RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 ADM2Q7Z4H4 148 aa6.5□□□□□ -1.37
HMGN1-220ENST00000492280 SPATA8Q6RVD6 105 aa6.5□□□□□ -1.37
HMGN1-220ENST00000492280 XP32Q5T750 250 aa6.49□□□□□ -1.37
HMGN1-220ENST00000492280 PRAC1Q96KF2 57 aa6.48□□□□□ -1.37
HMGN1-220ENST00000492280 SEC61GP60059 68 aa6.48□□□□□ -1.37
HMGN1-220ENST00000492280 MT1HL1P0DM35 61 aa6.47□□□□□ -1.37
HMGN1-220ENST00000492280 COX6B2Q6YFQ2 88 aa6.47□□□□□ -1.37
HMGN1-220ENST00000492280 BIRC6Q9NR09 4857 aa6.45□□□□□ -1.38
HMGN1-220ENST00000492280 H0YAA0 97 aa6.44□□□□□ -1.38
HMGN1-220ENST00000492280 RPL37P61927 97 aaKnown RBP6.44□□□□□ -1.38
HMGN1-220ENST00000492280 KRTAP4-5Q9BYR2 181 aa6.42□□□□□ -1.38
HMGN1-220ENST00000492280 RBM12B-AS1Q9P1G2 102 aa6.4□□□□□ -1.39
HMGN1-220ENST00000492280 A0A1B0GU33 70 aa6.37□□□□□ -1.39
HMGN1-220ENST00000492280 KRTAP3-3Q9BYR6 98 aa6.35□□□□□ -1.39
HMGN1-220ENST00000492280 H1FX-AS1Q4G0G2 97 aa6.34□□□□□ -1.39
HMGN1-220ENST00000492280 HERC2O95714 4834 aa6.33□□□□□ -1.4
HMGN1-220ENST00000492280 S4R3F8 94 aa6.28□□□□□ -1.4
HMGN1-220ENST00000492280 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
HMGN1-220ENST00000492280 A0A0D9SG42 100 aa6.27□□□□□ -1.41
HMGN1-220ENST00000492280 KRTAP10-6P60371 365 aaPredicted RBP6.26□□□□□ -1.41
HMGN1-220ENST00000492280 MUC2Q02817 5179 aa6.24□□□□□ -1.41
HMGN1-220ENST00000492280 P0C880 135 aa6.24□□□□□ -1.41
HMGN1-220ENST00000492280 CSAG1Q6PB30 78 aa6.23□□□□□ -1.41
HMGN1-220ENST00000492280 KRTAP3-2Q9BYR7 98 aa6.22□□□□□ -1.41
HMGN1-220ENST00000492280 CRIPTQ9P021 101 aa6.21□□□□□ -1.42
HMGN1-220ENST00000492280 TPRXLQ17RH7 258 aa6.19□□□□□ -1.42
HMGN1-220ENST00000492280 PCLOQ9Y6V0 5065 aa6.18□□□□□ -1.42
HMGN1-220ENST00000492280 MUC17Q685J3 4493 aa6.17□□□□□ -1.42
HMGN1-220ENST00000492280 J3QL48 77 aa6.15□□□□□ -1.43
HMGN1-220ENST00000492280 HERC1Q15751 4861 aa6.14□□□□□ -1.43
HMGN1-220ENST00000492280 KRTAP4-1Q9BYQ7 146 aa6.08□□□□□ -1.44
HMGN1-220ENST00000492280 K7ERS5 55 aa6.06□□□□□ -1.44
HMGN1-220ENST00000492280 LINC01554Q52M75 96 aa6.05□□□□□ -1.44
HMGN1-220ENST00000492280 KRTAP12-2P59991 146 aa6.03□□□□□ -1.44
HMGN1-220ENST00000492280 SPINT4Q6UDR6 99 aa6.01□□□□□ -1.45
HMGN1-220ENST00000492280 SEC61BP60468 96 aaKnown RBP5.99□□□□□ -1.45
HMGN1-220ENST00000492280 KRTAP25-1Q3LHN0 102 aa5.98□□□□□ -1.45
HMGN1-220ENST00000492280 FAT4Q6V0I7 4981 aa5.97□□□□□ -1.45
HMGN1-220ENST00000492280 ROMO1P60602 79 aa5.95□□□□□ -1.46
HMGN1-220ENST00000492280 C10orf95Q9H7T3 257 aa5.95□□□□□ -1.46
HMGN1-220ENST00000492280 LORP23490 312 aaPredicted RBP5.94□□□□□ -1.46
HMGN1-220ENST00000492280 KRTAP12-1P59990 96 aa5.93□□□□□ -1.46
HMGN1-220ENST00000492280 HMCN2Q8NDA2 5059 aa5.92□□□□□ -1.46
HMGN1-220ENST00000492280 M0QZ58 72 aa5.91□□□□□ -1.46
HMGN1-220ENST00000492280 LCE2DQ5TA82 110 aaPredicted RBP5.9□□□□□ -1.46
HMGN1-220ENST00000492280 RNF213Q63HN8 5207 aa5.88□□□□□ -1.47
HMGN1-220ENST00000492280 R4GN34 69 aa5.86□□□□□ -1.47
HMGN1-220ENST00000492280 KRTAP19-2Q3LHN2 52 aa5.84□□□□□ -1.47
HMGN1-220ENST00000492280 FLGP20930 4061 aaPredicted RBP5.84□□□□□ -1.47
HMGN1-220ENST00000492280 UBR4Q5T4S7 5183 aa5.81□□□□□ -1.48
HMGN1-220ENST00000492280 LCE2CQ5TA81 110 aa5.56□□□□□ -1.52
HMGN1-220ENST00000492280 CAMK2N1Q7Z7J9 78 aa5.56□□□□□ -1.52
HMGN1-220ENST00000492280 M0R2T5 61 aa5.52□□□□□ -1.53
HMGN1-220ENST00000492280 H3BS24 57 aa5.43□□□□□ -1.54
HMGN1-220ENST00000492280 MT1HP80294 61 aa5.43□□□□□ -1.54
HMGN1-220ENST00000492280 KRTAP15-1Q3LI76 137 aa5.43□□□□□ -1.54
HMGN1-220ENST00000492280 KRTAP19-1Q8IUB9 90 aa5.37□□□□□ -1.55
HMGN1-220ENST00000492280 NDUFAF8A1L188 74 aa5.35□□□□□ -1.55
HMGN1-220ENST00000492280 MT1FP04733 61 aa5.35□□□□□ -1.55
HMGN1-220ENST00000492280 KRTAP10-10P60014 251 aa5.33□□□□□ -1.56
HMGN1-220ENST00000492280 MT2AP02795 61 aa5.32□□□□□ -1.56
HMGN1-220ENST00000492280 SPRR2GQ9BYE4 73 aa5.29□□□□□ -1.56
HMGN1-220ENST00000492280 PLAC4Q8WY50 150 aa5.27□□□□□ -1.57
HMGN1-220ENST00000492280 KRTAP9-8Q9BYQ0 159 aa5.27□□□□□ -1.57
HMGN1-220ENST00000492280 TNP1P09430 55 aa5.25□□□□□ -1.57
HMGN1-220ENST00000492280 USH2AO75445 5202 aa5.23□□□□□ -1.57
HMGN1-220ENST00000492280 PP632Q6XCG6 107 aa5.18□□□□□ -1.58
HMGN1-220ENST00000492280 MT1BP07438 61 aa5.11□□□□□ -1.59
HMGN1-220ENST00000492280 LCE3AQ5TA76 89 aa5.11□□□□□ -1.59
HMGN1-220ENST00000492280 KMT2DO14686 5537 aa5.08□□□□□ -1.6
HMGN1-220ENST00000492280 KRTAP19-8Q3LI54 63 aa5.05□□□□□ -1.6
HMGN1-220ENST00000492280 MT1XP80297 61 aa5.05□□□□□ -1.6
HMGN1-220ENST00000492280 KRTAP10-5P60370 271 aa5.04□□□□□ -1.6
HMGN1-220ENST00000492280 KRTAP9-3Q9BYQ3 159 aa5.04□□□□□ -1.6
HMGN1-220ENST00000492280 LCE2AQ5TA79 106 aaPredicted RBP4.99□□□□□ -1.61
HMGN1-220ENST00000492280 KRTAP10-7P60409 375 aaPredicted RBP4.96□□□□□ -1.61
HMGN1-220ENST00000492280 KRTAP23-1A1A580 65 aa4.95□□□□□ -1.62
HMGN1-220ENST00000492280 LUZP6Q538Z0 58 aa4.95□□□□□ -1.62
HMGN1-220ENST00000492280 LCE2BO14633 110 aa4.93□□□□□ -1.62
HMGN1-220ENST00000492280 FSIP2Q5CZC0 6907 aa4.9□□□□□ -1.62
HMGN1-220ENST00000492280 KRTAP10-12P60413 245 aa4.9□□□□□ -1.63
HMGN1-220ENST00000492280 SPRR5A0A1B0GTR4 108 aa4.84□□□□□ -1.63
HMGN1-220ENST00000492280 KRTAP8-1Q8IUC2 63 aa4.84□□□□□ -1.63
HMGN1-220ENST00000492280 KRTAP12-3P60328 96 aa4.81□□□□□ -1.64
HMGN1-220ENST00000492280 PRO2289Q9P1D8 64 aa4.79□□□□□ -1.64
HMGN1-220ENST00000492280 SSPOA2VEC9 5147 aa4.75□□□□□ -1.65
HMGN1-220ENST00000492280 KRTAP4-8A0A0G2JLE6 195 aa4.75□□□□□ -1.65
HMGN1-220ENST00000492280 KRTAP4-8Q9BYQ9 185 aa4.75□□□□□ -1.65
HMGN1-220ENST00000492280 KRTAP19-5Q3LI72 72 aa4.7□□□□□ -1.66
HMGN1-220ENST00000492280 KRTAP9-2Q9BYQ4 174 aa4.65□□□□□ -1.67
HMGN1-220ENST00000492280 A0A0A0MQY5 61 aa4.57□□□□□ -1.68
HMGN1-220ENST00000492280 KRTAP4-7Q9BYR0 210 aa4.53□□□□□ -1.68
HMGN1-220ENST00000492280 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
HMGN1-220ENST00000492280 KRTAP4-6Q9BYQ5 205 aa4.52□□□□□ -1.69
HMGN1-220ENST00000492280 FCGBPQ9Y6R7 5405 aaPredicted RBP4.52□□□□□ -1.69
HMGN1-220ENST00000492280 MUC12Q9UKN1 5478 aa4.5□□□□□ -1.69
HMGN1-220ENST00000492280 KRTAP19-7Q3SYF9 63 aa4.5□□□□□ -1.69
HMGN1-220ENST00000492280 LCE3CQ5T5A8 94 aa4.49□□□□□ -1.69
HMGN1-220ENST00000492280 KRTAP9-6A8MVA2 160 aa4.44□□□□□ -1.7
HMGN1-220ENST00000492280 CRCT1Q9UGL9 99 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms