RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 APOBP04114 4563 aaKnown RBP7.33□□□□□ -1.24
HLA-DMA-208ENST00000477541 H1FX-AS1Q4G0G2 97 aa7.32□□□□□ -1.24
HLA-DMA-208ENST00000477541 LRP1BQ9NZR2 4599 aa7.32□□□□□ -1.24
HLA-DMA-208ENST00000477541 K7ERS5 55 aa7.27□□□□□ -1.25
HLA-DMA-208ENST00000477541 KRTAP25-1Q3LHN0 102 aa7.27□□□□□ -1.25
HLA-DMA-208ENST00000477541 KRTAP3-1Q9BYR8 98 aa7.26□□□□□ -1.25
HLA-DMA-208ENST00000477541 VPS13BQ7Z7G8 4022 aa7.25□□□□□ -1.25
HLA-DMA-208ENST00000477541 COX6B2Q6YFQ2 88 aa7.23□□□□□ -1.25
HLA-DMA-208ENST00000477541 MYCBP2O75592 4640 aa7.21□□□□□ -1.26
HLA-DMA-208ENST00000477541 C9orf92A6NGG3 77 aa7.19□□□□□ -1.26
HLA-DMA-208ENST00000477541 PKHD1L1Q86WI1 4243 aa7.12□□□□□ -1.27
HLA-DMA-208ENST00000477541 HMCN2Q8NDA2 5059 aa7.12□□□□□ -1.27
HLA-DMA-208ENST00000477541 FAT1Q14517 4588 aa7.1□□□□□ -1.27
HLA-DMA-208ENST00000477541 FLG2Q5D862 2391 aaPredicted RBP7.09□□□□□ -1.27
HLA-DMA-208ENST00000477541 KRTAP10-4P60372 401 aaPredicted RBP7.09□□□□□ -1.27
HLA-DMA-208ENST00000477541 ROMO1P60602 79 aa7.08□□□□□ -1.28
HLA-DMA-208ENST00000477541 RPL37P61927 97 aaKnown RBP7.05□□□□□ -1.28
HLA-DMA-208ENST00000477541 Q5VSD8 79 aa7.05□□□□□ -1.28
HLA-DMA-208ENST00000477541 J3QL48 77 aa7.04□□□□□ -1.28
HLA-DMA-208ENST00000477541 H3BS24 57 aa7.04□□□□□ -1.28
HLA-DMA-208ENST00000477541 SMR3BP02814 79 aaPredicted RBP7.01□□□□□ -1.29
HLA-DMA-208ENST00000477541 KRTAP10-6P60371 365 aaPredicted RBP6.99□□□□□ -1.29
HLA-DMA-208ENST00000477541 S4R3F8 94 aa6.94□□□□□ -1.3
HLA-DMA-208ENST00000477541 RNF213Q63HN8 5207 aa6.92□□□□□ -1.3
HLA-DMA-208ENST00000477541 LCE2BO14633 110 aa6.88□□□□□ -1.31
HLA-DMA-208ENST00000477541 KRTAP10-8P60410 259 aa6.87□□□□□ -1.31
HLA-DMA-208ENST00000477541 KRTAP13-4Q3LI77 160 aa6.87□□□□□ -1.31
HLA-DMA-208ENST00000477541 LRP1Q07954 4544 aaKnown RBP6.84□□□□□ -1.31
HLA-DMA-208ENST00000477541 XP32Q5T750 250 aa6.84□□□□□ -1.31
HLA-DMA-208ENST00000477541 CRIPTQ9P021 101 aa6.82□□□□□ -1.32
HLA-DMA-208ENST00000477541 FAT3Q8TDW7 4589 aa6.82□□□□□ -1.32
HLA-DMA-208ENST00000477541 A0A0D9SG42 100 aa6.81□□□□□ -1.32
HLA-DMA-208ENST00000477541 TNXBP22105 4242 aa6.79□□□□□ -1.32
HLA-DMA-208ENST00000477541 TPRXLQ17RH7 258 aa6.79□□□□□ -1.32
HLA-DMA-208ENST00000477541 LRP2P98164 4655 aa6.77□□□□□ -1.33
HLA-DMA-208ENST00000477541 P0C880 135 aa6.76□□□□□ -1.33
HLA-DMA-208ENST00000477541 M0QZ58 72 aa6.76□□□□□ -1.33
HLA-DMA-208ENST00000477541 SPINT4Q6UDR6 99 aa6.75□□□□□ -1.33
HLA-DMA-208ENST00000477541 KRTAP9-2Q9BYQ4 174 aa6.73□□□□□ -1.33
HLA-DMA-208ENST00000477541 KRTAP9-6A0A140TA67 174 aa6.7□□□□□ -1.34
HLA-DMA-208ENST00000477541 KRTAP12-1P59990 96 aa6.7□□□□□ -1.34
HLA-DMA-208ENST00000477541 KRTAP12-2P59991 146 aa6.7□□□□□ -1.34
HLA-DMA-208ENST00000477541 KRTAP15-1Q3LI76 137 aa6.65□□□□□ -1.34
HLA-DMA-208ENST00000477541 C10orf95Q9H7T3 257 aa6.62□□□□□ -1.35
HLA-DMA-208ENST00000477541 MT1HL1P0DM35 61 aa6.6□□□□□ -1.35
HLA-DMA-208ENST00000477541 FAT4Q6V0I7 4981 aa6.56□□□□□ -1.36
HLA-DMA-208ENST00000477541 LCE2AQ5TA79 106 aaPredicted RBP6.48□□□□□ -1.37
HLA-DMA-208ENST00000477541 NDUFAF8A1L188 74 aa6.47□□□□□ -1.37
HLA-DMA-208ENST00000477541 R4GN34 69 aa6.43□□□□□ -1.38
HLA-DMA-208ENST00000477541 MUC2Q02817 5179 aa6.41□□□□□ -1.38
HLA-DMA-208ENST00000477541 LPAP08519 4548 aa6.36□□□□□ -1.39
HLA-DMA-208ENST00000477541 SEC61BP60468 96 aaKnown RBP6.35□□□□□ -1.39
HLA-DMA-208ENST00000477541 PP632Q6XCG6 107 aa6.33□□□□□ -1.4
HLA-DMA-208ENST00000477541 LOC100996750A0A140TA64 210 aa6.3□□□□□ -1.4
HLA-DMA-208ENST00000477541 KRTAP4-6Q9BYQ5 205 aa6.3□□□□□ -1.4
HLA-DMA-208ENST00000477541 PLAC4Q8WY50 150 aa6.28□□□□□ -1.4
HLA-DMA-208ENST00000477541 CRCT1Q9UGL9 99 aa6.27□□□□□ -1.41
HLA-DMA-208ENST00000477541 LCE2CQ5TA81 110 aa6.25□□□□□ -1.41
HLA-DMA-208ENST00000477541 FSIP2Q5CZC0 6907 aa6.2□□□□□ -1.42
HLA-DMA-208ENST00000477541 LORP23490 312 aaPredicted RBP6.14□□□□□ -1.43
HLA-DMA-208ENST00000477541 KRTAP23-1A1A580 65 aa6.13□□□□□ -1.43
HLA-DMA-208ENST00000477541 CAMK2N1Q7Z7J9 78 aa6.11□□□□□ -1.43
HLA-DMA-208ENST00000477541 LUZP6Q538Z0 58 aa6.1□□□□□ -1.43
HLA-DMA-208ENST00000477541 MUC17Q685J3 4493 aa6.08□□□□□ -1.44
HLA-DMA-208ENST00000477541 KRTAP19-2Q3LHN2 52 aa6.08□□□□□ -1.44
HLA-DMA-208ENST00000477541 KRTAP4-1Q9BYQ7 146 aa6.04□□□□□ -1.44
HLA-DMA-208ENST00000477541 TNP1P09430 55 aa5.99□□□□□ -1.45
HLA-DMA-208ENST00000477541 A0A0A0MQY5 61 aa5.96□□□□□ -1.46
HLA-DMA-208ENST00000477541 KRTAP9-7A8MTY7 169 aa5.96□□□□□ -1.46
HLA-DMA-208ENST00000477541 SPRR5A0A1B0GTR4 108 aa5.9□□□□□ -1.47
HLA-DMA-208ENST00000477541 FLGP20930 4061 aaPredicted RBP5.87□□□□□ -1.47
HLA-DMA-208ENST00000477541 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.86□□□□□ -1.47
HLA-DMA-208ENST00000477541 SPRR2GQ9BYE4 73 aa5.75□□□□□ -1.49
HLA-DMA-208ENST00000477541 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.49
HLA-DMA-208ENST00000477541 MT1HP80294 61 aa5.65□□□□□ -1.5
HLA-DMA-208ENST00000477541 KRTAP19-1Q8IUB9 90 aa5.61□□□□□ -1.51
HLA-DMA-208ENST00000477541 SSPOA2VEC9 5147 aa5.59□□□□□ -1.51
HLA-DMA-208ENST00000477541 USH2AO75445 5202 aa5.56□□□□□ -1.52
HLA-DMA-208ENST00000477541 FCGBPQ9Y6R7 5405 aaPredicted RBP5.55□□□□□ -1.52
HLA-DMA-208ENST00000477541 LCE3AQ5TA76 89 aa5.53□□□□□ -1.52
HLA-DMA-208ENST00000477541 KRTAP8-1Q8IUC2 63 aa5.52□□□□□ -1.53
HLA-DMA-208ENST00000477541 KRTAP19-8Q3LI54 63 aa5.48□□□□□ -1.53
HLA-DMA-208ENST00000477541 SYNE2Q8WXH0 6885 aaKnown RBP5.47□□□□□ -1.53
HLA-DMA-208ENST00000477541 M0R2T5 61 aa5.46□□□□□ -1.54
HLA-DMA-208ENST00000477541 INE1O15225 51 aa5.44□□□□□ -1.54
HLA-DMA-208ENST00000477541 PRO2289Q9P1D8 64 aa5.43□□□□□ -1.54
HLA-DMA-208ENST00000477541 MACF1Q9UPN3 7388 aaKnown RBP5.42□□□□□ -1.54
HLA-DMA-208ENST00000477541 MT2AP02795 61 aa5.41□□□□□ -1.54
HLA-DMA-208ENST00000477541 LCE3BQ5TA77 95 aa5.4□□□□□ -1.54
HLA-DMA-208ENST00000477541 KRTAP4-12Q9BQ66 201 aa5.4□□□□□ -1.54
HLA-DMA-208ENST00000477541 KRTAP10-10P60014 251 aa5.4□□□□□ -1.55
HLA-DMA-208ENST00000477541 MT1FP04733 61 aa5.39□□□□□ -1.55
HLA-DMA-208ENST00000477541 KRTAP9-8Q9BYQ0 159 aa5.34□□□□□ -1.55
HLA-DMA-208ENST00000477541 KRTAP9-9Q9BYP9 154 aa5.34□□□□□ -1.56
HLA-DMA-208ENST00000477541 KRTAP9-4Q9BYQ2 154 aa5.34□□□□□ -1.56
HLA-DMA-208ENST00000477541 KRTAP12-3P60328 96 aa5.31□□□□□ -1.56
HLA-DMA-208ENST00000477541 KRTAP10-5P60370 271 aa5.31□□□□□ -1.56
HLA-DMA-208ENST00000477541 KRTAP10-12P60413 245 aa5.31□□□□□ -1.56
HLA-DMA-208ENST00000477541 KRTAP6-3Q3LI67 103 aa5.31□□□□□ -1.56
HLA-DMA-208ENST00000477541 MT1XP80297 61 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms