RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 MT2AP02795 61 aa6.34□□□□□ -1.39
COL28A1-206ENST00000465339 ATP5EP2Q5VTU8 51 aa6.31□□□□□ -1.4
COL28A1-206ENST00000465339 KRTAP5-3Q6L8H2 238 aa6.3□□□□□ -1.4
COL28A1-206ENST00000465339 KRTAP10-10P60014 251 aa6.29□□□□□ -1.4
COL28A1-206ENST00000465339 C4orf26Q17RF5 130 aa6.28□□□□□ -1.4
COL28A1-206ENST00000465339 MT1FP04733 61 aa6.27□□□□□ -1.41
COL28A1-206ENST00000465339 HIST1H4AP62805 103 aaKnown RBP6.25□□□□□ -1.41
COL28A1-206ENST00000465339 LINC00643Q86TS7 51 aa6.24□□□□□ -1.41
COL28A1-206ENST00000465339 TRAV22A0A0B4J277 110 aa6.2□□□□□ -1.42
COL28A1-206ENST00000465339 C1orf64Q8NEQ6 169 aa6.2□□□□□ -1.42
COL28A1-206ENST00000465339 SMIM20Q8N5G0 67 aa6.19□□□□□ -1.42
COL28A1-206ENST00000465339 PRAC1Q96KF2 57 aa6.19□□□□□ -1.42
COL28A1-206ENST00000465339 CYP4F30PQ9H0H9 118 aa6.19□□□□□ -1.42
COL28A1-206ENST00000465339 UQCRQO14949 82 aa6.18□□□□□ -1.42
COL28A1-206ENST00000465339 LOC101927531A0A1B0GV80 90 aa6.17□□□□□ -1.42
COL28A1-206ENST00000465339 J3QR89 54 aa6.17□□□□□ -1.42
COL28A1-206ENST00000465339 A0A087WVE0 104 aa6.14□□□□□ -1.43
COL28A1-206ENST00000465339 ATOX1O00244 68 aa6.14□□□□□ -1.43
COL28A1-206ENST00000465339 PRO0628Q9UI54 55 aa6.13□□□□□ -1.43
COL28A1-206ENST00000465339 S4R3F8 94 aa6.13□□□□□ -1.43
COL28A1-206ENST00000465339 H0Y9P7 68 aa6.12□□□□□ -1.43
COL28A1-206ENST00000465339 CSAG1Q6PB30 78 aa6.11□□□□□ -1.43
COL28A1-206ENST00000465339 USH2AO75445 5202 aa6.08□□□□□ -1.44
COL28A1-206ENST00000465339 LCA10Q71F78 164 aa6.08□□□□□ -1.44
COL28A1-206ENST00000465339 OCR1Q9BZK8 76 aa6.05□□□□□ -1.44
COL28A1-206ENST00000465339 LINC00208Q96KT6 92 aa6.04□□□□□ -1.44
COL28A1-206ENST00000465339 K7ERU9 68 aa6.03□□□□□ -1.44
COL28A1-206ENST00000465339 MP68P56378 58 aa6.03□□□□□ -1.44
COL28A1-206ENST00000465339 FAM236AA0A1B0GUQ0 79 aa6.01□□□□□ -1.45
COL28A1-206ENST00000465339 FAM236BA0A1B0GV22 79 aa6.01□□□□□ -1.45
COL28A1-206ENST00000465339 SSPOA2VEC9 5147 aa5.99□□□□□ -1.45
COL28A1-206ENST00000465339 A8MUN3 132 aa5.98□□□□□ -1.45
COL28A1-206ENST00000465339 H3BPC8 53 aa5.98□□□□□ -1.45
COL28A1-206ENST00000465339 KLKP1Q107X0 134 aa5.97□□□□□ -1.45
COL28A1-206ENST00000465339 IMUPQ9GZP8 106 aa5.97□□□□□ -1.45
COL28A1-206ENST00000465339 NDUFC1O43677 76 aa5.94□□□□□ -1.46
COL28A1-206ENST00000465339 KRTAP19-6Q3LI70 58 aa5.94□□□□□ -1.46
COL28A1-206ENST00000465339 RPS28P62857 69 aaKnown RBP5.92□□□□□ -1.46
COL28A1-206ENST00000465339 MT-ATP8P03928 68 aa5.9□□□□□ -1.46
COL28A1-206ENST00000465339 SPRR2GQ9BYE4 73 aa5.89□□□□□ -1.47
COL28A1-206ENST00000465339 FCGBPQ9Y6R7 5405 aaPredicted RBP5.88□□□□□ -1.47
COL28A1-206ENST00000465339 H0YAA0 97 aa5.87□□□□□ -1.47
COL28A1-206ENST00000465339 PMAIP1Q13794 54 aa5.87□□□□□ -1.47
COL28A1-206ENST00000465339 CRIPTQ9P021 101 aa5.87□□□□□ -1.47
COL28A1-206ENST00000465339 TRAV7A0A075B6U4 112 aa5.84□□□□□ -1.47
COL28A1-206ENST00000465339 KRTAP19-8Q3LI54 63 aa5.83□□□□□ -1.48
COL28A1-206ENST00000465339 LCE1AQ5T7P2 110 aa5.83□□□□□ -1.48
COL28A1-206ENST00000465339 Q5VV11 94 aa5.83□□□□□ -1.48
COL28A1-206ENST00000465339 DMAC1Q96GE9 116 aa5.82□□□□□ -1.48
COL28A1-206ENST00000465339 MT1BP07438 61 aa5.8□□□□□ -1.48
COL28A1-206ENST00000465339 ADM2Q7Z4H4 148 aa5.78□□□□□ -1.48
COL28A1-206ENST00000465339 ACYP2P14621 99 aa5.73□□□□□ -1.49
COL28A1-206ENST00000465339 MACF1Q9UPN3 7388 aaKnown RBP5.71□□□□□ -1.49
COL28A1-206ENST00000465339 A6NN06 94 aa5.71□□□□□ -1.5
COL28A1-206ENST00000465339 C20orf197Q8N268 126 aa5.7□□□□□ -1.5
COL28A1-206ENST00000465339 ANAPC13Q9BS18 74 aa5.7□□□□□ -1.5
COL28A1-206ENST00000465339 SERP2Q8N6R1 65 aa5.68□□□□□ -1.5
COL28A1-206ENST00000465339 SNURFQ9Y675 71 aa5.67□□□□□ -1.5
COL28A1-206ENST00000465339 KRTAP10-5P60370 271 aa5.66□□□□□ -1.5
COL28A1-206ENST00000465339 SPTSSBQ8NFR3 76 aa5.66□□□□□ -1.5
COL28A1-206ENST00000465339 SYNE2Q8WXH0 6885 aaKnown RBP5.66□□□□□ -1.5
COL28A1-206ENST00000465339 P0C880 135 aa5.64□□□□□ -1.51
COL28A1-206ENST00000465339 R4GN34 69 aa5.64□□□□□ -1.51
COL28A1-206ENST00000465339 SPANXA2-OT1Q8N9U9 137 aa5.63□□□□□ -1.51
COL28A1-206ENST00000465339 NDUFAF8A1L188 74 aa5.62□□□□□ -1.51
COL28A1-206ENST00000465339 CHKB-CPT1BH3BT56 60 aa5.61□□□□□ -1.51
COL28A1-206ENST00000465339 PSPHP1O15172 72 aa5.59□□□□□ -1.51
COL28A1-206ENST00000465339 KRTAP6-3Q3LI67 103 aa5.59□□□□□ -1.51
COL28A1-206ENST00000465339 M0QZ58 72 aa5.58□□□□□ -1.52
COL28A1-206ENST00000465339 PLAC4Q8WY50 150 aa5.58□□□□□ -1.52
COL28A1-206ENST00000465339 SMIM26A0A096LP01 95 aa5.54□□□□□ -1.52
COL28A1-206ENST00000465339 PRO2289Q9P1D8 64 aa5.53□□□□□ -1.52
COL28A1-206ENST00000465339 COX7CP15954 63 aa5.52□□□□□ -1.53
COL28A1-206ENST00000465339 CCDC179H3BU77 68 aa5.51□□□□□ -1.53
COL28A1-206ENST00000465339 LINC01554Q52M75 96 aa5.49□□□□□ -1.53
COL28A1-206ENST00000465339 KTN1-AS1Q86SY8 53 aa5.48□□□□□ -1.53
COL28A1-206ENST00000465339 CYSTM1Q9H1C7 97 aa5.47□□□□□ -1.53
COL28A1-206ENST00000465339 MT1XP80297 61 aa5.46□□□□□ -1.54
COL28A1-206ENST00000465339 COA5Q86WW8 74 aa5.43□□□□□ -1.54
COL28A1-206ENST00000465339 BRK1Q8WUW1 75 aa5.42□□□□□ -1.54
COL28A1-206ENST00000465339 TMEM258P61165 79 aa5.41□□□□□ -1.54
COL28A1-206ENST00000465339 KRTAP2-2Q9BYT5 123 aa5.41□□□□□ -1.54
COL28A1-206ENST00000465339 H7BZZ5 65 aa5.4□□□□□ -1.54
COL28A1-206ENST00000465339 KRTAP5-9P26371 169 aa5.37□□□□□ -1.55
COL28A1-206ENST00000465339 NEBP20929 6669 aa5.35□□□□□ -1.55
COL28A1-206ENST00000465339 KRTAP12-2P59991 146 aa5.34□□□□□ -1.55
COL28A1-206ENST00000465339 SERP1Q9Y6X1 66 aa5.33□□□□□ -1.56
COL28A1-206ENST00000465339 KRTAP13-4Q3LI77 160 aa5.3□□□□□ -1.56
COL28A1-206ENST00000465339 MUC12Q9UKN1 5478 aa5.26□□□□□ -1.57
COL28A1-206ENST00000465339 KRTAP8-1Q8IUC2 63 aa5.25□□□□□ -1.57
COL28A1-206ENST00000465339 A0A1B0GU33 70 aa5.23□□□□□ -1.57
COL28A1-206ENST00000465339 SPRR2FQ96RM1 72 aa5.22□□□□□ -1.57
COL28A1-206ENST00000465339 MT3P25713 68 aa5.21□□□□□ -1.58
COL28A1-206ENST00000465339 KRTAP10-12P60413 245 aa5.21□□□□□ -1.58
COL28A1-206ENST00000465339 CAMK2N1Q7Z7J9 78 aa5.21□□□□□ -1.58
COL28A1-206ENST00000465339 KRTAP10-7P60409 375 aaPredicted RBP5.2□□□□□ -1.58
COL28A1-206ENST00000465339 KMT2DO14686 5537 aa5.19□□□□□ -1.58
COL28A1-206ENST00000465339 ATP5EP56381 51 aaPredicted RBP5.19□□□□□ -1.58
COL28A1-206ENST00000465339 A0A1B0GU69 56 aa5.18□□□□□ -1.58
COL28A1-206ENST00000465339 KRTAP20-1Q3LI63 56 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms