RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 MYH1P12882 1939 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 MYH8P13535 1937 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 PTPRDP23468 1912 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 MYH4Q9Y623 1939 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 USP34Q70CQ2 3546 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 A0A1B0GU69 56 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 A0A1B0GV72 72 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 CHKB-CPT1BH3BT56 60 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 H3BVH4 76 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 J3QR89 54 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 GNGT2O14610 69 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 S100A4P26447 101 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 SNRPD3P62318 126 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 DEFA5Q01523 94 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 SPAG11BQ08648 103 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 NEDD8Q15843 81 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 DEFB110Q30KQ9 67 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 C9orf153Q5TBE3 101 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 MYO7BQ6PIF6 2116 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 S100A7AQ86SG5 101 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 DEFB105AQ8NG35 78 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 COPS9Q8WXC6 57 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 SMIM3Q9BZL3 60 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 ASH1LQ9NR48 2969 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 GNG8Q9UK08 70 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 HILPDAQ9Y5L2 63 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 V9GYQ6 96 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 GOLGA4Q13439 2230 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 EYSQ5T1H1 3165 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 CSPG4Q6UVK1 2322 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 MGAM2Q2M2H8 2515 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 ANKRD17O75179 2603 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 FLNAP21333 2647 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 UNC79Q9P2D8 2635 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 AKAP12Q02952 1782 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 ANKRD31Q8N7Z5 1873 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 MYO5AQ9Y4I1 1855 aaKnown RBP-0.12□□□□□ -2.43
SMC4-219ENST00000487747 DOCK11Q5JSL3 2073 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 F8P00451 2351 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 PTPN13Q12923 2485 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 DOPEY1Q5JWR5 2465 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 MYO18BQ8IUG5 2567 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 SPTBN4Q9H254 2564 aa-0.12□□□□□ -2.43
SMC4-219ENST00000487747 DOCK2Q92608 1830 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 MYH3P11055 1940 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 MYH7P12883 1935 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 MYH6P13533 1939 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 JMJD1CQ15652 2540 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 VWFP04275 2813 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 MAP1AP78559 2803 aaPredicted RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 SPEGQ15772 3267 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 CHD7Q9P2D1 2997 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 TGP01266 2768 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 NBEAL1Q6ZS30 2694 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 NSD1Q96L73 2696 aaPredicted RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 ACACBO00763 2458 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 MAP1BP46821 2468 aaKnown RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 SPTBN1Q01082 2364 aaKnown RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 DOCK1Q14185 1865 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 PDCD11Q14690 1871 aaKnown RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 SNCGO76070 127 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 S100GP29377 79 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 S100A10P60903 97 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 HAMPP81172 84 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 LYRM7Q5U5X0 104 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 SMIM15Q7Z3B0 74 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 SPTSSBQ8NFR3 76 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 PRR15LQ9BU68 103 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 TOMM7Q9P0U1 55 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 MUC3AQ02505 3323 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 OTOGQ6ZRI0 2925 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 ASPMQ8IZT6 3477 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 VCANP13611 3396 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 DCHS1Q96JQ0 3298 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 COL6A3P12111 3177 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 A0A0C4DFX4 3053 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 FOCADQ5VW36 1801 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 ANKRD11Q6UB99 2663 aaPredicted RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 ABCA12Q86UK0 2595 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 USP9XQ93008 2570 aaPredicted RBP-0.13□□□□□ -2.43
SMC4-219ENST00000487747 CHD8Q9HCK8 2581 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 CCDC168Q8NDH2 2452 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 BRCA2P51587 3418 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 PCNTO95613 3336 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 SRCAPQ6ZRS2 3230 aa-0.13□□□□□ -2.43
SMC4-219ENST00000487747 ZNF292O60281 2723 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 HIVEP1P15822 2718 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 FLNCQ14315 2725 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 IGSF10Q6WRI0 2623 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 TEP1Q99973 2627 aaKnown RBP-0.14□□□□□ -2.43
SMC4-219ENST00000487747 TLN1Q9Y490 2541 aaKnown RBP-0.14□□□□□ -2.43
SMC4-219ENST00000487747 GVINP1Q7Z2Y8 2422 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 SPG11Q96JI7 2443 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 DSPP15924 2871 aaKnown RBP-0.14□□□□□ -2.43
SMC4-219ENST00000487747 USP9YO00507 2555 aaPredicted RBP-0.14□□□□□ -2.43
SMC4-219ENST00000487747 POLQO75417 2590 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 TCHHQ07283 1943 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 XIRP2A4UGR9 3374 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 APELAP0DMC3 54 aa-0.14□□□□□ -2.43
SMC4-219ENST00000487747 UBE2DNLQ8IWF7 75 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms