RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 HIVEP3Q5T1R4 2406 aa0.42□□□□□ -2.34
SMC4-218ENST00000486711 PRKDCP78527 4128 aaKnown RBP0.42□□□□□ -2.34
SMC4-218ENST00000486711 PIEZO1Q92508 2521 aa0.42□□□□□ -2.34
SMC4-218ENST00000486711 ALMS1Q8TCU4 4167 aa0.42□□□□□ -2.34
SMC4-218ENST00000486711 MAP1AP78559 2803 aaPredicted RBP0.42□□□□□ -2.34
SMC4-218ENST00000486711 CEP295Q9C0D2 2601 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 DOPEY1Q5JWR5 2465 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 RIF1Q5UIP0 2472 aaKnown RBP0.41□□□□□ -2.34
SMC4-218ENST00000486711 NAV2Q8IVL1 2488 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 ANK3Q12955 4377 aaKnown RBP0.41□□□□□ -2.34
SMC4-218ENST00000486711 GVINP1Q7Z2Y8 2422 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 CELSR2Q9HCU4 2923 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 LRRK2Q5S007 2527 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 AKAP13Q12802 2813 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 DCHS2Q6V1P9 2916 aa0.41□□□□□ -2.34
SMC4-218ENST00000486711 SPG11Q96JI7 2443 aa0.4□□□□□ -2.34
SMC4-218ENST00000486711 MYO9AB2RTY4 2548 aa0.4□□□□□ -2.34
SMC4-218ENST00000486711 TLN2Q9Y4G6 2542 aa0.4□□□□□ -2.34
SMC4-218ENST00000486711 PKHD1P08F94 4074 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 NCOR2Q9Y618 2525 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 DNAH10Q8IVF4 4471 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 DNAH1Q9P2D7 4330 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 KMT2AQ03164 3969 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 ACACBO00763 2458 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 ANKRD11Q6UB99 2663 aaPredicted RBP0.4□□□□□ -2.35
SMC4-218ENST00000486711 UTP20O75691 2785 aaKnown RBP0.4□□□□□ -2.35
SMC4-218ENST00000486711 ITPR1Q14643 2758 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 TEX15Q9BXT5 2789 aa0.4□□□□□ -2.35
SMC4-218ENST00000486711 TLN1Q9Y490 2541 aaKnown RBP0.39□□□□□ -2.35
SMC4-218ENST00000486711 CHD6Q8TD26 2715 aa0.39□□□□□ -2.35
SMC4-218ENST00000486711 DYNC2H1Q8NCM8 4307 aaKnown RBP0.39□□□□□ -2.35
SMC4-218ENST00000486711 DNAH11Q96DT5 4516 aa0.39□□□□□ -2.35
SMC4-218ENST00000486711 PKD1L2Q7Z442 2459 aa0.39□□□□□ -2.35
SMC4-218ENST00000486711 CHD8Q9HCK8 2581 aa0.39□□□□□ -2.35
SMC4-218ENST00000486711 SONP18583 2426 aaKnown RBP0.39□□□□□ -2.35
SMC4-218ENST00000486711 FAM208BQ5VWN6 2430 aa0.39□□□□□ -2.35
SMC4-218ENST00000486711 UBR5O95071 2799 aaPredicted RBP0.39□□□□□ -2.35
SMC4-218ENST00000486711 PLECQ15149 4684 aaKnown RBP0.38□□□□□ -2.35
SMC4-218ENST00000486711 ZNF292O60281 2723 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 MXRA5Q9NR99 2828 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 NSD1Q96L73 2696 aaPredicted RBP0.38□□□□□ -2.35
SMC4-218ENST00000486711 SPTBN4Q9H254 2564 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 M0R2T5 61 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 DNAH8Q96JB1 4490 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 DNAH9Q9NYC9 4486 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 ACANP16112 2415 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 DNAH2Q9P225 4427 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 TENM2Q9NT68 2774 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 ABCA12Q86UK0 2595 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 USP9XQ93008 2570 aaPredicted RBP0.38□□□□□ -2.35
SMC4-218ENST00000486711 DNAH17Q9UFH2 4485 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 PTPN13Q12923 2485 aa0.38□□□□□ -2.35
SMC4-218ENST00000486711 HUWE1Q7Z6Z7 4374 aaKnown RBP0.38□□□□□ -2.35
SMC4-218ENST00000486711 FLGP20930 4061 aaPredicted RBP0.38□□□□□ -2.35
SMC4-218ENST00000486711 PKD1P98161 4303 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 CACNA1AO00555 2505 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 NBEAL1Q6ZS30 2694 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 TTC28Q96AY4 2481 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 NF1P21359 2839 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 NIPBLQ6KC79 2804 aaeCLIP0.37□□□□□ -2.356e-6■□□□□ 9
SMC4-218ENST00000486711 STARD9Q9P2P6 4700 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 BDP1A6H8Y1 2624 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 TENM4Q6N022 2769 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 ITPR3Q14573 2671 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 USP9YO00507 2555 aaPredicted RBP0.37□□□□□ -2.35
SMC4-218ENST00000486711 MYO18BQ8IUG5 2567 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 PKHD1L1Q86WI1 4243 aa0.37□□□□□ -2.35
SMC4-218ENST00000486711 ITPR2Q14571 2701 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 TEP1Q99973 2627 aaKnown RBP0.36□□□□□ -2.35
SMC4-218ENST00000486711 HRNRQ86YZ3 2850 aaPredicted RBP0.36□□□□□ -2.35
SMC4-218ENST00000486711 JMJD1CQ15652 2540 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 PKD1L1Q8TDX9 2849 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 HYDINQ4G0P3 5121 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 IGF2RP11717 2491 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 DNHD1Q96M86 4753 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 HIVEP1P15822 2718 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 CFAP46Q8IYW2 2715 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 COL6A5A8TX70 2615 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 FLNAP21333 2647 aaKnown RBP0.36□□□□□ -2.35
SMC4-218ENST00000486711 UNC79Q9P2D8 2635 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 MTORP42345 2549 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 FASNP49327 2511 aaKnown RBP0.36□□□□□ -2.35
SMC4-218ENST00000486711 DNAH5Q8TE73 4624 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 RYR1P21817 5038 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 GCN1Q92616 2671 aaKnown RBP0.36□□□□□ -2.35
SMC4-218ENST00000486711 COL7A1Q02388 2944 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 SACSQ9NZJ4 4579 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 VWFP04275 2813 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 CCDC168Q8NDH2 2452 aa0.36□□□□□ -2.35
SMC4-218ENST00000486711 NBEAL2Q6ZNJ1 2754 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 FAT2Q9NYQ8 4349 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 ZFYVE26Q68DK2 2539 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 DMBT1Q9UGM3 2413 aaPredicted RBP0.35□□□□□ -2.35
SMC4-218ENST00000486711 PDZD2O15018 2839 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 POLQO75417 2590 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 SMR3BP02814 79 aaPredicted RBP0.35□□□□□ -2.35
SMC4-218ENST00000486711 OTOGQ6ZRI0 2925 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 APOBP04114 4563 aaKnown RBP0.35□□□□□ -2.35
SMC4-218ENST00000486711 TNXBP22105 4242 aa0.35□□□□□ -2.35
SMC4-218ENST00000486711 MYCBP2O75592 4640 aa0.34□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms