RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 AEBP2Q6ZN18 517 aaPredicted RBP28.56■■■□□ 2.16
SMC4-218ENST00000486711 CHIC1Q5VXU3 224 aa27.41■■□□□ 1.98
SMC4-218ENST00000486711 SENP3Q9H4L4 574 aaPredicted RBP24.4■■□□□ 1.5
SMC4-218ENST00000486711 PHF23Q9BUL5 403 aaPredicted RBP24.08■■□□□ 1.45
SMC4-218ENST00000486711 FOXD1Q16676 465 aa22.66■■□□□ 1.22
SMC4-218ENST00000486711 PLPPR3Q6T4P5 718 aa22.05■■□□□ 1.12
SMC4-218ENST00000486711 PPP6R1Q9UPN7 881 aa21.34■■□□□ 1.01
SMC4-218ENST00000486711 ADRA2BP18089 450 aa21.3■■□□□ 1
SMC4-218ENST00000486711 PIAS4Q8N2W9 510 aaPredicted RBP21.27■■□□□ 1
SMC4-218ENST00000486711 MSH5O43196 834 aa21.18■□□□□ 0.98
SMC4-218ENST00000486711 POTEDQ86YR6 584 aa20.19■□□□□ 0.82
SMC4-218ENST00000486711 SCAF1Q9H7N4 1312 aaKnown RBP19.58■□□□□ 0.73
SMC4-218ENST00000486711 MAPK8IP2Q13387 824 aaPredicted RBP19.47■□□□□ 0.71
SMC4-218ENST00000486711 DMRT2Q9Y5R5 561 aa19.37■□□□□ 0.69
SMC4-218ENST00000486711 PPP4R3CPQ6ZMV5 832 aa19.33■□□□□ 0.68
SMC4-218ENST00000486711 CNKSR2Q8WXI2 1034 aa18.93■□□□□ 0.62
SMC4-218ENST00000486711 HOXD11P31277 338 aaPredicted RBP18.76■□□□□ 0.59
SMC4-218ENST00000486711 NCBP3Q53F19 620 aaKnown RBP18.71■□□□□ 0.59
SMC4-218ENST00000486711 RNF216Q9NWF9 866 aaPredicted RBP18.69■□□□□ 0.58
SMC4-218ENST00000486711 DCAF8L1A6NGE4 600 aa18.56■□□□□ 0.56
SMC4-218ENST00000486711 NPM3O75607 178 aaKnown RBP18.38■□□□□ 0.53
SMC4-218ENST00000486711 KCNA4P22459 653 aa18.23■□□□□ 0.51
SMC4-218ENST00000486711 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
SMC4-218ENST00000486711 RNF39Q9H2S5 420 aa18.06■□□□□ 0.48
SMC4-218ENST00000486711 CACNB1Q02641 598 aaPredicted RBP18■□□□□ 0.47
SMC4-218ENST00000486711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.88■□□□□ 0.45
SMC4-218ENST00000486711 C1QBPQ07021 282 aaKnown RBP17.84■□□□□ 0.45
SMC4-218ENST00000486711 U3KPZ7 1027 aaPredicted RBP17.51■□□□□ 0.39
SMC4-218ENST00000486711 SLC4A2P04920 1241 aa17.47■□□□□ 0.39
SMC4-218ENST00000486711 SLC4A1APQ9BWU0 796 aaKnown RBP17.3■□□□□ 0.36
SMC4-218ENST00000486711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.18■□□□□ 0.34
SMC4-218ENST00000486711 HNRNPUL2Q1KMD3 747 aaKnown RBP17.18■□□□□ 0.34
SMC4-218ENST00000486711 CAPN15O75808 1086 aa17.16■□□□□ 0.34
SMC4-218ENST00000486711 SPINK5Q9NQ38 1064 aaPredicted RBP17.16■□□□□ 0.34
SMC4-218ENST00000486711 APLP2Q06481 763 aa17.15■□□□□ 0.34
SMC4-218ENST00000486711 SAMD1Q6SPF0 538 aaPredicted RBP17.07■□□□□ 0.32
SMC4-218ENST00000486711 MYCNP04198 464 aaPredicted RBP17.04■□□□□ 0.32
SMC4-218ENST00000486711 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
SMC4-218ENST00000486711 DSG3P32926 999 aa16.98■□□□□ 0.31
SMC4-218ENST00000486711 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
SMC4-218ENST00000486711 TRHP20396 242 aaPredicted RBP16.94■□□□□ 0.3
SMC4-218ENST00000486711 ABCB7O75027 752 aa16.76■□□□□ 0.27
SMC4-218ENST00000486711 ZBTB22O15209 634 aa16.74■□□□□ 0.27
SMC4-218ENST00000486711 ATF5Q9Y2D1 282 aaPredicted RBP16.54■□□□□ 0.24
SMC4-218ENST00000486711 POLA2Q14181 598 aa16.53■□□□□ 0.24
SMC4-218ENST00000486711 ATXN8OSP0DMR3 200 aa16.46■□□□□ 0.23
SMC4-218ENST00000486711 ZBTB12Q9Y330 459 aaPredicted RBP16.29■□□□□ 0.2
SMC4-218ENST00000486711 RBM42Q9BTD8 480 aaKnown RBP16.27■□□□□ 0.2
SMC4-218ENST00000486711 CSRNP3Q8WYN3 585 aa16.21■□□□□ 0.19
SMC4-218ENST00000486711 EHMT2Q96KQ7 1210 aa16.15■□□□□ 0.18
SMC4-218ENST00000486711 OSCARQ8IYS5 282 aa16■□□□□ 0.15
SMC4-218ENST00000486711 FBLN2P98095 1184 aa15.98■□□□□ 0.15
SMC4-218ENST00000486711 AKT1S1Q96B36 256 aa15.92■□□□□ 0.14
SMC4-218ENST00000486711 POTEHQ6S545 545 aa15.89■□□□□ 0.13
SMC4-218ENST00000486711 MKRN4PQ13434 485 aaPredicted RBP15.81■□□□□ 0.12
SMC4-218ENST00000486711 SPDYE2BA6NHP3 402 aa15.78■□□□□ 0.12
SMC4-218ENST00000486711 SPDYE6P0CI01 402 aa15.78■□□□□ 0.12
SMC4-218ENST00000486711 SPDYE2Q495Y8 402 aa15.78■□□□□ 0.12
SMC4-218ENST00000486711 CHRDL2Q6WN34 429 aa15.76■□□□□ 0.11
SMC4-218ENST00000486711 REM2Q8IYK8 340 aaPredicted RBP15.74■□□□□ 0.11
SMC4-218ENST00000486711 ZNF692Q9BU19 519 aaPredicted RBP15.61■□□□□ 0.09
SMC4-218ENST00000486711 PITPNM1O00562 1244 aa15.57■□□□□ 0.08
SMC4-218ENST00000486711 SSUH2Q9Y2M2 353 aa15.57■□□□□ 0.08
SMC4-218ENST00000486711 SPDYE1Q8NFV5 336 aaPredicted RBP15.45■□□□□ 0.06
SMC4-218ENST00000486711 PIP4P2Q8N4L2 257 aa15.43■□□□□ 0.06
SMC4-218ENST00000486711 FXR2P51116 673 aaKnown RBP eCLIP15.38■□□□□ 0.05
SMC4-218ENST00000486711 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
SMC4-218ENST00000486711 CLEC11AQ9Y240 323 aa15.38■□□□□ 0.05
SMC4-218ENST00000486711 SPDYE4A6NLX3 237 aa15.24■□□□□ 0.03
SMC4-218ENST00000486711 PRKAR2AP13861 404 aaKnown RBP15.18■□□□□ 0.02
SMC4-218ENST00000486711 PRR29P0C7W0 189 aa15.17■□□□□ 0.02
SMC4-218ENST00000486711 HAX1O00165 279 aa15.09■□□□□ 0.01
SMC4-218ENST00000486711 STAG3Q9UJ98 1225 aa15.06■□□□□ 0
SMC4-218ENST00000486711 CHADLQ6NUI6 762 aa15.03■□□□□ -0
SMC4-218ENST00000486711 SP7Q8TDD2 431 aaPredicted RBP15.02■□□□□ -0
SMC4-218ENST00000486711 PROM2Q8N271 834 aa14.89□□□□□ -0.03
SMC4-218ENST00000486711 C19orf67A6NJJ6 358 aa14.88□□□□□ -0.03
SMC4-218ENST00000486711 EVX2Q03828 476 aa14.86□□□□□ -0.03
SMC4-218ENST00000486711 FARP1Q9Y4F1 1045 aaPredicted RBP14.86□□□□□ -0.03
SMC4-218ENST00000486711 CREBZFQ9NS37 354 aa14.83□□□□□ -0.04
SMC4-218ENST00000486711 CD44P16070 742 aaKnown RBP14.72□□□□□ -0.05
SMC4-218ENST00000486711 FKBP8Q14318 412 aa14.72□□□□□ -0.05
SMC4-218ENST00000486711 NPM1P06748 294 aaKnown RBP eCLIP14.62□□□□□ -0.07
SMC4-218ENST00000486711 GABBR2O75899 941 aa14.59□□□□□ -0.07
SMC4-218ENST00000486711 MNX1P50219 401 aaPredicted RBP14.59□□□□□ -0.07
SMC4-218ENST00000486711 ZRANB1Q9UGI0 708 aa14.55□□□□□ -0.08
SMC4-218ENST00000486711 PAK3O75914 559 aaPredicted RBP14.54□□□□□ -0.08
SMC4-218ENST00000486711 PLEKHG5O94827 1062 aa14.54□□□□□ -0.08
SMC4-218ENST00000486711 CLCN6P51797 869 aa14.53□□□□□ -0.08
SMC4-218ENST00000486711 ZNF579Q8NAF0 562 aaKnown RBP14.51□□□□□ -0.09
SMC4-218ENST00000486711 MIER1Q8N108 512 aa14.5□□□□□ -0.09
SMC4-218ENST00000486711 PLCD3Q8N3E9 789 aa14.44□□□□□ -0.1
SMC4-218ENST00000486711 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
SMC4-218ENST00000486711 ZBTB47Q9UFB7 747 aaPredicted RBP14.36□□□□□ -0.11
SMC4-218ENST00000486711 PHF12Q96QT6 1004 aa14.34□□□□□ -0.11
SMC4-218ENST00000486711 TSPYL2Q9H2G4 693 aaPredicted RBP14.31□□□□□ -0.12
SMC4-218ENST00000486711 DCBLD2Q96PD2 775 aa14.29□□□□□ -0.12
SMC4-218ENST00000486711 GALR2O43603 387 aaPredicted RBP14.28□□□□□ -0.12
SMC4-218ENST00000486711 POTEIP0CG38 1075 aa14.26□□□□□ -0.13
SMC4-218ENST00000486711 RASEFQ8IZ41 740 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 646.5 ms