RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 SPINT4Q6UDR6 99 aa4.59□□□□□ -1.68
BRCA1-208ENST00000468300 H3BPC8 53 aa4.57□□□□□ -1.68
BRCA1-208ENST00000468300 SPANXA2-OT1Q8N9U9 137 aa4.53□□□□□ -1.68
BRCA1-208ENST00000468300 MRPL34Q9BQ48 92 aaKnown RBP4.53□□□□□ -1.68
BRCA1-208ENST00000468300 KRTAP13-3Q3SY46 172 aa4.52□□□□□ -1.69
BRCA1-208ENST00000468300 CAMK2N1Q7Z7J9 78 aa4.52□□□□□ -1.69
BRCA1-208ENST00000468300 LPAP08519 4548 aa4.51□□□□□ -1.69
BRCA1-208ENST00000468300 Q5W150 140 aa4.5□□□□□ -1.69
BRCA1-208ENST00000468300 DMBT1Q9UGM3 2413 aaPredicted RBP4.49□□□□□ -1.69
BRCA1-208ENST00000468300 C9orf92A6NGG3 77 aa4.49□□□□□ -1.69
BRCA1-208ENST00000468300 DMAC1Q96GE9 116 aa4.48□□□□□ -1.69
BRCA1-208ENST00000468300 UQCR11O14957 56 aa4.46□□□□□ -1.7
BRCA1-208ENST00000468300 TP53AIP1Q9HCN2 124 aa4.46□□□□□ -1.7
BRCA1-208ENST00000468300 SPATA8Q6RVD6 105 aa4.45□□□□□ -1.7
BRCA1-208ENST00000468300 A0A1B0GU69 56 aa4.45□□□□□ -1.7
BRCA1-208ENST00000468300 HERC1Q15751 4861 aa4.44□□□□□ -1.7
BRCA1-208ENST00000468300 IGLV7-46A0A075B6I9 117 aa4.44□□□□□ -1.7
BRCA1-208ENST00000468300 LRP2P98164 4655 aa4.44□□□□□ -1.7
BRCA1-208ENST00000468300 XP32Q5T750 250 aa4.43□□□□□ -1.7
BRCA1-208ENST00000468300 KRTAP23-1A1A580 65 aa4.42□□□□□ -1.7
BRCA1-208ENST00000468300 TPRXLQ17RH7 258 aa4.4□□□□□ -1.7
BRCA1-208ENST00000468300 HMCN2Q8NDA2 5059 aa4.39□□□□□ -1.71
BRCA1-208ENST00000468300 CRIPTQ9P021 101 aa4.38□□□□□ -1.71
BRCA1-208ENST00000468300 RPL37P61927 97 aaKnown RBP4.38□□□□□ -1.71
BRCA1-208ENST00000468300 IGKV2-30P06310 120 aa4.37□□□□□ -1.71
BRCA1-208ENST00000468300 KRTAP15-1Q3LI76 137 aa4.34□□□□□ -1.71
BRCA1-208ENST00000468300 MUC17Q685J3 4493 aa4.34□□□□□ -1.72
BRCA1-208ENST00000468300 PCOTHQ58A44 107 aa4.33□□□□□ -1.72
BRCA1-208ENST00000468300 IGKV2D-30A0A075B6S6 120 aa4.3□□□□□ -1.72
BRCA1-208ENST00000468300 HRES1P13985 223 aa4.3□□□□□ -1.72
BRCA1-208ENST00000468300 KRTAP4-1Q9BYQ7 146 aa4.27□□□□□ -1.73
BRCA1-208ENST00000468300 KRTAP3-1Q9BYR8 98 aa4.26□□□□□ -1.73
BRCA1-208ENST00000468300 MUC2Q02817 5179 aa4.26□□□□□ -1.73
BRCA1-208ENST00000468300 ACYP2P14621 99 aa4.26□□□□□ -1.73
BRCA1-208ENST00000468300 UBR4Q5T4S7 5183 aa4.21□□□□□ -1.73
BRCA1-208ENST00000468300 A0A1B0GU33 70 aa4.21□□□□□ -1.74
BRCA1-208ENST00000468300 KRTAP19-2Q3LHN2 52 aa4.19□□□□□ -1.74
BRCA1-208ENST00000468300 COX6B2Q6YFQ2 88 aa4.17□□□□□ -1.74
BRCA1-208ENST00000468300 LCE2DQ5TA82 110 aaPredicted RBP4.16□□□□□ -1.74
BRCA1-208ENST00000468300 RNF213Q63HN8 5207 aa4.15□□□□□ -1.74
BRCA1-208ENST00000468300 R4GN34 69 aa4.14□□□□□ -1.75
BRCA1-208ENST00000468300 KRTAP3-3Q9BYR6 98 aa4.13□□□□□ -1.75
BRCA1-208ENST00000468300 KRTAP3-2Q9BYR7 98 aa4.13□□□□□ -1.75
BRCA1-208ENST00000468300 FLGP20930 4061 aaPredicted RBP4.11□□□□□ -1.75
BRCA1-208ENST00000468300 H1FX-AS1Q4G0G2 97 aa4.07□□□□□ -1.76
BRCA1-208ENST00000468300 LCE2CQ5TA81 110 aa4.07□□□□□ -1.76
BRCA1-208ENST00000468300 PRO2289Q9P1D8 64 aa4.05□□□□□ -1.76
BRCA1-208ENST00000468300 FAT4Q6V0I7 4981 aa4.05□□□□□ -1.76
BRCA1-208ENST00000468300 S4R3F8 94 aa4.02□□□□□ -1.77
BRCA1-208ENST00000468300 C10orf95Q9H7T3 257 aa3.99□□□□□ -1.77
BRCA1-208ENST00000468300 H0YAA0 97 aa3.95□□□□□ -1.78
BRCA1-208ENST00000468300 MT1HP80294 61 aa3.94□□□□□ -1.78
BRCA1-208ENST00000468300 KRTAP10-6P60371 365 aaPredicted RBP3.94□□□□□ -1.78
BRCA1-208ENST00000468300 PLAC4Q8WY50 150 aa3.88□□□□□ -1.79
BRCA1-208ENST00000468300 LORP23490 312 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-208ENST00000468300 KRTAP13-4Q3LI77 160 aa3.84□□□□□ -1.79
BRCA1-208ENST00000468300 LCE2AQ5TA79 106 aaPredicted RBP3.82□□□□□ -1.8
BRCA1-208ENST00000468300 KRTAP9-8Q9BYQ0 159 aa3.82□□□□□ -1.8
BRCA1-208ENST00000468300 MT2AP02795 61 aa3.78□□□□□ -1.8
BRCA1-208ENST00000468300 MT1FP04733 61 aa3.77□□□□□ -1.81
BRCA1-208ENST00000468300 M0R2T5 61 aa3.76□□□□□ -1.81
BRCA1-208ENST00000468300 M0QZ58 72 aa3.71□□□□□ -1.82
BRCA1-208ENST00000468300 KRTAP19-1Q8IUB9 90 aa3.71□□□□□ -1.82
BRCA1-208ENST00000468300 INE1O15225 51 aa3.7□□□□□ -1.82
BRCA1-208ENST00000468300 SPRR2GQ9BYE4 73 aa3.68□□□□□ -1.82
BRCA1-208ENST00000468300 KRTAP9-3Q9BYQ3 159 aa3.68□□□□□ -1.82
BRCA1-208ENST00000468300 KRTAP10-10P60014 251 aa3.67□□□□□ -1.82
BRCA1-208ENST00000468300 A0A0D9SG42 100 aa3.66□□□□□ -1.82
BRCA1-208ENST00000468300 KRTAP12-2P59991 146 aa3.66□□□□□ -1.82
BRCA1-208ENST00000468300 KRTAP12-1P59990 96 aa3.65□□□□□ -1.82
BRCA1-208ENST00000468300 LCE2BO14633 110 aa3.62□□□□□ -1.83
BRCA1-208ENST00000468300 KRTAP19-8Q3LI54 63 aa3.59□□□□□ -1.83
BRCA1-208ENST00000468300 MT1BP07438 61 aa3.57□□□□□ -1.84
BRCA1-208ENST00000468300 PP632Q6XCG6 107 aa3.54□□□□□ -1.84
BRCA1-208ENST00000468300 USH2AO75445 5202 aa3.53□□□□□ -1.84
BRCA1-208ENST00000468300 KRTAP10-5P60370 271 aa3.45□□□□□ -1.86
BRCA1-208ENST00000468300 MT1XP80297 61 aa3.45□□□□□ -1.86
BRCA1-208ENST00000468300 SSPOA2VEC9 5147 aa3.43□□□□□ -1.86
BRCA1-208ENST00000468300 FSIP2Q5CZC0 6907 aa3.36□□□□□ -1.87
BRCA1-208ENST00000468300 KRTAP19-6Q3LI70 58 aa3.33□□□□□ -1.88
BRCA1-208ENST00000468300 KRTAP10-7P60409 375 aaPredicted RBP3.31□□□□□ -1.88
BRCA1-208ENST00000468300 KRTAP9-2Q9BYQ4 174 aa3.3□□□□□ -1.88
BRCA1-208ENST00000468300 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
BRCA1-208ENST00000468300 KMT2DO14686 5537 aa3.26□□□□□ -1.89
BRCA1-208ENST00000468300 TNP1P09430 55 aa3.26□□□□□ -1.89
BRCA1-208ENST00000468300 KRTAP10-12P60413 245 aa3.26□□□□□ -1.89
BRCA1-208ENST00000468300 LCE3AQ5TA76 89 aa3.22□□□□□ -1.89
BRCA1-208ENST00000468300 SPRR5A0A1B0GTR4 108 aa3.2□□□□□ -1.9
BRCA1-208ENST00000468300 KRTAP4-8A0A0G2JLE6 195 aa3.19□□□□□ -1.9
BRCA1-208ENST00000468300 KRTAP4-8Q9BYQ9 185 aa3.19□□□□□ -1.9
BRCA1-208ENST00000468300 CRCT1Q9UGL9 99 aa3.17□□□□□ -1.9
BRCA1-208ENST00000468300 KRTAP8-1Q8IUC2 63 aa3.14□□□□□ -1.91
BRCA1-208ENST00000468300 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.91
BRCA1-208ENST00000468300 KRTAP19-5Q3LI72 72 aa3.09□□□□□ -1.91
BRCA1-208ENST00000468300 KRTAP19-7Q3SYF9 63 aa3.09□□□□□ -1.91
BRCA1-208ENST00000468300 KRTAP9-6A0A140TA67 174 aa3.07□□□□□ -1.92
BRCA1-208ENST00000468300 KRTAP12-3P60328 96 aa3.06□□□□□ -1.92
BRCA1-208ENST00000468300 SYNE2Q8WXH0 6885 aaKnown RBP3.03□□□□□ -1.93
BRCA1-208ENST00000468300 KRTAP2-2Q9BYT5 123 aa3.02□□□□□ -1.93
BRCA1-208ENST00000468300 MT1EP04732 61 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms