RNA–Protein interactions for RNA: ENST00000479866.5

RAPGEF3-209, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 3,917 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-209ENST00000479866 VPS13BQ7Z7G8 4022 aa6.33□□□□□ -1.4
RAPGEF3-209ENST00000479866 RYR3Q15413 4870 aa6.32□□□□□ -1.4
RAPGEF3-209ENST00000479866 KRTAP10-4P60372 401 aaPredicted RBP6.31□□□□□ -1.4
RAPGEF3-209ENST00000479866 C10orf95Q9H7T3 257 aa6.3□□□□□ -1.4
RAPGEF3-209ENST00000479866 RPS29P62273 56 aaKnown RBP6.29□□□□□ -1.4
RAPGEF3-209ENST00000479866 APOBP04114 4563 aaKnown RBP6.27□□□□□ -1.41
RAPGEF3-209ENST00000479866 KRTAP4-5Q9BYR2 181 aa6.27□□□□□ -1.41
RAPGEF3-209ENST00000479866 KRTAP10-8P60410 259 aa6.26□□□□□ -1.41
RAPGEF3-209ENST00000479866 PKD1P98161 4303 aa6.25□□□□□ -1.41
RAPGEF3-209ENST00000479866 RYR1P21817 5038 aa6.21□□□□□ -1.41
RAPGEF3-209ENST00000479866 LRP1Q07954 4544 aaKnown RBP6.2□□□□□ -1.42
RAPGEF3-209ENST00000479866 KRTAP17-1Q9BYP8 105 aa6.17□□□□□ -1.42
RAPGEF3-209ENST00000479866 CAMK2N1Q7Z7J9 78 aa6.15□□□□□ -1.43
RAPGEF3-209ENST00000479866 H0YAA0 97 aa6.14□□□□□ -1.43
RAPGEF3-209ENST00000479866 EPPK1P58107 5090 aaKnown RBP6.13□□□□□ -1.43
RAPGEF3-209ENST00000479866 MT1HL1P0DM35 61 aa6.13□□□□□ -1.43
RAPGEF3-209ENST00000479866 XP32Q5T750 250 aa6.13□□□□□ -1.43
RAPGEF3-209ENST00000479866 MYCBP2O75592 4640 aa6.12□□□□□ -1.43
RAPGEF3-209ENST00000479866 COX6B2Q6YFQ2 88 aa6.11□□□□□ -1.43
RAPGEF3-209ENST00000479866 RPL37P61927 97 aaKnown RBP6.1□□□□□ -1.43
RAPGEF3-209ENST00000479866 H1FX-AS1Q4G0G2 97 aa6.09□□□□□ -1.43
RAPGEF3-209ENST00000479866 KRTAP15-1Q3LI76 137 aa6.08□□□□□ -1.44
RAPGEF3-209ENST00000479866 KRTAP13-3Q3SY46 172 aa6.08□□□□□ -1.44
RAPGEF3-209ENST00000479866 HSPG2P98160 4391 aa6.07□□□□□ -1.44
RAPGEF3-209ENST00000479866 FAT3Q8TDW7 4589 aa6.06□□□□□ -1.44
RAPGEF3-209ENST00000479866 TPRXLQ17RH7 258 aa6.05□□□□□ -1.44
RAPGEF3-209ENST00000479866 HERC2O95714 4834 aa5.95□□□□□ -1.46
RAPGEF3-209ENST00000479866 S4R3F8 94 aa5.93□□□□□ -1.46
RAPGEF3-209ENST00000479866 PLAC4Q8WY50 150 aa5.88□□□□□ -1.47
RAPGEF3-209ENST00000479866 BIRC6Q9NR09 4857 aa5.85□□□□□ -1.47
RAPGEF3-209ENST00000479866 M0R2T5 61 aa5.84□□□□□ -1.47
RAPGEF3-209ENST00000479866 ABCA13Q86UQ4 5058 aa5.84□□□□□ -1.47
RAPGEF3-209ENST00000479866 PKHD1L1Q86WI1 4243 aa5.82□□□□□ -1.48
RAPGEF3-209ENST00000479866 KRTAP3-1Q9BYR8 98 aa5.81□□□□□ -1.48
RAPGEF3-209ENST00000479866 LRP2P98164 4655 aa5.81□□□□□ -1.48
RAPGEF3-209ENST00000479866 R4GN34 69 aa5.78□□□□□ -1.48
RAPGEF3-209ENST00000479866 LPAP08519 4548 aa5.74□□□□□ -1.49
RAPGEF3-209ENST00000479866 TNXBP22105 4242 aa5.73□□□□□ -1.49
RAPGEF3-209ENST00000479866 HERC1Q15751 4861 aa5.64□□□□□ -1.51
RAPGEF3-209ENST00000479866 M0QZ58 72 aa5.63□□□□□ -1.51
RAPGEF3-209ENST00000479866 KRTAP4-1Q9BYQ7 146 aa5.61□□□□□ -1.51
RAPGEF3-209ENST00000479866 PCLOQ9Y6V0 5065 aa5.57□□□□□ -1.52
RAPGEF3-209ENST00000479866 PRO2289Q9P1D8 64 aa5.55□□□□□ -1.52
RAPGEF3-209ENST00000479866 KRTAP3-3Q9BYR6 98 aa5.54□□□□□ -1.52
RAPGEF3-209ENST00000479866 MUC2Q02817 5179 aa5.48□□□□□ -1.53
RAPGEF3-209ENST00000479866 KRTAP12-2P59991 146 aa5.48□□□□□ -1.53
RAPGEF3-209ENST00000479866 KRTAP13-4Q3LI77 160 aa5.44□□□□□ -1.54
RAPGEF3-209ENST00000479866 KRTAP10-6P60371 365 aaPredicted RBP5.43□□□□□ -1.54
RAPGEF3-209ENST00000479866 RNF213Q63HN8 5207 aa5.41□□□□□ -1.54
RAPGEF3-209ENST00000479866 KRTAP10-10P60014 251 aa5.39□□□□□ -1.55
RAPGEF3-209ENST00000479866 UBR4Q5T4S7 5183 aa5.38□□□□□ -1.55
RAPGEF3-209ENST00000479866 KRTAP3-2Q9BYR7 98 aa5.38□□□□□ -1.55
RAPGEF3-209ENST00000479866 HMCN2Q8NDA2 5059 aa5.34□□□□□ -1.56
RAPGEF3-209ENST00000479866 LORP23490 312 aaPredicted RBP5.3□□□□□ -1.56
RAPGEF3-209ENST00000479866 KRTAP12-1P59990 96 aa5.29□□□□□ -1.56
RAPGEF3-209ENST00000479866 FAT4Q6V0I7 4981 aa5.29□□□□□ -1.56
RAPGEF3-209ENST00000479866 KRTAP23-1A1A580 65 aa5.28□□□□□ -1.56
RAPGEF3-209ENST00000479866 PP632Q6XCG6 107 aa5.25□□□□□ -1.57
RAPGEF3-209ENST00000479866 INE1O15225 51 aa5.21□□□□□ -1.58
RAPGEF3-209ENST00000479866 MT1HP80294 61 aa5.19□□□□□ -1.58
RAPGEF3-209ENST00000479866 MUC17Q685J3 4493 aa5.14□□□□□ -1.59
RAPGEF3-209ENST00000479866 KRTAP19-2Q3LHN2 52 aa5.12□□□□□ -1.59
RAPGEF3-209ENST00000479866 LCE2CQ5TA81 110 aa5.12□□□□□ -1.59
RAPGEF3-209ENST00000479866 FLGP20930 4061 aaPredicted RBP5.04□□□□□ -1.6
RAPGEF3-209ENST00000479866 MT2AP02795 61 aa5.04□□□□□ -1.6
RAPGEF3-209ENST00000479866 MT1FP04733 61 aa5.03□□□□□ -1.6
RAPGEF3-209ENST00000479866 TNP1P09430 55 aa5□□□□□ -1.61
RAPGEF3-209ENST00000479866 FSIP2Q5CZC0 6907 aa4.92□□□□□ -1.62
RAPGEF3-209ENST00000479866 KRTAP9-8Q9BYQ0 159 aa4.91□□□□□ -1.62
RAPGEF3-209ENST00000479866 KRTAP19-1Q8IUB9 90 aa4.87□□□□□ -1.63
RAPGEF3-209ENST00000479866 SPRR2GQ9BYE4 73 aa4.85□□□□□ -1.63
RAPGEF3-209ENST00000479866 KRTAP9-3Q9BYQ3 159 aa4.72□□□□□ -1.65
RAPGEF3-209ENST00000479866 LCE2AQ5TA79 106 aaPredicted RBP4.7□□□□□ -1.66
RAPGEF3-209ENST00000479866 USH2AO75445 5202 aa4.69□□□□□ -1.66
RAPGEF3-209ENST00000479866 MT1BP07438 61 aa4.68□□□□□ -1.66
RAPGEF3-209ENST00000479866 KRTAP19-8Q3LI54 63 aa4.65□□□□□ -1.66
RAPGEF3-209ENST00000479866 LCE2BO14633 110 aa4.65□□□□□ -1.67
RAPGEF3-209ENST00000479866 KRTAP10-12P60413 245 aa4.62□□□□□ -1.67
RAPGEF3-209ENST00000479866 LCE3AQ5TA76 89 aa4.62□□□□□ -1.67
RAPGEF3-209ENST00000479866 MT1XP80297 61 aa4.57□□□□□ -1.68
RAPGEF3-209ENST00000479866 KRTAP10-5P60370 271 aa4.55□□□□□ -1.68
RAPGEF3-209ENST00000479866 KRTAP10-7P60409 375 aaPredicted RBP4.53□□□□□ -1.69
RAPGEF3-209ENST00000479866 SPRR5A0A1B0GTR4 108 aa4.49□□□□□ -1.69
RAPGEF3-209ENST00000479866 KRTAP12-3P60328 96 aa4.46□□□□□ -1.7
RAPGEF3-209ENST00000479866 KRTAP4-8A0A0G2JLE6 195 aa4.42□□□□□ -1.7
RAPGEF3-209ENST00000479866 KRTAP4-8Q9BYQ9 185 aa4.42□□□□□ -1.7
RAPGEF3-209ENST00000479866 KMT2DO14686 5537 aa4.38□□□□□ -1.71
RAPGEF3-209ENST00000479866 KRTAP8-1Q8IUC2 63 aa4.36□□□□□ -1.71
RAPGEF3-209ENST00000479866 KRTAP19-5Q3LI72 72 aa4.34□□□□□ -1.72
RAPGEF3-209ENST00000479866 SSPOA2VEC9 5147 aa4.31□□□□□ -1.72
RAPGEF3-209ENST00000479866 KRTAP9-2Q9BYQ4 174 aa4.29□□□□□ -1.72
RAPGEF3-209ENST00000479866 KRTAP19-6Q3LI70 58 aa4.22□□□□□ -1.73
RAPGEF3-209ENST00000479866 SPRR2FQ96RM1 72 aa4.21□□□□□ -1.73
RAPGEF3-209ENST00000479866 LCE2DQ5TA82 110 aaPredicted RBP4.2□□□□□ -1.74
RAPGEF3-209ENST00000479866 CRCT1Q9UGL9 99 aa4.19□□□□□ -1.74
RAPGEF3-209ENST00000479866 FCGBPQ9Y6R7 5405 aaPredicted RBP4.16□□□□□ -1.74
RAPGEF3-209ENST00000479866 DSTQ03001 7570 aaKnown RBP4.08□□□□□ -1.76
RAPGEF3-209ENST00000479866 KRTAP4-7Q9BYR0 210 aa4.08□□□□□ -1.76
RAPGEF3-209ENST00000479866 MACF1Q9UPN3 7388 aaKnown RBP4.08□□□□□ -1.76
RAPGEF3-209ENST00000479866 MUC12Q9UKN1 5478 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms