RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 HERC1Q15751 4861 aa6.71□□□□□ -1.34
BRCA1-222ENST00000493919 PRLHP81277 87 aa6.69□□□□□ -1.34
BRCA1-222ENST00000493919 Q96NJ1 140 aa6.66□□□□□ -1.34
BRCA1-222ENST00000493919 TNXBP22105 4242 aa6.66□□□□□ -1.34
BRCA1-222ENST00000493919 KRTAP13-1Q8IUC0 172 aa6.64□□□□□ -1.35
BRCA1-222ENST00000493919 SPRR1AP35321 89 aa6.62□□□□□ -1.35
BRCA1-222ENST00000493919 KRTAP1-4P0C5Y4 121 aa6.6□□□□□ -1.35
BRCA1-222ENST00000493919 MT1HL1P0DM35 61 aa6.59□□□□□ -1.35
BRCA1-222ENST00000493919 MMP24-AS1A0A0U1RRL7 71 aa6.58□□□□□ -1.36
BRCA1-222ENST00000493919 Q6ZRX8 168 aa6.58□□□□□ -1.36
BRCA1-222ENST00000493919 SSBP3-AS1Q7Z2R9 100 aa6.58□□□□□ -1.36
BRCA1-222ENST00000493919 ANAPC11Q9NYG5 84 aa6.58□□□□□ -1.36
BRCA1-222ENST00000493919 DEFB105AQ8NG35 78 aa6.57□□□□□ -1.36
BRCA1-222ENST00000493919 KRTAP10-8P60410 259 aa6.54□□□□□ -1.36
BRCA1-222ENST00000493919 TYMSOSQ8TAI1 123 aa6.51□□□□□ -1.37
BRCA1-222ENST00000493919 HMCN2Q8NDA2 5059 aa6.51□□□□□ -1.37
BRCA1-222ENST00000493919 KRTAP13-2Q52LG2 175 aa6.49□□□□□ -1.37
BRCA1-222ENST00000493919 A0A1B0GU33 70 aa6.48□□□□□ -1.37
BRCA1-222ENST00000493919 IGFL1Q6UW32 110 aa6.46□□□□□ -1.38
BRCA1-222ENST00000493919 A0A0G2JQZ4 141 aa6.41□□□□□ -1.38
BRCA1-222ENST00000493919 LOC100996750A0A140TA64 210 aa6.4□□□□□ -1.38
BRCA1-222ENST00000493919 KRTAP4-6Q9BYQ5 205 aa6.4□□□□□ -1.38
BRCA1-222ENST00000493919 SPRR1BP22528 89 aa6.39□□□□□ -1.39
BRCA1-222ENST00000493919 H0YAA0 97 aa6.38□□□□□ -1.39
BRCA1-222ENST00000493919 KRTAP23-1A1A580 65 aa6.37□□□□□ -1.39
BRCA1-222ENST00000493919 LRP2P98164 4655 aa6.37□□□□□ -1.39
BRCA1-222ENST00000493919 MRPL34Q9BQ48 92 aaKnown RBP6.37□□□□□ -1.39
BRCA1-222ENST00000493919 CRIPTQ9P021 101 aa6.36□□□□□ -1.39
BRCA1-222ENST00000493919 LPAP08519 4548 aa6.35□□□□□ -1.39
BRCA1-222ENST00000493919 TPRXLQ17RH7 258 aa6.34□□□□□ -1.39
BRCA1-222ENST00000493919 SPINK1P00995 79 aa6.32□□□□□ -1.4
BRCA1-222ENST00000493919 KRTAP13-3Q3SY46 172 aa6.32□□□□□ -1.4
BRCA1-222ENST00000493919 UBR4Q5T4S7 5183 aa6.3□□□□□ -1.4
BRCA1-222ENST00000493919 RPS29P62273 56 aaKnown RBP6.27□□□□□ -1.41
BRCA1-222ENST00000493919 PRO2289Q9P1D8 64 aa6.27□□□□□ -1.41
BRCA1-222ENST00000493919 COX6B2Q6YFQ2 88 aa6.2□□□□□ -1.42
BRCA1-222ENST00000493919 H1FX-AS1Q4G0G2 97 aa6.19□□□□□ -1.42
BRCA1-222ENST00000493919 IGKV2-30P06310 120 aa6.14□□□□□ -1.43
BRCA1-222ENST00000493919 RNF213Q63HN8 5207 aa6.14□□□□□ -1.43
BRCA1-222ENST00000493919 IGKV2D-30A0A075B6S6 120 aa6.11□□□□□ -1.43
BRCA1-222ENST00000493919 C9orf92A6NGG3 77 aa6.1□□□□□ -1.43
BRCA1-222ENST00000493919 PLAC4Q8WY50 150 aa6.1□□□□□ -1.43
BRCA1-222ENST00000493919 MUC17Q685J3 4493 aa6.07□□□□□ -1.44
BRCA1-222ENST00000493919 MUC2Q02817 5179 aa6.06□□□□□ -1.44
BRCA1-222ENST00000493919 RPL37P61927 97 aaKnown RBP6.06□□□□□ -1.44
BRCA1-222ENST00000493919 XP32Q5T750 250 aa6.04□□□□□ -1.44
BRCA1-222ENST00000493919 R4GN34 69 aa6.03□□□□□ -1.44
BRCA1-222ENST00000493919 C10orf95Q9H7T3 257 aa6.03□□□□□ -1.44
BRCA1-222ENST00000493919 INE1O15225 51 aa5.92□□□□□ -1.46
BRCA1-222ENST00000493919 LCE2BO14633 110 aa5.91□□□□□ -1.46
BRCA1-222ENST00000493919 FAT4Q6V0I7 4981 aa5.88□□□□□ -1.47
BRCA1-222ENST00000493919 KRTAP4-1Q9BYQ7 146 aa5.87□□□□□ -1.47
BRCA1-222ENST00000493919 LCE2AQ5TA79 106 aaPredicted RBP5.7□□□□□ -1.5
BRCA1-222ENST00000493919 S4R3F8 94 aa5.7□□□□□ -1.5
BRCA1-222ENST00000493919 KRTAP12-2P59991 146 aa5.68□□□□□ -1.5
BRCA1-222ENST00000493919 KRTAP19-2Q3LHN2 52 aa5.67□□□□□ -1.5
BRCA1-222ENST00000493919 LCE2CQ5TA81 110 aa5.66□□□□□ -1.5
BRCA1-222ENST00000493919 KRTAP4-8Q9BYQ9 185 aa5.65□□□□□ -1.51
BRCA1-222ENST00000493919 MT1HP80294 61 aa5.6□□□□□ -1.51
BRCA1-222ENST00000493919 FLGP20930 4061 aaPredicted RBP5.6□□□□□ -1.51
BRCA1-222ENST00000493919 M0R2T5 61 aa5.57□□□□□ -1.52
BRCA1-222ENST00000493919 A0A0D9SG42 100 aa5.56□□□□□ -1.52
BRCA1-222ENST00000493919 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.51□□□□□ -1.53
BRCA1-222ENST00000493919 KRTAP13-4Q3LI77 160 aa5.51□□□□□ -1.53
BRCA1-222ENST00000493919 KRTAP9-2Q9BYQ4 174 aa5.5□□□□□ -1.53
BRCA1-222ENST00000493919 KRTAP10-6P60371 365 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-222ENST00000493919 PP632Q6XCG6 107 aa5.5□□□□□ -1.53
BRCA1-222ENST00000493919 KRTAP9-6A0A140TA67 174 aa5.48□□□□□ -1.53
BRCA1-222ENST00000493919 SPRR5A0A1B0GTR4 108 aa5.47□□□□□ -1.53
BRCA1-222ENST00000493919 KRTAP12-1P59990 96 aa5.44□□□□□ -1.54
BRCA1-222ENST00000493919 LORP23490 312 aaPredicted RBP5.42□□□□□ -1.54
BRCA1-222ENST00000493919 KRTAP3-1Q9BYR8 98 aa5.42□□□□□ -1.54
BRCA1-222ENST00000493919 LCE3BQ5TA77 95 aa5.37□□□□□ -1.55
BRCA1-222ENST00000493919 KRTAP4-8A0A0G2JLE6 195 aa5.31□□□□□ -1.56
BRCA1-222ENST00000493919 KRTAP9-8Q9BYQ0 159 aa5.31□□□□□ -1.56
BRCA1-222ENST00000493919 FSIP2Q5CZC0 6907 aa5.28□□□□□ -1.56
BRCA1-222ENST00000493919 MT2AP02795 61 aa5.28□□□□□ -1.56
BRCA1-222ENST00000493919 M0QZ58 72 aa5.25□□□□□ -1.57
BRCA1-222ENST00000493919 MT1FP04733 61 aa5.25□□□□□ -1.57
BRCA1-222ENST00000493919 KRTAP10-10P60014 251 aa5.24□□□□□ -1.57
BRCA1-222ENST00000493919 KRTAP9-9Q9BYP9 154 aa5.22□□□□□ -1.57
BRCA1-222ENST00000493919 KRTAP9-4Q9BYQ2 154 aa5.22□□□□□ -1.57
BRCA1-222ENST00000493919 KRTAP4-7Q9BYR0 210 aa5.18□□□□□ -1.58
BRCA1-222ENST00000493919 KRTAP4-12Q9BQ66 201 aa5.17□□□□□ -1.58
BRCA1-222ENST00000493919 KRTAP9-3Q9BYQ3 159 aa5.13□□□□□ -1.59
BRCA1-222ENST00000493919 USH2AO75445 5202 aa5.13□□□□□ -1.59
BRCA1-222ENST00000493919 CRCT1Q9UGL9 99 aa5.08□□□□□ -1.6
BRCA1-222ENST00000493919 SSPOA2VEC9 5147 aa5.06□□□□□ -1.6
BRCA1-222ENST00000493919 LCE1DQ5T752 114 aa5.02□□□□□ -1.61
BRCA1-222ENST00000493919 KRTAP19-1Q8IUB9 90 aa4.97□□□□□ -1.61
BRCA1-222ENST00000493919 KRTAP4-9Q9BYQ8 210 aa4.94□□□□□ -1.62
BRCA1-222ENST00000493919 SPRR2GQ9BYE4 73 aa4.93□□□□□ -1.62
BRCA1-222ENST00000493919 KRTAP4-2Q9BYR5 136 aa4.91□□□□□ -1.62
BRCA1-222ENST00000493919 FCGBPQ9Y6R7 5405 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-222ENST00000493919 MT1BP07438 61 aa4.85□□□□□ -1.63
BRCA1-222ENST00000493919 KRTAP19-8Q3LI54 63 aa4.85□□□□□ -1.63
BRCA1-222ENST00000493919 KRTAP19-6Q3LI70 58 aa4.85□□□□□ -1.63
BRCA1-222ENST00000493919 KRTAP5-3Q6L8H2 238 aa4.81□□□□□ -1.64
BRCA1-222ENST00000493919 MACF1Q9UPN3 7388 aaKnown RBP4.75□□□□□ -1.65
BRCA1-222ENST00000493919 KRTAP10-5P60370 271 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms