RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 KLKP1Q107X0 134 aa3.37□□□□□ -1.87
LIMD1-204ENST00000474665 C1orf64Q8NEQ6 169 aa3.37□□□□□ -1.87
LIMD1-204ENST00000474665 LINC00208Q96KT6 92 aa3.37□□□□□ -1.87
LIMD1-204ENST00000474665 C5orf47Q569G3 176 aa3.36□□□□□ -1.87
LIMD1-204ENST00000474665 KMT2DO14686 5537 aa3.35□□□□□ -1.87
LIMD1-204ENST00000474665 MT2AP02795 61 aa3.35□□□□□ -1.87
LIMD1-204ENST00000474665 KRTAP19-6Q3LI70 58 aa3.35□□□□□ -1.87
LIMD1-204ENST00000474665 TRAV7A0A075B6U4 112 aa3.34□□□□□ -1.87
LIMD1-204ENST00000474665 MP68P56378 58 aa3.34□□□□□ -1.87
LIMD1-204ENST00000474665 MT1FP04733 61 aa3.33□□□□□ -1.88
LIMD1-204ENST00000474665 KRTAP3-3Q9BYR6 98 aa3.33□□□□□ -1.88
LIMD1-204ENST00000474665 H3BPC8 53 aa3.32□□□□□ -1.88
LIMD1-204ENST00000474665 KRTAP2-3P0C7H8 128 aa3.31□□□□□ -1.88
LIMD1-204ENST00000474665 LCA10Q71F78 164 aa3.31□□□□□ -1.88
LIMD1-204ENST00000474665 SERP2Q8N6R1 65 aa3.31□□□□□ -1.88
LIMD1-204ENST00000474665 ANAPC13Q9BS18 74 aa3.31□□□□□ -1.88
LIMD1-204ENST00000474665 KRTAP2-4Q9BYR9 128 aa3.31□□□□□ -1.88
LIMD1-204ENST00000474665 KRTAP9-3Q9BYQ3 159 aa3.3□□□□□ -1.88
LIMD1-204ENST00000474665 PCP4P48539 62 aa3.29□□□□□ -1.88
LIMD1-204ENST00000474665 COX7CP15954 63 aa3.28□□□□□ -1.88
LIMD1-204ENST00000474665 S4R3F8 94 aa3.28□□□□□ -1.88
LIMD1-204ENST00000474665 SNURFQ9Y675 71 aa3.27□□□□□ -1.89
LIMD1-204ENST00000474665 GPR98Q8WXG9 6306 aa3.27□□□□□ -1.89
LIMD1-204ENST00000474665 NDUFC1O43677 76 aa3.26□□□□□ -1.89
LIMD1-204ENST00000474665 KRTAP10-10P60014 251 aa3.26□□□□□ -1.89
LIMD1-204ENST00000474665 DMAC1Q96GE9 116 aa3.26□□□□□ -1.89
LIMD1-204ENST00000474665 A8MUN3 132 aa3.25□□□□□ -1.89
LIMD1-204ENST00000474665 C20orf197Q8N268 126 aa3.25□□□□□ -1.89
LIMD1-204ENST00000474665 CSAG1Q6PB30 78 aa3.24□□□□□ -1.89
LIMD1-204ENST00000474665 CYSTM1Q9H1C7 97 aa3.24□□□□□ -1.89
LIMD1-204ENST00000474665 MDN1Q9NU22 5596 aa3.22□□□□□ -1.89
LIMD1-204ENST00000474665 ATP5EP56381 51 aaPredicted RBP3.2□□□□□ -1.9
LIMD1-204ENST00000474665 TMEM258P61165 79 aa3.19□□□□□ -1.9
LIMD1-204ENST00000474665 H7BZZ5 65 aa3.18□□□□□ -1.9
LIMD1-204ENST00000474665 SPANXA2-OT1Q8N9U9 137 aa3.18□□□□□ -1.9
LIMD1-204ENST00000474665 KRTAP2-2Q9BYT5 123 aa3.18□□□□□ -1.9
LIMD1-204ENST00000474665 KRTAP2-1Q9BYU5 128 aa3.18□□□□□ -1.9
LIMD1-204ENST00000474665 CCDC179H3BU77 68 aa3.17□□□□□ -1.9
LIMD1-204ENST00000474665 H0YAA0 97 aa3.16□□□□□ -1.9
LIMD1-204ENST00000474665 ACYP2P14621 99 aa3.16□□□□□ -1.9
LIMD1-204ENST00000474665 KRTAP5-9P26371 169 aa3.15□□□□□ -1.91
LIMD1-204ENST00000474665 KRTAP3-2Q9BYR7 98 aa3.15□□□□□ -1.91
LIMD1-204ENST00000474665 SPRR2GQ9BYE4 73 aa3.14□□□□□ -1.91
LIMD1-204ENST00000474665 ADM2Q7Z4H4 148 aa3.13□□□□□ -1.91
LIMD1-204ENST00000474665 P0C880 135 aa3.12□□□□□ -1.91
LIMD1-204ENST00000474665 MT1BP07438 61 aa3.11□□□□□ -1.91
LIMD1-204ENST00000474665 KRTAP19-8Q3LI54 63 aa3.11□□□□□ -1.91
LIMD1-204ENST00000474665 RPS28P62857 69 aaKnown RBP3.1□□□□□ -1.91
LIMD1-204ENST00000474665 COA5Q86WW8 74 aa3.1□□□□□ -1.91
LIMD1-204ENST00000474665 CRIPTQ9P021 101 aa3.08□□□□□ -1.92
LIMD1-204ENST00000474665 CHKB-CPT1BH3BT56 60 aa3.07□□□□□ -1.92
LIMD1-204ENST00000474665 SERP1Q9Y6X1 66 aa3.07□□□□□ -1.92
LIMD1-204ENST00000474665 SPRR2EP22531 72 aa3.05□□□□□ -1.92
LIMD1-204ENST00000474665 SPRR2BP35325 72 aa3.05□□□□□ -1.92
LIMD1-204ENST00000474665 SPRR2AP35326 72 aa3.05□□□□□ -1.92
LIMD1-204ENST00000474665 SPTSSBQ8NFR3 76 aa3.05□□□□□ -1.92
LIMD1-204ENST00000474665 SVIPQ8NHG7 77 aa3.05□□□□□ -1.92
LIMD1-204ENST00000474665 Q5VV11 94 aa3.03□□□□□ -1.92
LIMD1-204ENST00000474665 A6NN06 94 aa3.01□□□□□ -1.93
LIMD1-204ENST00000474665 M0QZ58 72 aa3.01□□□□□ -1.93
LIMD1-204ENST00000474665 KRTAP13-4Q3LI77 160 aa3□□□□□ -1.93
LIMD1-204ENST00000474665 R4GN34 69 aa3□□□□□ -1.93
LIMD1-204ENST00000474665 V9GYY9 64 aa3□□□□□ -1.93
LIMD1-204ENST00000474665 SMIM26A0A096LP01 95 aa2.99□□□□□ -1.93
LIMD1-204ENST00000474665 KRTAP10-5P60370 271 aa2.97□□□□□ -1.93
LIMD1-204ENST00000474665 SPRR2FQ96RM1 72 aa2.96□□□□□ -1.94
LIMD1-204ENST00000474665 SPRR2DP22532 72 aa2.95□□□□□ -1.94
LIMD1-204ENST00000474665 MT1XP80297 61 aa2.95□□□□□ -1.94
LIMD1-204ENST00000474665 LINC01554Q52M75 96 aa2.95□□□□□ -1.94
LIMD1-204ENST00000474665 Q1T7F1 81 aa2.94□□□□□ -1.94
LIMD1-204ENST00000474665 LCE1AQ5T7P2 110 aa2.93□□□□□ -1.94
LIMD1-204ENST00000474665 A0A1B0GU33 70 aa2.91□□□□□ -1.94
LIMD1-204ENST00000474665 LCE3BQ5TA77 95 aa2.91□□□□□ -1.94
LIMD1-204ENST00000474665 SPATA8Q6RVD6 105 aa2.91□□□□□ -1.94
LIMD1-204ENST00000474665 PLAC4Q8WY50 150 aa2.91□□□□□ -1.94
LIMD1-204ENST00000474665 KRTAP4-9Q9BYQ8 210 aa2.91□□□□□ -1.94
LIMD1-204ENST00000474665 SEC61GP60059 68 aa2.9□□□□□ -1.95
LIMD1-204ENST00000474665 PRR15LQ9BU68 103 aa2.9□□□□□ -1.95
LIMD1-204ENST00000474665 LINC01558Q9Y6Z2 57 aa2.9□□□□□ -1.95
LIMD1-204ENST00000474665 A0A1B0GU69 56 aa2.89□□□□□ -1.95
LIMD1-204ENST00000474665 A0A0D9SG42 100 aa2.86□□□□□ -1.95
LIMD1-204ENST00000474665 KRTAP12-1P59990 96 aa2.85□□□□□ -1.95
LIMD1-204ENST00000474665 A8MU10 97 aa2.84□□□□□ -1.95
LIMD1-204ENST00000474665 PRO2289Q9P1D8 64 aa2.84□□□□□ -1.95
LIMD1-204ENST00000474665 KRTAP12-2P59991 146 aa2.83□□□□□ -1.96
LIMD1-204ENST00000474665 KRTAP10-7P60409 375 aaPredicted RBP2.82□□□□□ -1.96
LIMD1-204ENST00000474665 DSTQ03001 7570 aaKnown RBP2.82□□□□□ -1.96
LIMD1-204ENST00000474665 KRTAP5-10Q6L8G5 202 aa2.81□□□□□ -1.96
LIMD1-204ENST00000474665 AHNAK2Q8IVF2 5795 aa2.81□□□□□ -1.96
LIMD1-204ENST00000474665 UQCR11O14957 56 aa2.79□□□□□ -1.96
LIMD1-204ENST00000474665 KRTAP10-12P60413 245 aa2.79□□□□□ -1.96
LIMD1-204ENST00000474665 KRTAP4-8A0A0G2JLE6 195 aa2.78□□□□□ -1.96
LIMD1-204ENST00000474665 SPRR5A0A1B0GTR4 108 aa2.78□□□□□ -1.96
LIMD1-204ENST00000474665 PSPHP1O15172 72 aa2.78□□□□□ -1.96
LIMD1-204ENST00000474665 SPINT4Q6UDR6 99 aa2.78□□□□□ -1.96
LIMD1-204ENST00000474665 KRTAP4-8Q9BYQ9 185 aa2.78□□□□□ -1.96
LIMD1-204ENST00000474665 CAMK2N1Q7Z7J9 78 aa2.77□□□□□ -1.97
LIMD1-204ENST00000474665 HMCN1Q96RW7 5635 aa2.77□□□□□ -1.97
LIMD1-204ENST00000474665 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
LIMD1-204ENST00000474665 KRTAP8-1Q8IUC2 63 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms