RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 AEBP2Q6ZN18 517 aaPredicted RBP28.57■■■□□ 2.16
CPNE3-201ENST00000517354 CHIC1Q5VXU3 224 aa28.18■■■□□ 2.1
CPNE3-201ENST00000517354 PHF23Q9BUL5 403 aaPredicted RBP24.75■■□□□ 1.55
CPNE3-201ENST00000517354 SENP3Q9H4L4 574 aaPredicted RBP24.34■■□□□ 1.49
CPNE3-201ENST00000517354 PLPPR3Q6T4P5 718 aa23.06■■□□□ 1.28
CPNE3-201ENST00000517354 FOXD1Q16676 465 aa22.49■■□□□ 1.19
CPNE3-201ENST00000517354 ADRA2BP18089 450 aa21.84■■□□□ 1.09
CPNE3-201ENST00000517354 PPP6R1Q9UPN7 881 aa21.79■■□□□ 1.08
CPNE3-201ENST00000517354 PIAS4Q8N2W9 510 aaPredicted RBP21.34■■□□□ 1.01
CPNE3-201ENST00000517354 MSH5O43196 834 aa20.75■□□□□ 0.91
CPNE3-201ENST00000517354 PPP4R3CPQ6ZMV5 832 aa20.33■□□□□ 0.85
CPNE3-201ENST00000517354 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
CPNE3-201ENST00000517354 KCNA4P22459 653 aa20.05■□□□□ 0.8
CPNE3-201ENST00000517354 NCBP3Q53F19 620 aaKnown RBP19.97■□□□□ 0.79
CPNE3-201ENST00000517354 MAPK8IP2Q13387 824 aaPredicted RBP19.76■□□□□ 0.75
CPNE3-201ENST00000517354 CNKSR2Q8WXI2 1034 aa19.73■□□□□ 0.75
CPNE3-201ENST00000517354 NPM3O75607 178 aaKnown RBP19.52■□□□□ 0.72
CPNE3-201ENST00000517354 DMRT2Q9Y5R5 561 aa19.41■□□□□ 0.7
CPNE3-201ENST00000517354 RNF216Q9NWF9 866 aaPredicted RBP19.26■□□□□ 0.67
CPNE3-201ENST00000517354 SLC4A1APQ9BWU0 796 aaKnown RBP19.22■□□□□ 0.67
CPNE3-201ENST00000517354 HOXD11P31277 338 aaPredicted RBP19.07■□□□□ 0.64
CPNE3-201ENST00000517354 EHMT2Q96KQ7 1210 aa18.93■□□□□ 0.62
CPNE3-201ENST00000517354 DNAJC5BQ9UF47 199 aa18.81■□□□□ 0.6
CPNE3-201ENST00000517354 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
CPNE3-201ENST00000517354 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
CPNE3-201ENST00000517354 POTEDQ86YR6 584 aa18.45■□□□□ 0.54
CPNE3-201ENST00000517354 FOXD4L1Q9NU39 408 aa18.44■□□□□ 0.54
CPNE3-201ENST00000517354 ZBTB22O15209 634 aa18.36■□□□□ 0.53
CPNE3-201ENST00000517354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.35■□□□□ 0.53
CPNE3-201ENST00000517354 SLC4A2P04920 1241 aa18.33■□□□□ 0.52
CPNE3-201ENST00000517354 MYCNP04198 464 aaPredicted RBP18.08■□□□□ 0.48
CPNE3-201ENST00000517354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.92■□□□□ 0.46
CPNE3-201ENST00000517354 HNRNPUL2Q1KMD3 747 aaKnown RBP17.92■□□□□ 0.46
CPNE3-201ENST00000517354 U3KPZ7 1027 aaPredicted RBP17.91■□□□□ 0.46
CPNE3-201ENST00000517354 SAMD1Q6SPF0 538 aaPredicted RBP17.83■□□□□ 0.44
CPNE3-201ENST00000517354 ATXN8OSP0DMR3 200 aa17.78■□□□□ 0.44
CPNE3-201ENST00000517354 APLP2Q06481 763 aa17.72■□□□□ 0.43
CPNE3-201ENST00000517354 RNF39Q9H2S5 420 aa17.72■□□□□ 0.43
CPNE3-201ENST00000517354 C1QBPQ07021 282 aaKnown RBP17.6■□□□□ 0.41
CPNE3-201ENST00000517354 ATF5Q9Y2D1 282 aaPredicted RBP17.49■□□□□ 0.39
CPNE3-201ENST00000517354 CAPN15O75808 1086 aa17.42■□□□□ 0.38
CPNE3-201ENST00000517354 TRHP20396 242 aaPredicted RBP17.39■□□□□ 0.37
CPNE3-201ENST00000517354 SPINK5Q9NQ38 1064 aaPredicted RBP17.37■□□□□ 0.37
CPNE3-201ENST00000517354 ZNF219Q9P2Y4 722 aaPredicted RBP17.35■□□□□ 0.37
CPNE3-201ENST00000517354 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
CPNE3-201ENST00000517354 POLA2Q14181 598 aa17.11■□□□□ 0.33
CPNE3-201ENST00000517354 ABCB7O75027 752 aa17.05■□□□□ 0.32
CPNE3-201ENST00000517354 DSG3P32926 999 aa16.95■□□□□ 0.3
CPNE3-201ENST00000517354 FBLN2P98095 1184 aa16.94■□□□□ 0.3
CPNE3-201ENST00000517354 ZBTB12Q9Y330 459 aaPredicted RBP16.88■□□□□ 0.29
CPNE3-201ENST00000517354 FKBP8Q14318 412 aa16.82■□□□□ 0.28
CPNE3-201ENST00000517354 MKRN4PQ13434 485 aaPredicted RBP16.73■□□□□ 0.27
CPNE3-201ENST00000517354 SPDYE4A6NLX3 237 aa16.6■□□□□ 0.25
CPNE3-201ENST00000517354 OSCARQ8IYS5 282 aa16.46■□□□□ 0.23
CPNE3-201ENST00000517354 ZNF692Q9BU19 519 aaPredicted RBP16.43■□□□□ 0.22
CPNE3-201ENST00000517354 SPDYE2BA6NHP3 402 aa16.4■□□□□ 0.22
CPNE3-201ENST00000517354 SPDYE6P0CI01 402 aa16.4■□□□□ 0.22
CPNE3-201ENST00000517354 SPDYE2Q495Y8 402 aa16.4■□□□□ 0.22
CPNE3-201ENST00000517354 RBM42Q9BTD8 480 aaKnown RBP16.25■□□□□ 0.19
CPNE3-201ENST00000517354 FBXO3Q9UK99 471 aa16.23■□□□□ 0.19
CPNE3-201ENST00000517354 SSUH2Q9Y2M2 353 aa16.2■□□□□ 0.18
CPNE3-201ENST00000517354 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
CPNE3-201ENST00000517354 PROM2Q8N271 834 aa16.18■□□□□ 0.18
CPNE3-201ENST00000517354 AKT1S1Q96B36 256 aa16.06■□□□□ 0.16
CPNE3-201ENST00000517354 STAG3Q9UJ98 1225 aa16.01■□□□□ 0.15
CPNE3-201ENST00000517354 VASPP50552 380 aaPredicted RBP15.9■□□□□ 0.14
CPNE3-201ENST00000517354 SPDYE1Q8NFV5 336 aaPredicted RBP15.9■□□□□ 0.14
CPNE3-201ENST00000517354 REM2Q8IYK8 340 aaPredicted RBP15.89■□□□□ 0.13
CPNE3-201ENST00000517354 CLEC11AQ9Y240 323 aa15.87■□□□□ 0.13
CPNE3-201ENST00000517354 PLCD3Q8N3E9 789 aa15.81■□□□□ 0.12
CPNE3-201ENST00000517354 MIER1Q8N108 512 aa15.8■□□□□ 0.12
CPNE3-201ENST00000517354 PLEKHG5O94827 1062 aa15.79■□□□□ 0.12
CPNE3-201ENST00000517354 PRR29P0C7W0 189 aa15.75■□□□□ 0.11
CPNE3-201ENST00000517354 KLHL34Q8N239 644 aa15.75■□□□□ 0.11
CPNE3-201ENST00000517354 AMER1Q5JTC6 1135 aaPredicted RBP15.71■□□□□ 0.11
CPNE3-201ENST00000517354 IFNLR1Q8IU57 520 aaPredicted RBP15.67■□□□□ 0.1
CPNE3-201ENST00000517354 PITPNM1O00562 1244 aa15.66■□□□□ 0.1
CPNE3-201ENST00000517354 ZBTB47Q9UFB7 747 aaPredicted RBP15.6■□□□□ 0.09
CPNE3-201ENST00000517354 RTN4Q9NQC3 1192 aaKnown RBP15.59■□□□□ 0.09
CPNE3-201ENST00000517354 SPOCK2Q92563 424 aa15.55■□□□□ 0.08
CPNE3-201ENST00000517354 CREBZFQ9NS37 354 aa15.46■□□□□ 0.07
CPNE3-201ENST00000517354 CHRDL2Q6WN34 429 aa15.44■□□□□ 0.06
CPNE3-201ENST00000517354 NPM1P06748 294 aaKnown RBP eCLIP15.37■□□□□ 0.05
CPNE3-201ENST00000517354 CHADLQ6NUI6 762 aa15.37■□□□□ 0.05
CPNE3-201ENST00000517354 PRKAR2AP13861 404 aaKnown RBP15.34■□□□□ 0.05
CPNE3-201ENST00000517354 CIZ1Q9ULV3 898 aaPredicted RBP15.33■□□□□ 0.04
CPNE3-201ENST00000517354 FXR2P51116 673 aaKnown RBP eCLIP15.32■□□□□ 0.04
CPNE3-201ENST00000517354 DCAF8Q5TAQ9 597 aa15.27■□□□□ 0.04
CPNE3-201ENST00000517354 PIP4P2Q8N4L2 257 aa15.27■□□□□ 0.04
CPNE3-201ENST00000517354 MNX1P50219 401 aaPredicted RBP15.25■□□□□ 0.03
CPNE3-201ENST00000517354 FARP1Q9Y4F1 1045 aaPredicted RBP15.25■□□□□ 0.03
CPNE3-201ENST00000517354 GSE1Q14687 1217 aa15.24■□□□□ 0.03
CPNE3-201ENST00000517354 NUBP1P53384 320 aa15.22■□□□□ 0.03
CPNE3-201ENST00000517354 ECM2O94769 699 aaPredicted RBP15.2■□□□□ 0.02
CPNE3-201ENST00000517354 PKD2Q13563 968 aa15.2■□□□□ 0.02
CPNE3-201ENST00000517354 FAM212AQ96EL1 285 aa15.2■□□□□ 0.02
CPNE3-201ENST00000517354 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
CPNE3-201ENST00000517354 TRIM41Q8WV44 630 aa15.12■□□□□ 0.01
CPNE3-201ENST00000517354 RASEFQ8IZ41 740 aa15.11■□□□□ 0.01
CPNE3-201ENST00000517354 TSPYL2Q9H2G4 693 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms