RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 LCE4AQ5TA78 99 aa3.78□□□□□ -1.8
VCP-205ENST00000479300 CASC2Q6XLA1 102 aa3.78□□□□□ -1.8
VCP-205ENST00000479300 KRTAP4-8Q9BYQ9 185 aa3.77□□□□□ -1.81
VCP-205ENST00000479300 KRTAP9-7A8MTY7 169 aa3.76□□□□□ -1.81
VCP-205ENST00000479300 RPS29P62273 56 aaKnown RBP3.76□□□□□ -1.81
VCP-205ENST00000479300 DEFB105AQ8NG35 78 aa3.76□□□□□ -1.81
VCP-205ENST00000479300 IGLV8-61A0A075B6I0 122 aa3.75□□□□□ -1.81
VCP-205ENST00000479300 WFDC13Q8IUB5 93 aa3.75□□□□□ -1.81
VCP-205ENST00000479300 SEC61BP60468 96 aaKnown RBP3.74□□□□□ -1.81
VCP-205ENST00000479300 KRTAP19-2Q3LHN2 52 aa3.74□□□□□ -1.81
VCP-205ENST00000479300 KRTAP13-3Q3SY46 172 aa3.73□□□□□ -1.81
VCP-205ENST00000479300 LINC01554Q52M75 96 aa3.73□□□□□ -1.81
VCP-205ENST00000479300 LINC00313P59037 77 aa3.72□□□□□ -1.81
VCP-205ENST00000479300 TP53AIP1Q9HCN2 124 aa3.72□□□□□ -1.81
VCP-205ENST00000479300 A8MWP4 228 aa3.71□□□□□ -1.82
VCP-205ENST00000479300 SPRR1BP22528 89 aa3.71□□□□□ -1.82
VCP-205ENST00000479300 SPINK7P58062 85 aa3.71□□□□□ -1.82
VCP-205ENST00000479300 IGFL1Q6UW32 110 aa3.71□□□□□ -1.82
VCP-205ENST00000479300 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.7□□□□□ -1.82
VCP-205ENST00000479300 MT1HP80294 61 aa3.7□□□□□ -1.82
VCP-205ENST00000479300 A0A087WSZ3 146 aa3.68□□□□□ -1.82
VCP-205ENST00000479300 DEFB116Q30KQ4 102 aa3.68□□□□□ -1.82
VCP-205ENST00000479300 MMP24-AS1A0A0U1RRL7 71 aa3.67□□□□□ -1.82
VCP-205ENST00000479300 LINC00472Q9H8W2 130 aa3.67□□□□□ -1.82
VCP-205ENST00000479300 HRES1P13985 223 aa3.66□□□□□ -1.82
VCP-205ENST00000479300 KRTAP10-6P60371 365 aaPredicted RBP3.66□□□□□ -1.82
VCP-205ENST00000479300 C9orf92A6NGG3 77 aa3.65□□□□□ -1.83
VCP-205ENST00000479300 PRAC1Q96KF2 57 aa3.65□□□□□ -1.83
VCP-205ENST00000479300 PCOTHQ58A44 107 aa3.64□□□□□ -1.83
VCP-205ENST00000479300 SPATA8Q6RVD6 105 aa3.64□□□□□ -1.83
VCP-205ENST00000479300 KRTAP9-9Q9BYP9 154 aa3.64□□□□□ -1.83
VCP-205ENST00000479300 KRTAP9-4Q9BYQ2 154 aa3.64□□□□□ -1.83
VCP-205ENST00000479300 FLGP20930 4061 aaPredicted RBP3.61□□□□□ -1.83
VCP-205ENST00000479300 ACYP2P14621 99 aa3.6□□□□□ -1.83
VCP-205ENST00000479300 C8orf17Q9NRJ1 99 aa3.6□□□□□ -1.83
VCP-205ENST00000479300 SSPOA2VEC9 5147 aa3.6□□□□□ -1.83
VCP-205ENST00000479300 USH2AO75445 5202 aa3.59□□□□□ -1.83
VCP-205ENST00000479300 ADM2Q7Z4H4 148 aa3.59□□□□□ -1.83
VCP-205ENST00000479300 A0A0G2JQZ4 141 aa3.58□□□□□ -1.84
VCP-205ENST00000479300 LCE3BQ5TA77 95 aa3.58□□□□□ -1.84
VCP-205ENST00000479300 UQCR11O14957 56 aa3.57□□□□□ -1.84
VCP-205ENST00000479300 KRTAP15-1Q3LI76 137 aa3.57□□□□□ -1.84
VCP-205ENST00000479300 COX6B2Q6YFQ2 88 aa3.57□□□□□ -1.84
VCP-205ENST00000479300 MRPL34Q9BQ48 92 aaKnown RBP3.57□□□□□ -1.84
VCP-205ENST00000479300 A0A1B0GU69 56 aa3.56□□□□□ -1.84
VCP-205ENST00000479300 A0A1B0GVX0 72 aa3.56□□□□□ -1.84
VCP-205ENST00000479300 RPL37P61927 97 aaKnown RBP3.56□□□□□ -1.84
VCP-205ENST00000479300 MIR22HGQ0VDD5 57 aa3.56□□□□□ -1.84
VCP-205ENST00000479300 DMAC1Q96GE9 116 aa3.56□□□□□ -1.84
VCP-205ENST00000479300 Q96NJ1 140 aa3.56□□□□□ -1.84
VCP-205ENST00000479300 KRTAP9-3Q9BYQ3 159 aa3.56□□□□□ -1.84
VCP-205ENST00000479300 FCGBPQ9Y6R7 5405 aaPredicted RBP3.55□□□□□ -1.84
VCP-205ENST00000479300 CSAG1Q6PB30 78 aa3.55□□□□□ -1.84
VCP-205ENST00000479300 M0R2T5 61 aa3.54□□□□□ -1.84
VCP-205ENST00000479300 IGHV6-1A0A0B4J1U7 121 aa3.51□□□□□ -1.85
VCP-205ENST00000479300 KRTAP9-8Q9BYQ0 159 aa3.48□□□□□ -1.85
VCP-205ENST00000479300 ROMO1P60602 79 aa3.47□□□□□ -1.85
VCP-205ENST00000479300 KRTAP25-1Q3LHN0 102 aa3.47□□□□□ -1.85
VCP-205ENST00000479300 Q5W150 140 aa3.45□□□□□ -1.86
VCP-205ENST00000479300 A8MUU9 505 aa3.44□□□□□ -1.86
VCP-205ENST00000479300 IGKV2-30P06310 120 aa3.44□□□□□ -1.86
VCP-205ENST00000479300 NOTCH2NLQ7Z3S9 236 aa3.44□□□□□ -1.86
VCP-205ENST00000479300 C20orf166-AS1Q96NR2 134 aa3.44□□□□□ -1.86
VCP-205ENST00000479300 MACF1Q9UPN3 7388 aaKnown RBP3.43□□□□□ -1.86
VCP-205ENST00000479300 SYNE2Q8WXH0 6885 aaKnown RBP3.4□□□□□ -1.86
VCP-205ENST00000479300 MT2AP02795 61 aa3.4□□□□□ -1.87
VCP-205ENST00000479300 IGKV2D-30A0A075B6S6 120 aa3.39□□□□□ -1.87
VCP-205ENST00000479300 MT1FP04733 61 aa3.38□□□□□ -1.87
VCP-205ENST00000479300 KRTAP4-8A0A0G2JLE6 195 aa3.37□□□□□ -1.87
VCP-205ENST00000479300 LCE5AQ5TCM9 118 aa3.37□□□□□ -1.87
VCP-205ENST00000479300 LCE1DQ5T752 114 aa3.36□□□□□ -1.87
VCP-205ENST00000479300 KRTAP16-1A8MUX0 517 aa3.35□□□□□ -1.87
VCP-205ENST00000479300 H0YAA0 97 aa3.34□□□□□ -1.87
VCP-205ENST00000479300 K7ERS5 55 aa3.33□□□□□ -1.88
VCP-205ENST00000479300 P0C880 135 aa3.33□□□□□ -1.88
VCP-205ENST00000479300 KRTAP19-6Q3LI70 58 aa3.31□□□□□ -1.88
VCP-205ENST00000479300 A0A1B0GU33 70 aa3.3□□□□□ -1.88
VCP-205ENST00000479300 KRTAP6-3Q3LI67 103 aa3.3□□□□□ -1.88
VCP-205ENST00000479300 H1FX-AS1Q4G0G2 97 aa3.3□□□□□ -1.88
VCP-205ENST00000479300 KRTAP10-10P60014 251 aa3.29□□□□□ -1.88
VCP-205ENST00000479300 NEBP20929 6669 aa3.25□□□□□ -1.89
VCP-205ENST00000479300 SPINT4Q6UDR6 99 aa3.24□□□□□ -1.89
VCP-205ENST00000479300 KRTAP4-9Q9BYQ8 210 aa3.24□□□□□ -1.89
VCP-205ENST00000479300 KRTAP4-7Q9BYR0 210 aa3.21□□□□□ -1.9
VCP-205ENST00000479300 MUC12Q9UKN1 5478 aa3.2□□□□□ -1.9
VCP-205ENST00000479300 NDUFAF8A1L188 74 aa3.19□□□□□ -1.9
VCP-205ENST00000479300 KRTAP4-11Q9BYQ6 195 aa3.19□□□□□ -1.9
VCP-205ENST00000479300 CRIPTQ9P021 101 aa3.17□□□□□ -1.9
VCP-205ENST00000479300 KRTAP20-1Q3LI63 56 aa3.16□□□□□ -1.9
VCP-205ENST00000479300 MDN1Q9NU22 5596 aa3.11□□□□□ -1.91
VCP-205ENST00000479300 KRTAP4-2Q9BYR5 136 aa3.1□□□□□ -1.91
VCP-205ENST00000479300 S4R3F8 94 aa3.1□□□□□ -1.91
VCP-205ENST00000479300 KMT2DO14686 5537 aa3.1□□□□□ -1.91
VCP-205ENST00000479300 LUZP6Q538Z0 58 aa3.08□□□□□ -1.92
VCP-205ENST00000479300 KRTAP5-9P26371 169 aa3.07□□□□□ -1.92
VCP-205ENST00000479300 C10orf95Q9H7T3 257 aa3.06□□□□□ -1.92
VCP-205ENST00000479300 MT1BP07438 61 aa3.04□□□□□ -1.92
VCP-205ENST00000479300 KRTAP13-4Q3LI77 160 aa3.04□□□□□ -1.92
VCP-205ENST00000479300 LCE1AQ5T7P2 110 aa3.02□□□□□ -1.93
VCP-205ENST00000479300 A0A0D9SG42 100 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms