RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 C14orf132Q9NPU4 83 aa1.75□□□□□ -2.13
NUP54-212ENST00000513248 NDUFS5O43920 106 aa1.74□□□□□ -2.13
NUP54-212ENST00000513248 Q6ZQT0 140 aa1.74□□□□□ -2.13
NUP54-212ENST00000513248 NEBP20929 6669 aa1.74□□□□□ -2.13
NUP54-212ENST00000513248 FCGBPQ9Y6R7 5405 aaPredicted RBP1.73□□□□□ -2.13
NUP54-212ENST00000513248 A0A1B0GW54 56 aa1.73□□□□□ -2.13
NUP54-212ENST00000513248 KRTAP19-2Q3LHN2 52 aa1.73□□□□□ -2.13
NUP54-212ENST00000513248 USH2AO75445 5202 aa1.73□□□□□ -2.13
NUP54-212ENST00000513248 MACF1Q9UPN3 7388 aaKnown RBP1.72□□□□□ -2.13
NUP54-212ENST00000513248 LOC110117498A0A087WWA1 95 aa1.72□□□□□ -2.13
NUP54-212ENST00000513248 A8MWP4 228 aa1.72□□□□□ -2.13
NUP54-212ENST00000513248 ZCCHC13Q8WW36 166 aaKnown RBP1.72□□□□□ -2.13
NUP54-212ENST00000513248 A0A1W2PPM0 123 aa1.71□□□□□ -2.14
NUP54-212ENST00000513248 H3BT86 120 aa1.71□□□□□ -2.14
NUP54-212ENST00000513248 SPINK7P58062 85 aa1.71□□□□□ -2.14
NUP54-212ENST00000513248 SPCS1Q9Y6A9 102 aa1.71□□□□□ -2.14
NUP54-212ENST00000513248 IGKV3D-7A0A0C4DH55 119 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 hDV103S1A0JD37 113 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 KRTAP6-3Q3LI67 103 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 WFDC13Q8IUB5 93 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 PRR15Q8IV56 129 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 TMEM254Q8TBM7 123 aa1.7□□□□□ -2.14
NUP54-212ENST00000513248 MRPL34Q9BQ48 92 aaKnown RBP1.7□□□□□ -2.14
NUP54-212ENST00000513248 MUC17Q685J3 4493 aa1.69□□□□□ -2.14
NUP54-212ENST00000513248 TAX1BP3O14907 124 aa1.69□□□□□ -2.14
NUP54-212ENST00000513248 HRES1P13985 223 aa1.69□□□□□ -2.14
NUP54-212ENST00000513248 COL5A1-AS1Q5SY13 56 aa1.69□□□□□ -2.14
NUP54-212ENST00000513248 UBL5Q9BZL1 73 aa1.69□□□□□ -2.14
NUP54-212ENST00000513248 MMP24-AS1A0A0U1RRL7 71 aa1.68□□□□□ -2.14
NUP54-212ENST00000513248 LOC105371267A0A1B0GV96 52 aa1.68□□□□□ -2.14
NUP54-212ENST00000513248 HCG22E2RYF7 251 aa1.68□□□□□ -2.14
NUP54-212ENST00000513248 K7EQZ3 153 aa1.68□□□□□ -2.14
NUP54-212ENST00000513248 CASC2Q6XLA1 102 aa1.68□□□□□ -2.14
NUP54-212ENST00000513248 GTF2H5Q6ZYL4 71 aa1.68□□□□□ -2.14
NUP54-212ENST00000513248 C7orf65Q6ZTY9 151 aa1.67□□□□□ -2.14
NUP54-212ENST00000513248 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
NUP54-212ENST00000513248 SMIM26A0A096LP01 95 aa1.66□□□□□ -2.14
NUP54-212ENST00000513248 K7EP34 96 aa1.66□□□□□ -2.14
NUP54-212ENST00000513248 MUC12Q9UKN1 5478 aa1.66□□□□□ -2.14
NUP54-212ENST00000513248 KMT2DO14686 5537 aa1.65□□□□□ -2.14
NUP54-212ENST00000513248 H1FX-AS1Q4G0G2 97 aa1.65□□□□□ -2.15
NUP54-212ENST00000513248 LINC00846Q9NV44 126 aa1.65□□□□□ -2.15
NUP54-212ENST00000513248 MT2AP02795 61 aa1.64□□□□□ -2.15
NUP54-212ENST00000513248 P0C880 135 aa1.64□□□□□ -2.15
NUP54-212ENST00000513248 C4orf26Q17RF5 130 aa1.64□□□□□ -2.15
NUP54-212ENST00000513248 SPINT4Q6UDR6 99 aa1.64□□□□□ -2.15
NUP54-212ENST00000513248 FAM236AA0A1B0GUQ0 79 aa1.63□□□□□ -2.15
NUP54-212ENST00000513248 FAM236BA0A1B0GV22 79 aa1.63□□□□□ -2.15
NUP54-212ENST00000513248 F8W1H4 67 aa1.63□□□□□ -2.15
NUP54-212ENST00000513248 ETDBQ3ZM63 59 aa1.63□□□□□ -2.15
NUP54-212ENST00000513248 MT1FP04733 61 aa1.62□□□□□ -2.15
NUP54-212ENST00000513248 HIST1H4AP62805 103 aaKnown RBP1.62□□□□□ -2.15
NUP54-212ENST00000513248 C1orf64Q8NEQ6 169 aa1.62□□□□□ -2.15
NUP54-212ENST00000513248 TP53AIP1Q9HCN2 124 aa1.62□□□□□ -2.15
NUP54-212ENST00000513248 ACYP1P07311 99 aa1.61□□□□□ -2.15
NUP54-212ENST00000513248 KRTAP12-3P60328 96 aa1.61□□□□□ -2.15
NUP54-212ENST00000513248 S4R3F8 94 aa1.61□□□□□ -2.15
NUP54-212ENST00000513248 CSAG1Q6PB30 78 aa1.6□□□□□ -2.15
NUP54-212ENST00000513248 TRAV22A0A0B4J277 110 aa1.59□□□□□ -2.15
NUP54-212ENST00000513248 LOC101927531A0A1B0GV80 90 aa1.59□□□□□ -2.15
NUP54-212ENST00000513248 KRTAP12-4P60329 112 aa1.59□□□□□ -2.15
NUP54-212ENST00000513248 ATP5EP2Q5VTU8 51 aa1.59□□□□□ -2.15
NUP54-212ENST00000513248 H0Y9P7 68 aa1.58□□□□□ -2.16
NUP54-212ENST00000513248 UQCRQO14949 82 aa1.58□□□□□ -2.16
NUP54-212ENST00000513248 KRTAP2-3P0C7H8 128 aa1.58□□□□□ -2.16
NUP54-212ENST00000513248 LUZP6Q538Z0 58 aa1.58□□□□□ -2.16
NUP54-212ENST00000513248 KRTAP2-4Q9BYR9 128 aa1.58□□□□□ -2.16
NUP54-212ENST00000513248 V9GYY9 64 aa1.58□□□□□ -2.16
NUP54-212ENST00000513248 ATOX1O00244 68 aa1.57□□□□□ -2.16
NUP54-212ENST00000513248 LCA10Q71F78 164 aa1.57□□□□□ -2.16
NUP54-212ENST00000513248 CYP4F30PQ9H0H9 118 aa1.57□□□□□ -2.16
NUP54-212ENST00000513248 FAM240AA0A1B0GVK7 77 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 J3QR89 54 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 PSPHP1O15172 72 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 NDUFC1O43677 76 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 SCGB1A1P11684 91 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 MP68P56378 58 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 LINC00643Q86TS7 51 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 IMUPQ9GZP8 106 aa1.56□□□□□ -2.16
NUP54-212ENST00000513248 A0A087WVE0 104 aa1.55□□□□□ -2.16
NUP54-212ENST00000513248 Q5VV11 94 aa1.55□□□□□ -2.16
NUP54-212ENST00000513248 ADM2Q7Z4H4 148 aa1.55□□□□□ -2.16
NUP54-212ENST00000513248 LINC00208Q96KT6 92 aa1.55□□□□□ -2.16
NUP54-212ENST00000513248 FLGP20930 4061 aaPredicted RBP1.54□□□□□ -2.16
NUP54-212ENST00000513248 A0A1B0GV90 55 aa1.54□□□□□ -2.16
NUP54-212ENST00000513248 A6NN06 94 aa1.54□□□□□ -2.16
NUP54-212ENST00000513248 KLKP1Q107X0 134 aa1.54□□□□□ -2.16
NUP54-212ENST00000513248 KRTAP19-6Q3LI70 58 aa1.54□□□□□ -2.16
NUP54-212ENST00000513248 MDN1Q9NU22 5596 aa1.53□□□□□ -2.16
NUP54-212ENST00000513248 A8MUN3 132 aa1.53□□□□□ -2.16
NUP54-212ENST00000513248 CRIPTQ9P021 101 aa1.52□□□□□ -2.17
NUP54-212ENST00000513248 R4GN34 69 aa1.52□□□□□ -2.17
NUP54-212ENST00000513248 H3BPC8 53 aa1.51□□□□□ -2.17
NUP54-212ENST00000513248 C20orf197Q8N268 126 aa1.51□□□□□ -2.17
NUP54-212ENST00000513248 KRTAP2-1Q9BYU5 128 aa1.51□□□□□ -2.17
NUP54-212ENST00000513248 CHKB-CPT1BH3BT56 60 aa1.5□□□□□ -2.17
NUP54-212ENST00000513248 PLAC4Q8WY50 150 aa1.5□□□□□ -2.17
NUP54-212ENST00000513248 SPRR2GQ9BYE4 73 aa1.5□□□□□ -2.17
NUP54-212ENST00000513248 SPTSSBQ8NFR3 76 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 1524.2 ms