RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 KRTAP3-3Q9BYR6 98 aa8.55□□□□□ -1.04
USP39-209ENST00000458268 FCGBPQ9Y6R7 5405 aaPredicted RBP8.52□□□□□ -1.05
USP39-209ENST00000458268 NDUFC1O43677 76 aa8.49□□□□□ -1.05
USP39-209ENST00000458268 KRTAP19-6Q3LI70 58 aa8.49□□□□□ -1.05
USP39-209ENST00000458268 A8MUN3 132 aa8.44□□□□□ -1.06
USP39-209ENST00000458268 K7ERU9 68 aa8.44□□□□□ -1.06
USP39-209ENST00000458268 MT-ATP8P03928 68 aa8.43□□□□□ -1.06
USP39-209ENST00000458268 KRTAP9-7A8MTY7 169 aa8.42□□□□□ -1.06
USP39-209ENST00000458268 H3BPC8 53 aa8.4□□□□□ -1.06
USP39-209ENST00000458268 IMUPQ9GZP8 106 aa8.4□□□□□ -1.06
USP39-209ENST00000458268 Q5VV11 94 aa8.38□□□□□ -1.07
USP39-209ENST00000458268 SPRR2GQ9BYE4 73 aa8.35□□□□□ -1.07
USP39-209ENST00000458268 MT1BP07438 61 aa8.32□□□□□ -1.08
USP39-209ENST00000458268 ADM2Q7Z4H4 148 aa8.32□□□□□ -1.08
USP39-209ENST00000458268 KRTAP19-8Q3LI54 63 aa8.28□□□□□ -1.08
USP39-209ENST00000458268 CRIPTQ9P021 101 aa8.28□□□□□ -1.08
USP39-209ENST00000458268 DMAC1Q96GE9 116 aa8.27□□□□□ -1.09
USP39-209ENST00000458268 TRAV7A0A075B6U4 112 aa8.26□□□□□ -1.09
USP39-209ENST00000458268 H0YAA0 97 aa8.26□□□□□ -1.09
USP39-209ENST00000458268 A6NN06 94 aa8.25□□□□□ -1.09
USP39-209ENST00000458268 SMIM20Q8N5G0 67 aa8.25□□□□□ -1.09
USP39-209ENST00000458268 SNURFQ9Y675 71 aa8.17□□□□□ -1.1
USP39-209ENST00000458268 MACF1Q9UPN3 7388 aaKnown RBP8.15□□□□□ -1.1
USP39-209ENST00000458268 ACYP2P14621 99 aa8.13□□□□□ -1.11
USP39-209ENST00000458268 P0C880 135 aa8.12□□□□□ -1.11
USP39-209ENST00000458268 C20orf197Q8N268 126 aa8.1□□□□□ -1.11
USP39-209ENST00000458268 R4GN34 69 aa8.1□□□□□ -1.11
USP39-209ENST00000458268 KRTAP10-5P60370 271 aa8.09□□□□□ -1.11
USP39-209ENST00000458268 CHKB-CPT1BH3BT56 60 aa8.08□□□□□ -1.12
USP39-209ENST00000458268 SYNE2Q8WXH0 6885 aaKnown RBP8.08□□□□□ -1.12
USP39-209ENST00000458268 M0QZ58 72 aa8.07□□□□□ -1.12
USP39-209ENST00000458268 SPTSSBQ8NFR3 76 aa8.03□□□□□ -1.12
USP39-209ENST00000458268 SERP2Q8N6R1 65 aa8.02□□□□□ -1.13
USP39-209ENST00000458268 LINC01554Q52M75 96 aa8.01□□□□□ -1.13
USP39-209ENST00000458268 PLAC4Q8WY50 150 aa8□□□□□ -1.13
USP39-209ENST00000458268 KRTAP6-3Q3LI67 103 aa7.99□□□□□ -1.13
USP39-209ENST00000458268 KRTAP3-2Q9BYR7 98 aa7.99□□□□□ -1.13
USP39-209ENST00000458268 SPANXA2-OT1Q8N9U9 137 aa7.91□□□□□ -1.14
USP39-209ENST00000458268 PRO2289Q9P1D8 64 aa7.89□□□□□ -1.15
USP39-209ENST00000458268 MT1XP80297 61 aa7.83□□□□□ -1.16
USP39-209ENST00000458268 COX7CP15954 63 aa7.81□□□□□ -1.16
USP39-209ENST00000458268 COA5Q86WW8 74 aa7.78□□□□□ -1.16
USP39-209ENST00000458268 CYSTM1Q9H1C7 97 aa7.69□□□□□ -1.18
USP39-209ENST00000458268 ANAPC13Q9BS18 74 aa7.66□□□□□ -1.18
USP39-209ENST00000458268 H7BZZ5 65 aa7.65□□□□□ -1.18
USP39-209ENST00000458268 KRTAP5-9P26371 169 aa7.63□□□□□ -1.19
USP39-209ENST00000458268 KRTAP13-4Q3LI77 160 aa7.63□□□□□ -1.19
USP39-209ENST00000458268 SEC61GP60059 68 aa7.62□□□□□ -1.19
USP39-209ENST00000458268 MUC12Q9UKN1 5478 aa7.61□□□□□ -1.19
USP39-209ENST00000458268 SERP1Q9Y6X1 66 aa7.6□□□□□ -1.19
USP39-209ENST00000458268 KMT2DO14686 5537 aa7.6□□□□□ -1.19
USP39-209ENST00000458268 KRTAP8-1Q8IUC2 63 aa7.59□□□□□ -1.19
USP39-209ENST00000458268 SPRR2FQ96RM1 72 aa7.58□□□□□ -1.2
USP39-209ENST00000458268 KRTAP12-2P59991 146 aa7.56□□□□□ -1.2
USP39-209ENST00000458268 NEBP20929 6669 aa7.56□□□□□ -1.2
USP39-209ENST00000458268 A0A0D9SG42 100 aa7.52□□□□□ -1.21
USP39-209ENST00000458268 KRTAP10-7P60409 375 aaPredicted RBP7.52□□□□□ -1.21
USP39-209ENST00000458268 CAMK2N1Q7Z7J9 78 aa7.51□□□□□ -1.21
USP39-209ENST00000458268 KRTAP4-8A0A0G2JLE6 195 aa7.5□□□□□ -1.21
USP39-209ENST00000458268 CCDC179H3BU77 68 aa7.5□□□□□ -1.21
USP39-209ENST00000458268 KRTAP4-8Q9BYQ9 185 aa7.5□□□□□ -1.21
USP39-209ENST00000458268 SPATA8Q6RVD6 105 aa7.48□□□□□ -1.21
USP39-209ENST00000458268 SPRR2EP22531 72 aa7.45□□□□□ -1.22
USP39-209ENST00000458268 SPRR2BP35325 72 aa7.45□□□□□ -1.22
USP39-209ENST00000458268 SPRR2AP35326 72 aa7.45□□□□□ -1.22
USP39-209ENST00000458268 A0A1B0GU33 70 aa7.44□□□□□ -1.22
USP39-209ENST00000458268 KRTAP20-1Q3LI63 56 aa7.42□□□□□ -1.22
USP39-209ENST00000458268 MDN1Q9NU22 5596 aa7.42□□□□□ -1.22
USP39-209ENST00000458268 KRTAP10-12P60413 245 aa7.4□□□□□ -1.22
USP39-209ENST00000458268 A0A1B0GU69 56 aa7.39□□□□□ -1.23
USP39-209ENST00000458268 SPINT4Q6UDR6 99 aa7.39□□□□□ -1.23
USP39-209ENST00000458268 ATP5EP56381 51 aaPredicted RBP7.3□□□□□ -1.24
USP39-209ENST00000458268 LCE1AQ5T7P2 110 aa7.28□□□□□ -1.24
USP39-209ENST00000458268 SMIM26A0A096LP01 95 aa7.24□□□□□ -1.25
USP39-209ENST00000458268 KRTAP12-1P59990 96 aa7.24□□□□□ -1.25
USP39-209ENST00000458268 A8MU10 97 aa7.23□□□□□ -1.25
USP39-209ENST00000458268 KRTAP2-3P0C7H8 128 aa7.21□□□□□ -1.26
USP39-209ENST00000458268 KRTAP2-4Q9BYR9 128 aa7.21□□□□□ -1.26
USP39-209ENST00000458268 SPRR2DP22532 72 aa7.2□□□□□ -1.26
USP39-209ENST00000458268 PRR15LQ9BU68 103 aa7.2□□□□□ -1.26
USP39-209ENST00000458268 TMEM258P61165 79 aa7.16□□□□□ -1.26
USP39-209ENST00000458268 LINC01558Q9Y6Z2 57 aa7.09□□□□□ -1.27
USP39-209ENST00000458268 KRTAP19-7Q3SYF9 63 aa6.98□□□□□ -1.29
USP39-209ENST00000458268 KRTAP2-2Q9BYT5 123 aa6.98□□□□□ -1.29
USP39-209ENST00000458268 KRTAP2-1Q9BYU5 128 aa6.98□□□□□ -1.29
USP39-209ENST00000458268 LCE3BQ5TA77 95 aa6.97□□□□□ -1.29
USP39-209ENST00000458268 MT1EP04732 61 aa6.94□□□□□ -1.3
USP39-209ENST00000458268 UQCR11O14957 56 aa6.93□□□□□ -1.3
USP39-209ENST00000458268 C10orf95Q9H7T3 257 aa6.92□□□□□ -1.3
USP39-209ENST00000458268 KRTAP19-5Q3LI72 72 aa6.91□□□□□ -1.3
USP39-209ENST00000458268 TNP1P09430 55 aa6.9□□□□□ -1.3
USP39-209ENST00000458268 KRTAP19-3Q7Z4W3 81 aa6.85□□□□□ -1.31
USP39-209ENST00000458268 LCE3AQ5TA76 89 aa6.83□□□□□ -1.32
USP39-209ENST00000458268 MIR22HGQ0VDD5 57 aa6.82□□□□□ -1.32
USP39-209ENST00000458268 PSPHP1O15172 72 aa6.81□□□□□ -1.32
USP39-209ENST00000458268 LCE5AQ5TCM9 118 aa6.81□□□□□ -1.32
USP39-209ENST00000458268 V9GYY9 64 aa6.75□□□□□ -1.33
USP39-209ENST00000458268 K7ERS5 55 aa6.69□□□□□ -1.34
USP39-209ENST00000458268 MT1GP13640 62 aa6.68□□□□□ -1.34
USP39-209ENST00000458268 Q1T7F1 81 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 224.6 ms