RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KRTAP3-1Q9BYR8 98 aa3.32□□□□□ -1.88
VPS13D-209ENST00000487188 PKHD1P08F94 4074 aa3.31□□□□□ -1.88
VPS13D-209ENST00000487188 DYNC1H1Q14204 4646 aaKnown RBP3.31□□□□□ -1.88
VPS13D-209ENST00000487188 A0A0A0MQY5 61 aa3.28□□□□□ -1.88
VPS13D-209ENST00000487188 RPS29P62273 56 aaKnown RBP3.28□□□□□ -1.88
VPS13D-209ENST00000487188 S4R3F8 94 aa3.27□□□□□ -1.89
VPS13D-209ENST00000487188 DNAH5Q8TE73 4624 aa3.27□□□□□ -1.89
VPS13D-209ENST00000487188 SMR3BP02814 79 aaPredicted RBP3.27□□□□□ -1.89
VPS13D-209ENST00000487188 KRTAP15-1Q3LI76 137 aa3.27□□□□□ -1.89
VPS13D-209ENST00000487188 KRTAP13-4Q3LI77 160 aa3.25□□□□□ -1.89
VPS13D-209ENST00000487188 HERC2O95714 4834 aa3.24□□□□□ -1.89
VPS13D-209ENST00000487188 LRP1BQ9NZR2 4599 aa3.24□□□□□ -1.89
VPS13D-209ENST00000487188 LUZP6Q538Z0 58 aa3.24□□□□□ -1.89
VPS13D-209ENST00000487188 HSPG2P98160 4391 aa3.23□□□□□ -1.89
VPS13D-209ENST00000487188 APOBP04114 4563 aaKnown RBP3.23□□□□□ -1.89
VPS13D-209ENST00000487188 KRTAP10-6P60371 365 aaPredicted RBP3.23□□□□□ -1.89
VPS13D-209ENST00000487188 A0A1B0GVY2 172 aa3.21□□□□□ -1.9
VPS13D-209ENST00000487188 KIAA1109Q2LD37 5005 aa3.2□□□□□ -1.9
VPS13D-209ENST00000487188 RYR1P21817 5038 aa3.2□□□□□ -1.9
VPS13D-209ENST00000487188 KRTAP12-2P59991 146 aa3.2□□□□□ -1.9
VPS13D-209ENST00000487188 KRTAP3-2Q9BYR7 98 aa3.17□□□□□ -1.9
VPS13D-209ENST00000487188 PCLOQ9Y6V0 5065 aa3.16□□□□□ -1.9
VPS13D-209ENST00000487188 VPS13BQ7Z7G8 4022 aa3.16□□□□□ -1.9
VPS13D-209ENST00000487188 KRTAP12-1P59990 96 aa3.15□□□□□ -1.9
VPS13D-209ENST00000487188 KRTAP17-1Q9BYP8 105 aa3.15□□□□□ -1.91
VPS13D-209ENST00000487188 KRTAP3-3Q9BYR6 98 aa3.15□□□□□ -1.91
VPS13D-209ENST00000487188 ABCA13Q86UQ4 5058 aa3.14□□□□□ -1.91
VPS13D-209ENST00000487188 M0QZ58 72 aa3.13□□□□□ -1.91
VPS13D-209ENST00000487188 XP32Q5T750 250 aa3.13□□□□□ -1.91
VPS13D-209ENST00000487188 Q5VSD8 79 aa3.13□□□□□ -1.91
VPS13D-209ENST00000487188 PLAC4Q8WY50 150 aa3.13□□□□□ -1.91
VPS13D-209ENST00000487188 FAT1Q14517 4588 aa3.12□□□□□ -1.91
VPS13D-209ENST00000487188 PKHD1L1Q86WI1 4243 aa3.11□□□□□ -1.91
VPS13D-209ENST00000487188 KRTAP10-8P60410 259 aa3.09□□□□□ -1.91
VPS13D-209ENST00000487188 R4GN34 69 aa3.09□□□□□ -1.91
VPS13D-209ENST00000487188 KRTAP4-5Q9BYR2 181 aa3.07□□□□□ -1.92
VPS13D-209ENST00000487188 FAT3Q8TDW7 4589 aa3.04□□□□□ -1.92
VPS13D-209ENST00000487188 MYCBP2O75592 4640 aa3.04□□□□□ -1.92
VPS13D-209ENST00000487188 CAMK2N1Q7Z7J9 78 aa3.02□□□□□ -1.93
VPS13D-209ENST00000487188 HERC1Q15751 4861 aa3.01□□□□□ -1.93
VPS13D-209ENST00000487188 LRP1Q07954 4544 aaKnown RBP3□□□□□ -1.93
VPS13D-209ENST00000487188 TNXBP22105 4242 aa3□□□□□ -1.93
VPS13D-209ENST00000487188 KRTAP10-4P60372 401 aaPredicted RBP2.99□□□□□ -1.93
VPS13D-209ENST00000487188 PP632Q6XCG6 107 aa2.98□□□□□ -1.93
VPS13D-209ENST00000487188 SEC61BP60468 96 aaKnown RBP2.93□□□□□ -1.94
VPS13D-209ENST00000487188 HMCN2Q8NDA2 5059 aa2.92□□□□□ -1.94
VPS13D-209ENST00000487188 M0R2T5 61 aa2.92□□□□□ -1.94
VPS13D-209ENST00000487188 MT1HL1P0DM35 61 aa2.87□□□□□ -1.95
VPS13D-209ENST00000487188 TNP1P09430 55 aa2.86□□□□□ -1.95
VPS13D-209ENST00000487188 LORP23490 312 aaPredicted RBP2.84□□□□□ -1.95
VPS13D-209ENST00000487188 UBR4Q5T4S7 5183 aa2.82□□□□□ -1.96
VPS13D-209ENST00000487188 LPAP08519 4548 aa2.81□□□□□ -1.96
VPS13D-209ENST00000487188 LRP2P98164 4655 aa2.8□□□□□ -1.96
VPS13D-209ENST00000487188 LCE2AQ5TA79 106 aaPredicted RBP2.77□□□□□ -1.97
VPS13D-209ENST00000487188 PRO2289Q9P1D8 64 aa2.77□□□□□ -1.97
VPS13D-209ENST00000487188 LCE2BO14633 110 aa2.76□□□□□ -1.97
VPS13D-209ENST00000487188 MUC17Q685J3 4493 aa2.75□□□□□ -1.97
VPS13D-209ENST00000487188 RNF213Q63HN8 5207 aa2.73□□□□□ -1.97
VPS13D-209ENST00000487188 KRTAP23-1A1A580 65 aa2.72□□□□□ -1.97
VPS13D-209ENST00000487188 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
VPS13D-209ENST00000487188 INE1O15225 51 aa2.7□□□□□ -1.98
VPS13D-209ENST00000487188 MUC2Q02817 5179 aa2.7□□□□□ -1.98
VPS13D-209ENST00000487188 KRTAP4-1Q9BYQ7 146 aa2.63□□□□□ -1.99
VPS13D-209ENST00000487188 LCE3AQ5TA76 89 aa2.61□□□□□ -1.99
VPS13D-209ENST00000487188 FAT4Q6V0I7 4981 aa2.6□□□□□ -1.99
VPS13D-209ENST00000487188 LCE2CQ5TA81 110 aa2.57□□□□□ -2
VPS13D-209ENST00000487188 FLGP20930 4061 aaPredicted RBP2.53□□□□□ -2
VPS13D-209ENST00000487188 KRTAP10-10P60014 251 aa2.53□□□□□ -2
VPS13D-209ENST00000487188 KRTAP19-2Q3LHN2 52 aa2.52□□□□□ -2.01
VPS13D-209ENST00000487188 KRTAP12-3P60328 96 aa2.49□□□□□ -2.01
VPS13D-209ENST00000487188 KRTAP8-1Q8IUC2 63 aa2.48□□□□□ -2.01
VPS13D-209ENST00000487188 SPRR2GQ9BYE4 73 aa2.47□□□□□ -2.01
VPS13D-209ENST00000487188 KRTAP10-12P60413 245 aa2.46□□□□□ -2.02
VPS13D-209ENST00000487188 KRTAP19-1Q8IUB9 90 aa2.44□□□□□ -2.02
VPS13D-209ENST00000487188 MT1HP80294 61 aa2.43□□□□□ -2.02
VPS13D-209ENST00000487188 KRTAP9-2Q9BYQ4 174 aa2.43□□□□□ -2.02
VPS13D-209ENST00000487188 LOC100996750A0A140TA64 210 aa2.41□□□□□ -2.02
VPS13D-209ENST00000487188 KRTAP4-6Q9BYQ5 205 aa2.41□□□□□ -2.02
VPS13D-209ENST00000487188 MT1FP04733 61 aa2.35□□□□□ -2.03
VPS13D-209ENST00000487188 MT2AP02795 61 aa2.34□□□□□ -2.03
VPS13D-209ENST00000487188 KRTAP10-5P60370 271 aa2.33□□□□□ -2.04
VPS13D-209ENST00000487188 MT1XP80297 61 aa2.33□□□□□ -2.04
VPS13D-209ENST00000487188 KRTAP9-6A0A140TA67 174 aa2.33□□□□□ -2.04
VPS13D-209ENST00000487188 KRTAP9-8Q9BYQ0 159 aa2.32□□□□□ -2.04
VPS13D-209ENST00000487188 KRTAP10-7P60409 375 aaPredicted RBP2.32□□□□□ -2.04
VPS13D-209ENST00000487188 LCE3CQ5T5A8 94 aa2.32□□□□□ -2.04
VPS13D-209ENST00000487188 KRTAP19-8Q3LI54 63 aa2.31□□□□□ -2.04
VPS13D-209ENST00000487188 FSIP2Q5CZC0 6907 aa2.3□□□□□ -2.04
VPS13D-209ENST00000487188 MT1BP07438 61 aa2.29□□□□□ -2.04
VPS13D-209ENST00000487188 KRTAP19-5Q3LI72 72 aa2.29□□□□□ -2.04
VPS13D-209ENST00000487188 USH2AO75445 5202 aa2.29□□□□□ -2.04
VPS13D-209ENST00000487188 CRCT1Q9UGL9 99 aa2.28□□□□□ -2.04
VPS13D-209ENST00000487188 SSPOA2VEC9 5147 aa2.27□□□□□ -2.05
VPS13D-209ENST00000487188 KRTAP9-3Q9BYQ3 159 aa2.25□□□□□ -2.05
VPS13D-209ENST00000487188 KRTAP4-12Q9BQ66 201 aa2.2□□□□□ -2.06
VPS13D-209ENST00000487188 KRTAP4-8Q9BYQ9 185 aa2.2□□□□□ -2.06
VPS13D-209ENST00000487188 FCGBPQ9Y6R7 5405 aaPredicted RBP2.19□□□□□ -2.06
VPS13D-209ENST00000487188 KRTAP9-6A8MVA2 160 aa2.17□□□□□ -2.06
VPS13D-209ENST00000487188 KRTAP2-3P0C7H8 128 aa2.17□□□□□ -2.06
VPS13D-209ENST00000487188 KRTAP2-4Q9BYR9 128 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms