RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 ANAPC13Q9BS18 74 aa7.02□□□□□ -1.29
CHD3-205ENST00000449744 LCA10Q71F78 164 aa7□□□□□ -1.29
CHD3-205ENST00000449744 SMIM20Q8N5G0 67 aa7□□□□□ -1.29
CHD3-205ENST00000449744 PCP4P48539 62 aa6.96□□□□□ -1.3
CHD3-205ENST00000449744 CYP4F30PQ9H0H9 118 aa6.96□□□□□ -1.3
CHD3-205ENST00000449744 TRAV22A0A0B4J277 110 aa6.95□□□□□ -1.3
CHD3-205ENST00000449744 LOC101927531A0A1B0GV80 90 aa6.94□□□□□ -1.3
CHD3-205ENST00000449744 KRTAP6-3Q3LI67 103 aa6.94□□□□□ -1.3
CHD3-205ENST00000449744 TRAV7A0A075B6U4 112 aa6.91□□□□□ -1.3
CHD3-205ENST00000449744 SERP2Q8N6R1 65 aa6.91□□□□□ -1.3
CHD3-205ENST00000449744 Q5VV11 94 aa6.89□□□□□ -1.31
CHD3-205ENST00000449744 UQCRQO14949 82 aa6.87□□□□□ -1.31
CHD3-205ENST00000449744 KLKP1Q107X0 134 aa6.87□□□□□ -1.31
CHD3-205ENST00000449744 SPRR2GQ9BYE4 73 aa6.87□□□□□ -1.31
CHD3-205ENST00000449744 COX7CP15954 63 aa6.86□□□□□ -1.31
CHD3-205ENST00000449744 H0Y9P7 68 aa6.85□□□□□ -1.31
CHD3-205ENST00000449744 A6NN06 94 aa6.84□□□□□ -1.31
CHD3-205ENST00000449744 MT1BP07438 61 aa6.84□□□□□ -1.31
CHD3-205ENST00000449744 KRTAP19-8Q3LI54 63 aa6.83□□□□□ -1.32
CHD3-205ENST00000449744 OCR1Q9BZK8 76 aa6.83□□□□□ -1.32
CHD3-205ENST00000449744 MP68P56378 58 aa6.81□□□□□ -1.32
CHD3-205ENST00000449744 NDUFC1O43677 76 aa6.78□□□□□ -1.32
CHD3-205ENST00000449744 CRIPTQ9P021 101 aa6.78□□□□□ -1.32
CHD3-205ENST00000449744 CCDC179H3BU77 68 aa6.77□□□□□ -1.33
CHD3-205ENST00000449744 C20orf197Q8N268 126 aa6.77□□□□□ -1.33
CHD3-205ENST00000449744 H3BPC8 53 aa6.74□□□□□ -1.33
CHD3-205ENST00000449744 LINC00208Q96KT6 92 aa6.74□□□□□ -1.33
CHD3-205ENST00000449744 A8MUN3 132 aa6.73□□□□□ -1.33
CHD3-205ENST00000449744 KRTAP10-5P60370 271 aa6.71□□□□□ -1.34
CHD3-205ENST00000449744 H0YAA0 97 aa6.7□□□□□ -1.34
CHD3-205ENST00000449744 SNURFQ9Y675 71 aa6.7□□□□□ -1.34
CHD3-205ENST00000449744 NEBP20929 6669 aa6.7□□□□□ -1.34
CHD3-205ENST00000449744 ADM2Q7Z4H4 148 aa6.65□□□□□ -1.34
CHD3-205ENST00000449744 TMEM258P61165 79 aa6.61□□□□□ -1.35
CHD3-205ENST00000449744 MUC12Q9UKN1 5478 aa6.61□□□□□ -1.35
CHD3-205ENST00000449744 KRTAP20-1Q3LI63 56 aa6.6□□□□□ -1.35
CHD3-205ENST00000449744 LOC100996750A0A140TA64 210 aa6.59□□□□□ -1.35
CHD3-205ENST00000449744 KRTAP4-6Q9BYQ5 205 aa6.59□□□□□ -1.35
CHD3-205ENST00000449744 ATP5EP56381 51 aaPredicted RBP6.58□□□□□ -1.36
CHD3-205ENST00000449744 H7BZZ5 65 aa6.57□□□□□ -1.36
CHD3-205ENST00000449744 CYSTM1Q9H1C7 97 aa6.57□□□□□ -1.36
CHD3-205ENST00000449744 SPANXA2-OT1Q8N9U9 137 aa6.51□□□□□ -1.37
CHD3-205ENST00000449744 DMAC1Q96GE9 116 aa6.51□□□□□ -1.37
CHD3-205ENST00000449744 PLAC4Q8WY50 150 aa6.5□□□□□ -1.37
CHD3-205ENST00000449744 R4GN34 69 aa6.5□□□□□ -1.37
CHD3-205ENST00000449744 PRO2289Q9P1D8 64 aa6.49□□□□□ -1.37
CHD3-205ENST00000449744 KRTAP5-9P26371 169 aa6.47□□□□□ -1.37
CHD3-205ENST00000449744 P0C880 135 aa6.45□□□□□ -1.38
CHD3-205ENST00000449744 M0QZ58 72 aa6.44□□□□□ -1.38
CHD3-205ENST00000449744 KMT2DO14686 5537 aa6.42□□□□□ -1.38
CHD3-205ENST00000449744 SERP1Q9Y6X1 66 aa6.41□□□□□ -1.38
CHD3-205ENST00000449744 MT1XP80297 61 aa6.4□□□□□ -1.38
CHD3-205ENST00000449744 MDN1Q9NU22 5596 aa6.38□□□□□ -1.39
CHD3-205ENST00000449744 ACYP2P14621 99 aa6.37□□□□□ -1.39
CHD3-205ENST00000449744 LINC01554Q52M75 96 aa6.36□□□□□ -1.39
CHD3-205ENST00000449744 KRTAP2-3P0C7H8 128 aa6.34□□□□□ -1.39
CHD3-205ENST00000449744 RPS28P62857 69 aaKnown RBP6.34□□□□□ -1.39
CHD3-205ENST00000449744 KRTAP2-4Q9BYR9 128 aa6.34□□□□□ -1.39
CHD3-205ENST00000449744 CHKB-CPT1BH3BT56 60 aa6.33□□□□□ -1.4
CHD3-205ENST00000449744 SPTSSBQ8NFR3 76 aa6.33□□□□□ -1.4
CHD3-205ENST00000449744 SPRR2FQ96RM1 72 aa6.31□□□□□ -1.4
CHD3-205ENST00000449744 COA5Q86WW8 74 aa6.3□□□□□ -1.4
CHD3-205ENST00000449744 KRTAP8-1Q8IUC2 63 aa6.28□□□□□ -1.4
CHD3-205ENST00000449744 SPRR2EP22531 72 aa6.27□□□□□ -1.41
CHD3-205ENST00000449744 SPRR2BP35325 72 aa6.27□□□□□ -1.41
CHD3-205ENST00000449744 SPRR2AP35326 72 aa6.27□□□□□ -1.41
CHD3-205ENST00000449744 KRTAP12-2P59991 146 aa6.27□□□□□ -1.41
CHD3-205ENST00000449744 SMIM26A0A096LP01 95 aa6.23□□□□□ -1.41
CHD3-205ENST00000449744 V9GYY9 64 aa6.17□□□□□ -1.42
CHD3-205ENST00000449744 KRTAP4-8A0A0G2JLE6 195 aa6.15□□□□□ -1.42
CHD3-205ENST00000449744 KRTAP4-8Q9BYQ9 185 aa6.15□□□□□ -1.42
CHD3-205ENST00000449744 KRTAP10-7P60409 375 aaPredicted RBP6.12□□□□□ -1.43
CHD3-205ENST00000449744 KRTAP2-2Q9BYT5 123 aa6.12□□□□□ -1.43
CHD3-205ENST00000449744 KRTAP2-1Q9BYU5 128 aa6.12□□□□□ -1.43
CHD3-205ENST00000449744 LCE1AQ5T7P2 110 aa6.1□□□□□ -1.43
CHD3-205ENST00000449744 KRTAP10-12P60413 245 aa6.08□□□□□ -1.44
CHD3-205ENST00000449744 Q1T7F1 81 aa6.08□□□□□ -1.44
CHD3-205ENST00000449744 PRR15LQ9BU68 103 aa6.07□□□□□ -1.44
CHD3-205ENST00000449744 SPRR2DP22532 72 aa6.06□□□□□ -1.44
CHD3-205ENST00000449744 SEC61GP60059 68 aa6.06□□□□□ -1.44
CHD3-205ENST00000449744 LINC01558Q9Y6Z2 57 aa6.03□□□□□ -1.44
CHD3-205ENST00000449744 A0A1B0GU69 56 aa6.02□□□□□ -1.45
CHD3-205ENST00000449744 KRTAP13-4Q3LI77 160 aa6□□□□□ -1.45
CHD3-205ENST00000449744 CAMK2N1Q7Z7J9 78 aa5.99□□□□□ -1.45
CHD3-205ENST00000449744 PSPHP1O15172 72 aa5.98□□□□□ -1.45
CHD3-205ENST00000449744 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
CHD3-205ENST00000449744 A0A0D9SG42 100 aa5.86□□□□□ -1.47
CHD3-205ENST00000449744 A6NED7 52 aa5.86□□□□□ -1.47
CHD3-205ENST00000449744 UQCR11O14957 56 aa5.83□□□□□ -1.48
CHD3-205ENST00000449744 A0A1B0GU33 70 aa5.82□□□□□ -1.48
CHD3-205ENST00000449744 SPATA8Q6RVD6 105 aa5.82□□□□□ -1.48
CHD3-205ENST00000449744 SPINT4Q6UDR6 99 aa5.8□□□□□ -1.48
CHD3-205ENST00000449744 BRK1Q8WUW1 75 aa5.77□□□□□ -1.49
CHD3-205ENST00000449744 MIR22HGQ0VDD5 57 aa5.75□□□□□ -1.49
CHD3-205ENST00000449744 KRTAP4-12Q9BQ66 201 aa5.74□□□□□ -1.49
CHD3-205ENST00000449744 KRTAP19-7Q3SYF9 63 aa5.72□□□□□ -1.49
CHD3-205ENST00000449744 KRTAP12-1P59990 96 aa5.71□□□□□ -1.5
CHD3-205ENST00000449744 CDC42SE1Q9NRR8 79 aa5.71□□□□□ -1.5
CHD3-205ENST00000449744 MT1EP04732 61 aa5.68□□□□□ -1.5
CHD3-205ENST00000449744 KRTAP19-3Q7Z4W3 81 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms