RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 ASB16-AS1Q495Z4 193 aa2.01□□□□□ -2.09
SYNE1-218ENST00000468937 Q5XG85 94 aa2.01□□□□□ -2.09
SYNE1-218ENST00000468937 HRCT1Q6UXD1 115 aa2.01□□□□□ -2.09
SYNE1-218ENST00000468937 SPINK1P00995 79 aa2□□□□□ -2.09
SYNE1-218ENST00000468937 SPAG11AQ6PDA7 123 aa2□□□□□ -2.09
SYNE1-218ENST00000468937 LINC00643Q86TS7 51 aa2□□□□□ -2.09
SYNE1-218ENST00000468937 UBL5Q9BZL1 73 aa2□□□□□ -2.09
SYNE1-218ENST00000468937 LINC00472Q9H8W2 130 aa2□□□□□ -2.09
SYNE1-218ENST00000468937 SS18L2Q9UHA2 77 aa2□□□□□ -2.09
SYNE1-218ENST00000468937 NREPQ16612 68 aa1.99□□□□□ -2.09
SYNE1-218ENST00000468937 LIMD2Q9BT23 127 aa1.99□□□□□ -2.09
SYNE1-218ENST00000468937 IGKV3D-7A0A0C4DH55 119 aa1.98□□□□□ -2.09
SYNE1-218ENST00000468937 MT-ATP8P03928 68 aa1.98□□□□□ -2.09
SYNE1-218ENST00000468937 C1orf195Q5TG92 126 aa1.98□□□□□ -2.09
SYNE1-218ENST00000468937 ATP5EP2Q5VTU8 51 aa1.98□□□□□ -2.09
SYNE1-218ENST00000468937 ANAPC13Q9BS18 74 aa1.98□□□□□ -2.09
SYNE1-218ENST00000468937 A8MWP4 228 aa1.97□□□□□ -2.09
SYNE1-218ENST00000468937 J3KT08 172 aa1.97□□□□□ -2.09
SYNE1-218ENST00000468937 K7EQZ3 153 aa1.97□□□□□ -2.09
SYNE1-218ENST00000468937 SIGMAR1Q99720 223 aa1.97□□□□□ -2.09
SYNE1-218ENST00000468937 IMUPQ9GZP8 106 aa1.97□□□□□ -2.09
SYNE1-218ENST00000468937 A0A087WVE0 104 aa1.96□□□□□ -2.1
SYNE1-218ENST00000468937 IGHV6-1A0A0B4J1U7 121 aa1.96□□□□□ -2.1
SYNE1-218ENST00000468937 HRES1P13985 223 aa1.96□□□□□ -2.1
SYNE1-218ENST00000468937 TPRXLQ17RH7 258 aa1.96□□□□□ -2.1
SYNE1-218ENST00000468937 KRTAP13-4Q3LI77 160 aa1.96□□□□□ -2.1
SYNE1-218ENST00000468937 RETNLBQ9BQ08 111 aa1.96□□□□□ -2.1
SYNE1-218ENST00000468937 MMP24-AS1A0A0U1RRL7 71 aa1.95□□□□□ -2.1
SYNE1-218ENST00000468937 HIST1H4AP62805 103 aaKnown RBP1.95□□□□□ -2.1
SYNE1-218ENST00000468937 PRR15Q8IV56 129 aa1.95□□□□□ -2.1
SYNE1-218ENST00000468937 NDUFB1O75438 58 aa1.94□□□□□ -2.1
SYNE1-218ENST00000468937 C4orf26Q17RF5 130 aa1.94□□□□□ -2.1
SYNE1-218ENST00000468937 FLGP20930 4061 aaPredicted RBP1.94□□□□□ -2.1
SYNE1-218ENST00000468937 FSIP2Q5CZC0 6907 aa1.94□□□□□ -2.1
SYNE1-218ENST00000468937 FAM236AA0A1B0GUQ0 79 aa1.93□□□□□ -2.1
SYNE1-218ENST00000468937 FAM236BA0A1B0GV22 79 aa1.93□□□□□ -2.1
SYNE1-218ENST00000468937 HCG22E2RYF7 251 aa1.93□□□□□ -2.1
SYNE1-218ENST00000468937 C8orf87E5RJ46 101 aa1.93□□□□□ -2.1
SYNE1-218ENST00000468937 FP248Q71RG6 208 aaPredicted RBP1.93□□□□□ -2.1
SYNE1-218ENST00000468937 hDV103S1A0JD37 113 aa1.92□□□□□ -2.1
SYNE1-218ENST00000468937 SCGB1A1P11684 91 aa1.92□□□□□ -2.1
SYNE1-218ENST00000468937 CASC2Q6XLA1 102 aa1.92□□□□□ -2.1
SYNE1-218ENST00000468937 WFDC13Q8IUB5 93 aa1.92□□□□□ -2.1
SYNE1-218ENST00000468937 TMEM254Q8TBM7 123 aa1.92□□□□□ -2.1
SYNE1-218ENST00000468937 MP68P56378 58 aa1.91□□□□□ -2.1
SYNE1-218ENST00000468937 LINC00313P59037 77 aa1.91□□□□□ -2.1
SYNE1-218ENST00000468937 LUZP6Q538Z0 58 aa1.91□□□□□ -2.1
SYNE1-218ENST00000468937 MRPL34Q9BQ48 92 aaKnown RBP1.91□□□□□ -2.1
SYNE1-218ENST00000468937 RBM12B-AS1Q9P1G2 102 aa1.91□□□□□ -2.1
SYNE1-218ENST00000468937 C9orf92A6NGG3 77 aa1.9□□□□□ -2.11
SYNE1-218ENST00000468937 ATOX1O00244 68 aa1.9□□□□□ -2.11
SYNE1-218ENST00000468937 C20orf166-AS1Q96NR2 134 aa1.9□□□□□ -2.11
SYNE1-218ENST00000468937 K7ERS5 55 aa1.89□□□□□ -2.11
SYNE1-218ENST00000468937 KRTAP4-1Q9BYQ7 146 aa1.89□□□□□ -2.11
SYNE1-218ENST00000468937 R4GN34 69 aa1.89□□□□□ -2.11
SYNE1-218ENST00000468937 TRAV7A0A075B6U4 112 aa1.88□□□□□ -2.11
SYNE1-218ENST00000468937 SERP2Q8N6R1 65 aa1.88□□□□□ -2.11
SYNE1-218ENST00000468937 TP53AIP1Q9HCN2 124 aa1.88□□□□□ -2.11
SYNE1-218ENST00000468937 UQCRQO14949 82 aa1.87□□□□□ -2.11
SYNE1-218ENST00000468937 COX7CP15954 63 aa1.87□□□□□ -2.11
SYNE1-218ENST00000468937 RPL37P61927 97 aaKnown RBP1.87□□□□□ -2.11
SYNE1-218ENST00000468937 SMIM20Q8N5G0 67 aa1.87□□□□□ -2.11
SYNE1-218ENST00000468937 TRAV22A0A0B4J277 110 aa1.86□□□□□ -2.11
SYNE1-218ENST00000468937 H0Y9P7 68 aa1.85□□□□□ -2.11
SYNE1-218ENST00000468937 KLKP1Q107X0 134 aa1.85□□□□□ -2.11
SYNE1-218ENST00000468937 H3BPC8 53 aa1.84□□□□□ -2.11
SYNE1-218ENST00000468937 CCDC179H3BU77 68 aa1.84□□□□□ -2.11
SYNE1-218ENST00000468937 C20orf197Q8N268 126 aa1.84□□□□□ -2.11
SYNE1-218ENST00000468937 LINC00208Q96KT6 92 aa1.84□□□□□ -2.11
SYNE1-218ENST00000468937 CYSTM1Q9H1C7 97 aa1.84□□□□□ -2.11
SYNE1-218ENST00000468937 PMAIP1Q13794 54 aa1.83□□□□□ -2.12
SYNE1-218ENST00000468937 PCOTHQ58A44 107 aa1.83□□□□□ -2.12
SYNE1-218ENST00000468937 ATP11AUNQ6ZP68 121 aa1.83□□□□□ -2.12
SYNE1-218ENST00000468937 CYP4F30PQ9H0H9 118 aa1.83□□□□□ -2.12
SYNE1-218ENST00000468937 SNURFQ9Y675 71 aa1.83□□□□□ -2.12
SYNE1-218ENST00000468937 LOC101927531A0A1B0GV80 90 aa1.82□□□□□ -2.12
SYNE1-218ENST00000468937 H7BZZ5 65 aa1.82□□□□□ -2.12
SYNE1-218ENST00000468937 KRTAP19-2Q3LHN2 52 aa1.82□□□□□ -2.12
SYNE1-218ENST00000468937 C7orf65Q6ZTY9 151 aa1.82□□□□□ -2.12
SYNE1-218ENST00000468937 SPINK7P58062 85 aa1.81□□□□□ -2.12
SYNE1-218ENST00000468937 MT1HP80294 61 aa1.81□□□□□ -2.12
SYNE1-218ENST00000468937 NDUFC1O43677 76 aa1.8□□□□□ -2.12
SYNE1-218ENST00000468937 A6NED7 52 aa1.79□□□□□ -2.12
SYNE1-218ENST00000468937 KRTAP12-1P59990 96 aa1.79□□□□□ -2.12
SYNE1-218ENST00000468937 SYNE2Q8WXH0 6885 aaKnown RBP1.78□□□□□ -2.12
SYNE1-218ENST00000468937 FAM236DA0A1B0GTK5 79 aa1.78□□□□□ -2.12
SYNE1-218ENST00000468937 FAM236CP0DP71 79 aa1.78□□□□□ -2.12
SYNE1-218ENST00000468937 USH2AO75445 5202 aa1.78□□□□□ -2.12
SYNE1-218ENST00000468937 FCGBPQ9Y6R7 5405 aaPredicted RBP1.78□□□□□ -2.13
SYNE1-218ENST00000468937 M0R2T5 61 aa1.77□□□□□ -2.13
SYNE1-218ENST00000468937 TMEM258P61165 79 aa1.77□□□□□ -2.13
SYNE1-218ENST00000468937 COX6B2Q6YFQ2 88 aa1.77□□□□□ -2.13
SYNE1-218ENST00000468937 DMAC1Q96GE9 116 aa1.77□□□□□ -2.13
SYNE1-218ENST00000468937 SSPOA2VEC9 5147 aa1.77□□□□□ -2.13
SYNE1-218ENST00000468937 A8MUN3 132 aa1.75□□□□□ -2.13
SYNE1-218ENST00000468937 ATP5EP56381 51 aaPredicted RBP1.75□□□□□ -2.13
SYNE1-218ENST00000468937 MACF1Q9UPN3 7388 aaKnown RBP1.75□□□□□ -2.13
SYNE1-218ENST00000468937 ACYP2P14621 99 aa1.73□□□□□ -2.13
SYNE1-218ENST00000468937 H1FX-AS1Q4G0G2 97 aa1.73□□□□□ -2.13
SYNE1-218ENST00000468937 LCA10Q71F78 164 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms