RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PKHD1L1Q86WI1 4243 aa8.86□□□□□ -0.99
MSH5-SAPCD1-208ENST00000498473 ROMO1P60602 79 aa8.84□□□□□ -0.99
MSH5-SAPCD1-208ENST00000498473 Q8N1X5 172 aa8.84□□□□□ -0.99
MSH5-SAPCD1-208ENST00000498473 FAT3Q8TDW7 4589 aa8.77□□□□□ -1.01
MSH5-SAPCD1-208ENST00000498473 KRTAP25-1Q3LHN0 102 aa8.74□□□□□ -1.01
MSH5-SAPCD1-208ENST00000498473 A8MUU9 505 aa8.72□□□□□ -1.01
MSH5-SAPCD1-208ENST00000498473 TNXBP22105 4242 aa8.72□□□□□ -1.01
MSH5-SAPCD1-208ENST00000498473 C9orf92A6NGG3 77 aa8.72□□□□□ -1.01
MSH5-SAPCD1-208ENST00000498473 C20orf166-AS1Q96NR2 134 aa8.72□□□□□ -1.01
MSH5-SAPCD1-208ENST00000498473 DMBT1Q9UGM3 2413 aaPredicted RBP8.71□□□□□ -1.02
MSH5-SAPCD1-208ENST00000498473 KRTAP3-1Q9BYR8 98 aa8.64□□□□□ -1.03
MSH5-SAPCD1-208ENST00000498473 HERC1Q15751 4861 aa8.62□□□□□ -1.03
MSH5-SAPCD1-208ENST00000498473 P0C880 135 aa8.55□□□□□ -1.04
MSH5-SAPCD1-208ENST00000498473 MT1HL1P0DM35 61 aa8.53□□□□□ -1.04
MSH5-SAPCD1-208ENST00000498473 H0YAA0 97 aa8.48□□□□□ -1.05
MSH5-SAPCD1-208ENST00000498473 KRTAP10-8P60410 259 aa8.48□□□□□ -1.05
MSH5-SAPCD1-208ENST00000498473 J3QL48 77 aa8.45□□□□□ -1.06
MSH5-SAPCD1-208ENST00000498473 COX6B2Q6YFQ2 88 aa8.44□□□□□ -1.06
MSH5-SAPCD1-208ENST00000498473 LPAP08519 4548 aa8.42□□□□□ -1.06
MSH5-SAPCD1-208ENST00000498473 A0A1B0GU33 70 aa8.41□□□□□ -1.06
MSH5-SAPCD1-208ENST00000498473 H1FX-AS1Q4G0G2 97 aa8.39□□□□□ -1.07
MSH5-SAPCD1-208ENST00000498473 A0A0A0MQY5 61 aa8.38□□□□□ -1.07
MSH5-SAPCD1-208ENST00000498473 LRP2P98164 4655 aa8.29□□□□□ -1.08
MSH5-SAPCD1-208ENST00000498473 RPL37P61927 97 aaKnown RBP8.29□□□□□ -1.08
MSH5-SAPCD1-208ENST00000498473 KRTAP3-3Q9BYR6 98 aa8.27□□□□□ -1.08
MSH5-SAPCD1-208ENST00000498473 K7ERS5 55 aa8.26□□□□□ -1.09
MSH5-SAPCD1-208ENST00000498473 XP32Q5T750 250 aa8.26□□□□□ -1.09
MSH5-SAPCD1-208ENST00000498473 HMCN2Q8NDA2 5059 aa8.24□□□□□ -1.09
MSH5-SAPCD1-208ENST00000498473 SPINT4Q6UDR6 99 aa8.22□□□□□ -1.09
MSH5-SAPCD1-208ENST00000498473 KRTAP10-6P60371 365 aaPredicted RBP8.21□□□□□ -1.1
MSH5-SAPCD1-208ENST00000498473 NDUFAF8A1L188 74 aa8.2□□□□□ -1.1
MSH5-SAPCD1-208ENST00000498473 CRIPTQ9P021 101 aa8.19□□□□□ -1.1
MSH5-SAPCD1-208ENST00000498473 KRTAP15-1Q3LI76 137 aa8.17□□□□□ -1.1
MSH5-SAPCD1-208ENST00000498473 KRTAP3-2Q9BYR7 98 aa8.15□□□□□ -1.1
MSH5-SAPCD1-208ENST00000498473 UBR4Q5T4S7 5183 aa8.15□□□□□ -1.1
MSH5-SAPCD1-208ENST00000498473 MUC2Q02817 5179 aa8.13□□□□□ -1.11
MSH5-SAPCD1-208ENST00000498473 S4R3F8 94 aa8.13□□□□□ -1.11
MSH5-SAPCD1-208ENST00000498473 KRTAP13-4Q3LI77 160 aa8.12□□□□□ -1.11
MSH5-SAPCD1-208ENST00000498473 RNF213Q63HN8 5207 aa8.09□□□□□ -1.11
MSH5-SAPCD1-208ENST00000498473 TPRXLQ17RH7 258 aa8.03□□□□□ -1.12
MSH5-SAPCD1-208ENST00000498473 A0A0D9SG42 100 aa7.99□□□□□ -1.13
MSH5-SAPCD1-208ENST00000498473 LUZP6Q538Z0 58 aa7.87□□□□□ -1.15
MSH5-SAPCD1-208ENST00000498473 KRTAP12-2P59991 146 aa7.84□□□□□ -1.15
MSH5-SAPCD1-208ENST00000498473 C10orf95Q9H7T3 257 aa7.81□□□□□ -1.16
MSH5-SAPCD1-208ENST00000498473 KRTAP12-1P59990 96 aa7.79□□□□□ -1.16
MSH5-SAPCD1-208ENST00000498473 KRTAP4-1Q9BYQ7 146 aa7.76□□□□□ -1.17
MSH5-SAPCD1-208ENST00000498473 FAT4Q6V0I7 4981 aa7.74□□□□□ -1.17
MSH5-SAPCD1-208ENST00000498473 MUC17Q685J3 4493 aa7.73□□□□□ -1.17
MSH5-SAPCD1-208ENST00000498473 M0QZ58 72 aa7.72□□□□□ -1.17
MSH5-SAPCD1-208ENST00000498473 SEC61BP60468 96 aaKnown RBP7.64□□□□□ -1.19
MSH5-SAPCD1-208ENST00000498473 LORP23490 312 aaPredicted RBP7.52□□□□□ -1.21
MSH5-SAPCD1-208ENST00000498473 R4GN34 69 aa7.52□□□□□ -1.21
MSH5-SAPCD1-208ENST00000498473 KRTAP19-2Q3LHN2 52 aa7.49□□□□□ -1.21
MSH5-SAPCD1-208ENST00000498473 PLAC4Q8WY50 150 aa7.41□□□□□ -1.22
MSH5-SAPCD1-208ENST00000498473 FLGP20930 4061 aaPredicted RBP7.39□□□□□ -1.23
MSH5-SAPCD1-208ENST00000498473 LCE2CQ5TA81 110 aa7.35□□□□□ -1.23
MSH5-SAPCD1-208ENST00000498473 MT1HP80294 61 aa7.23□□□□□ -1.25
MSH5-SAPCD1-208ENST00000498473 M0R2T5 61 aa7.19□□□□□ -1.26
MSH5-SAPCD1-208ENST00000498473 CAMK2N1Q7Z7J9 78 aa7.16□□□□□ -1.26
MSH5-SAPCD1-208ENST00000498473 LCE2AQ5TA79 106 aaPredicted RBP7.11□□□□□ -1.27
MSH5-SAPCD1-208ENST00000498473 PP632Q6XCG6 107 aa7.03□□□□□ -1.28
MSH5-SAPCD1-208ENST00000498473 FSIP2Q5CZC0 6907 aa6.96□□□□□ -1.3
MSH5-SAPCD1-208ENST00000498473 PRO2289Q9P1D8 64 aa6.95□□□□□ -1.3
MSH5-SAPCD1-208ENST00000498473 KRTAP9-8Q9BYQ0 159 aa6.91□□□□□ -1.3
MSH5-SAPCD1-208ENST00000498473 TNP1P09430 55 aa6.88□□□□□ -1.31
MSH5-SAPCD1-208ENST00000498473 MT2AP02795 61 aa6.86□□□□□ -1.31
MSH5-SAPCD1-208ENST00000498473 MT1FP04733 61 aa6.86□□□□□ -1.31
MSH5-SAPCD1-208ENST00000498473 SPRR2GQ9BYE4 73 aa6.86□□□□□ -1.31
MSH5-SAPCD1-208ENST00000498473 KRTAP19-1Q8IUB9 90 aa6.85□□□□□ -1.31
MSH5-SAPCD1-208ENST00000498473 USH2AO75445 5202 aa6.84□□□□□ -1.31
MSH5-SAPCD1-208ENST00000498473 SPRR5A0A1B0GTR4 108 aa6.84□□□□□ -1.32
MSH5-SAPCD1-208ENST00000498473 KRTAP23-1A1A580 65 aa6.83□□□□□ -1.32
MSH5-SAPCD1-208ENST00000498473 KRTAP10-10P60014 251 aa6.82□□□□□ -1.32
MSH5-SAPCD1-208ENST00000498473 INE1O15225 51 aa6.72□□□□□ -1.33
MSH5-SAPCD1-208ENST00000498473 KRTAP9-3Q9BYQ3 159 aa6.64□□□□□ -1.35
MSH5-SAPCD1-208ENST00000498473 LCE2BO14633 110 aa6.6□□□□□ -1.35
MSH5-SAPCD1-208ENST00000498473 KRTAP19-8Q3LI54 63 aa6.57□□□□□ -1.36
MSH5-SAPCD1-208ENST00000498473 LCE3AQ5TA76 89 aa6.56□□□□□ -1.36
MSH5-SAPCD1-208ENST00000498473 KRTAP9-2Q9BYQ4 174 aa6.54□□□□□ -1.36
MSH5-SAPCD1-208ENST00000498473 SSPOA2VEC9 5147 aa6.54□□□□□ -1.36
MSH5-SAPCD1-208ENST00000498473 MT1BP07438 61 aa6.49□□□□□ -1.37
MSH5-SAPCD1-208ENST00000498473 KRTAP10-5P60370 271 aa6.46□□□□□ -1.38
MSH5-SAPCD1-208ENST00000498473 MT1XP80297 61 aa6.44□□□□□ -1.38
MSH5-SAPCD1-208ENST00000498473 LCE2DQ5TA82 110 aaPredicted RBP6.43□□□□□ -1.38
MSH5-SAPCD1-208ENST00000498473 KRTAP8-1Q8IUC2 63 aa6.41□□□□□ -1.38
MSH5-SAPCD1-208ENST00000498473 KRTAP10-12P60413 245 aa6.27□□□□□ -1.4
MSH5-SAPCD1-208ENST00000498473 FCGBPQ9Y6R7 5405 aaPredicted RBP6.27□□□□□ -1.4
MSH5-SAPCD1-208ENST00000498473 KRTAP10-7P60409 375 aaPredicted RBP6.26□□□□□ -1.41
MSH5-SAPCD1-208ENST00000498473 KRTAP12-3P60328 96 aa6.23□□□□□ -1.41
MSH5-SAPCD1-208ENST00000498473 CRCT1Q9UGL9 99 aa6.22□□□□□ -1.41
MSH5-SAPCD1-208ENST00000498473 KMT2DO14686 5537 aa6.21□□□□□ -1.41
MSH5-SAPCD1-208ENST00000498473 MACF1Q9UPN3 7388 aaKnown RBP6.12□□□□□ -1.43
MSH5-SAPCD1-208ENST00000498473 KRTAP9-6A0A140TA67 174 aa6.1□□□□□ -1.43
MSH5-SAPCD1-208ENST00000498473 KRTAP19-6Q3LI70 58 aa6.1□□□□□ -1.43
MSH5-SAPCD1-208ENST00000498473 SYNE2Q8WXH0 6885 aaKnown RBP6.08□□□□□ -1.44
MSH5-SAPCD1-208ENST00000498473 KRTAP19-5Q3LI72 72 aa5.99□□□□□ -1.45
MSH5-SAPCD1-208ENST00000498473 LCE3CQ5T5A8 94 aa5.89□□□□□ -1.47
MSH5-SAPCD1-208ENST00000498473 KRTAP4-8A0A0G2JLE6 195 aa5.87□□□□□ -1.47
MSH5-SAPCD1-208ENST00000498473 KRTAP4-8Q9BYQ9 185 aa5.87□□□□□ -1.47
MSH5-SAPCD1-208ENST00000498473 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms