.12
CPNE3-201ENST00000517354 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.8□□□□□ -2.12
CPNE3-201ENST00000517354 CMC2Q9NRP2 79 aa1.8□□□□□ -2.12
CPNE3-201ENST00000517354 MUC2Q02817 5179 aa1.8□□□□□ -2.12
CPNE3-201ENST00000517354 GVQW2A0A096LPI5 108 aaPredicted RBP1.79□□□□□ -2.12
CPNE3-201ENST00000517354 LINC01549A6NIU2 74 aa1.79□□□□□ -2.12
CPNE3-201ENST00000517354 Q6ZRX8 168 aa1.79□□□□□ -2.12
CPNE3-201ENST00000517354 LRP1Q07954 4544 aaKnown RBP1.78□□□□□ -2.12
CPNE3-201ENST00000517354 LINC00959A0A1B0GUT2 108 aa1.78□□□□□ -2.12
CPNE3-201ENST00000517354 NDUFA4O00483 81 aa1.78□□□□□ -2.12
CPNE3-201ENST00000517354 HTN3P15516 51 aa1.78□□□□□ -2.12
CPNE3-201ENST00000517354 KLK9Q2XQG4 91 aa1.78□□□□□ -2.12
CPNE3-201ENST00000517354 SMIM11BQ8TCY0 68 aa1.78□□□□□ -2.12
CPNE3-201ENST00000517354 TRBV6-1A0A0K0K1D8 114 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 A0A1B0GU69 56 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 PRH1P02810 166 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 APELAP0DMC3 54 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 DEFB131AP59861 70 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 HAMPP81172 84 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 LELP1Q5T871 98 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 PLAC4Q8WY50 150 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 ABRACLQ9P1F3 81 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 TNXBP22105 4242 aa1.77□□□□□ -2.13
CPNE3-201ENST00000517354 FAT3Q8TDW7 4589 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 NDUFB1O75438 58 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 MT1HL1P0DM35 61 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 SNRPGP62308 76 aaKnown RBP1.76□□□□□ -2.13
CPNE3-201ENST00000517354 PIGYQ3MUY2 71 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 RPL39P5Q59GN2 51 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 RHPN1-AS1Q9BWJ2 59 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 KRTAP4-1Q9BYQ7 146 aa1.76□□□□□ -2.13
CPNE3-201ENST00000517354 H3BNG1 76 aa1.75□□□□□ -2.13
CPNE3-201ENST00000517354 HMCN1Q96RW7 5635 aa1.74□□□□□ -2.13
CPNE3-201ENST00000517354 SNRPGP15A8MWD9 76 aa1.74□□□□□ -2.13
CPNE3-201ENST00000517354 TTTY10Q9BZA0 68 aa1.74□□□□□ -2.13
CPNE3-201ENST00000517354 ENHOQ6UWT2 76 aa1.73□□□□□ -2.13
CPNE3-201ENST00000517354 TMEM167AQ8TBQ9 72 aa1.73□□□□□ -2.13
CPNE3-201ENST00000517354 DEFB130BP0DP73 79 aa1.72□□□□□ -2.13
CPNE3-201ENST00000517354 DEFB130AP0DP74 79 aa1.72□□□□□ -2.13
CPNE3-201ENST00000517354 RPL37P61927 97 aaKnown RBP1.72□□□□□ -2.13
CPNE3-201ENST00000517354 SPINK13Q1W4C9 94 aa1.72□□□□□ -2.13
CPNE3-201ENST00000517354 SSBP3-AS1Q7Z2R9 100 aa1.72□□□□□ -2.13
CPNE3-201ENST00000517354 K7EMI3 77 aa1.71□□□□□ -2.14
CPNE3-201ENST00000517354 TIMM8BQ9Y5J9 83 aaPredicted RBP1.71□□□□□ -2.14
CPNE3-201ENST00000517354 DNAH8Q96JB1 4490 aa1.7□□□□□ -2.14
CPNE3-201ENST00000517354 COX7BP24311 80 aa1.7□□□□□ -2.14
CPNE3-201ENST00000517354 A0A096LPF7 62 aa1.69□□□□□ -2.14
CPNE3-201ENST00000517354 K7EIM0 57 aa1.69□□□□□ -2.14
CPNE3-201ENST00000517354 FCER1GP30273 86 aa1.69□□□□□ -2.14
CPNE3-201ENST00000517354 I3L2K1 104 aa1.68□□□□□ -2.14
CPNE3-201ENST00000517354 WT1-ASQ06250 92 aa1.68□□□□□ -2.14
CPNE3-201ENST00000517354 A8MTW9 85 aa1.67□□□□□ -2.14
CPNE3-201ENST00000517354 PRCDQ00LT1 54 aa1.67□□□□□ -2.14
CPNE3-201ENST00000517354 NOP10Q9NPE3 64 aaKnown RBP1.67□□□□□ -2.14
CPNE3-201ENST00000517354 LPAP08519 4548 aa1.67□□□□□ -2.14
CPNE3-201ENST00000517354 HTN1P15515 57 aa1.66□□□□□ -2.14
CPNE3-201ENST00000517354 LINC01556Q5JQF7 62 aa1.66□□□□□ -2.14
CPNE3-201ENST00000517354 UBL5Q9BZL1 73 aa1.66□□□□□ -2.14
CPNE3-201ENST00000517354 PRO0255Q9UI72 69 aa1.66□□□□□ -2.14
CPNE3-201ENST00000517354 SPINK9Q5DT21 86 aa1.65□□□□□ -2.15
CPNE3-201ENST00000517354 SPINK6Q6UWN8 80 aa1.65□□□□□ -2.15
CPNE3-201ENST00000517354 WFDC10BQ8IUB3 73 aa1.65□□□□□ -2.15
CPNE3-201ENST00000517354 ARHGAP5-AS1Q96IT6 56 aa1.64□□□□□ -2.15
CPNE3-201ENST00000517354 DEFB1P60022 68 aa1.63□□□□□ -2.15
CPNE3-201ENST00000517354 SPINK4O60575 86 aa1.62□□□□□ -2.15
CPNE3-201ENST00000517354 TOMM5Q8N4H5 51 aa1.61□□□□□ -2.15
CPNE3-201ENST00000517354 CRIPTQ9P021 101 aa1.61□□□□□ -2.15
CPNE3-201ENST00000517354 KCNQ1DNQ9H478 68 aa1.59□□□□□ -2.15
CPNE3-201ENST00000517354 SSPOA2VEC9 5147 aa1.57□□□□□ -2.16
CPNE3-201ENST00000517354 SYNE2Q8WXH0 6885 aaKnown RBP1.56□□□□□ -2.16
CPNE3-201ENST00000517354 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
CPNE3-201ENST00000517354 FCGBPQ9Y6R7 5405 aaPredicted RBP1.56□□□□□ -2.16
CPNE3-201ENST00000517354 ETDCA0A1B0GVM5 59 aa1.56□□□□□ -2.16
CPNE3-201ENST00000517354 NMES1Q9C002 83 aa1.56□□□□□ -2.16
CPNE3-201ENST00000517354 IGIPA6NJ69 53 aa1.55□□□□□ -2.16
CPNE3-201ENST00000517354 I3L3M4 83 aa1.55□□□□□ -2.16
CPNE3-201ENST00000517354 COX6A2Q02221 97 aa1.54□□□□□ -2.16
CPNE3-201ENST00000517354 TP53AIP1Q9HCN2 124 aa1.54□□□□□ -2.16
CPNE3-201ENST00000517354 USH2AO75445 5202 aa1.53□□□□□ -2.17
CPNE3-201ENST00000517354 MUC17Q685J3 4493 aa1.52□□□□□ -2.17
CPNE3-201ENST00000517354 K7EQZ3 153 aa1.52□□□□□ -2.17
CPNE3-201ENST00000517354 PLNP26678 52 aa1.52□□□□□ -2.17
CPNE3-201ENST00000517354 C10orf95Q9H7T3 257 aa1.52□□□□□ -2.17
CPNE3-201ENST00000517354 A0A0D9SG42 100 aa1.51□□□□□ -2.17
CPNE3-201ENST00000517354 M0R2T5 61 aa1.51□□□□□ -2.17
CPNE3-201ENST00000517354 CRIP1P50238 77 aa1.51□□□□□ -2.17
CPNE3-201ENST00000517354 MT1HP80294 61 aa1.51□□□□□ -2.17
CPNE3-201ENST00000517354 A0A096LNI7 61 aa1.5□□□□□ -2.17
CPNE3-201ENST00000517354 SERF2P84101 59 aa1.5□□□□□ -2.17
CPNE3-201ENST00000517354 MRPL34Q9BQ48 92 aaKnown RBP1.5□□□□□ -2.17
CPNE3-201ENST00000517354 SMIM27A0A1W2PRY6 76 aa1.49□□□□□ -2.17
CPNE3-201ENST00000517354 NEBP20929 6669 aa1.48□□□□□ -2.17
CPNE3-201ENST00000517354 KRTAP20-1Q3LI63 56 aa1.48□□□□□ -2.17
CPNE3-201ENST00000517354 KRTAP19-2Q3LHN2 52 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms