RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 TNXBP22105 4242 aa7.75□□□□□ -1.17
LIMD1-202ENST00000440097 ABCA13Q86UQ4 5058 aa7.74□□□□□ -1.17
LIMD1-202ENST00000440097 A0A0A0MQY5 61 aa7.73□□□□□ -1.17
LIMD1-202ENST00000440097 KRTAP10-8P60410 259 aa7.71□□□□□ -1.18
LIMD1-202ENST00000440097 HERC2O95714 4834 aa7.68□□□□□ -1.18
LIMD1-202ENST00000440097 C20orf166-AS1Q96NR2 134 aa7.65□□□□□ -1.18
LIMD1-202ENST00000440097 A8MUU9 505 aa7.65□□□□□ -1.19
LIMD1-202ENST00000440097 BIRC6Q9NR09 4857 aa7.62□□□□□ -1.19
LIMD1-202ENST00000440097 H0YAA0 97 aa7.59□□□□□ -1.2
LIMD1-202ENST00000440097 MT1HL1P0DM35 61 aa7.55□□□□□ -1.2
LIMD1-202ENST00000440097 LPAP08519 4548 aa7.54□□□□□ -1.2
LIMD1-202ENST00000440097 PCLOQ9Y6V0 5065 aa7.54□□□□□ -1.2
LIMD1-202ENST00000440097 HERC1Q15751 4861 aa7.51□□□□□ -1.21
LIMD1-202ENST00000440097 KRTAP25-1Q3LHN0 102 aa7.51□□□□□ -1.21
LIMD1-202ENST00000440097 A0A1B0GU33 70 aa7.48□□□□□ -1.21
LIMD1-202ENST00000440097 XP32Q5T750 250 aa7.47□□□□□ -1.21
LIMD1-202ENST00000440097 LRP2P98164 4655 aa7.45□□□□□ -1.22
LIMD1-202ENST00000440097 RPL37P61927 97 aaKnown RBP7.44□□□□□ -1.22
LIMD1-202ENST00000440097 H1FX-AS1Q4G0G2 97 aa7.44□□□□□ -1.22
LIMD1-202ENST00000440097 KRTAP3-1Q9BYR8 98 aa7.42□□□□□ -1.22
LIMD1-202ENST00000440097 ROMO1P60602 79 aa7.41□□□□□ -1.22
LIMD1-202ENST00000440097 J3QL48 77 aa7.41□□□□□ -1.22
LIMD1-202ENST00000440097 CRIPTQ9P021 101 aa7.39□□□□□ -1.23
LIMD1-202ENST00000440097 COX6B2Q6YFQ2 88 aa7.34□□□□□ -1.23
LIMD1-202ENST00000440097 MUC2Q02817 5179 aa7.33□□□□□ -1.24
LIMD1-202ENST00000440097 TPRXLQ17RH7 258 aa7.31□□□□□ -1.24
LIMD1-202ENST00000440097 K7ERS5 55 aa7.31□□□□□ -1.24
LIMD1-202ENST00000440097 P0C880 135 aa7.23□□□□□ -1.25
LIMD1-202ENST00000440097 RNF213Q63HN8 5207 aa7.15□□□□□ -1.27
LIMD1-202ENST00000440097 S4R3F8 94 aa7.14□□□□□ -1.27
LIMD1-202ENST00000440097 UBR4Q5T4S7 5183 aa7.14□□□□□ -1.27
LIMD1-202ENST00000440097 A0A0D9SG42 100 aa7.13□□□□□ -1.27
LIMD1-202ENST00000440097 KRTAP13-4Q3LI77 160 aa7.13□□□□□ -1.27
LIMD1-202ENST00000440097 KRTAP10-6P60371 365 aaPredicted RBP7.12□□□□□ -1.27
LIMD1-202ENST00000440097 SEC61BP60468 96 aaKnown RBP7.1□□□□□ -1.27
LIMD1-202ENST00000440097 SPINT4Q6UDR6 99 aa7.09□□□□□ -1.27
LIMD1-202ENST00000440097 KRTAP3-3Q9BYR6 98 aa7.08□□□□□ -1.28
LIMD1-202ENST00000440097 HMCN2Q8NDA2 5059 aa7.08□□□□□ -1.28
LIMD1-202ENST00000440097 C10orf95Q9H7T3 257 aa7.05□□□□□ -1.28
LIMD1-202ENST00000440097 KRTAP3-2Q9BYR7 98 aa7.04□□□□□ -1.28
LIMD1-202ENST00000440097 FAT4Q6V0I7 4981 aa6.98□□□□□ -1.29
LIMD1-202ENST00000440097 MUC17Q685J3 4493 aa6.97□□□□□ -1.29
LIMD1-202ENST00000440097 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
LIMD1-202ENST00000440097 KRTAP12-2P59991 146 aa6.92□□□□□ -1.3
LIMD1-202ENST00000440097 KRTAP4-1Q9BYQ7 146 aa6.92□□□□□ -1.3
LIMD1-202ENST00000440097 NDUFAF8A1L188 74 aa6.92□□□□□ -1.3
LIMD1-202ENST00000440097 KRTAP12-1P59990 96 aa6.83□□□□□ -1.32
LIMD1-202ENST00000440097 KRTAP19-2Q3LHN2 52 aa6.7□□□□□ -1.34
LIMD1-202ENST00000440097 M0QZ58 72 aa6.66□□□□□ -1.34
LIMD1-202ENST00000440097 LUZP6Q538Z0 58 aa6.65□□□□□ -1.34
LIMD1-202ENST00000440097 R4GN34 69 aa6.65□□□□□ -1.34
LIMD1-202ENST00000440097 LORP23490 312 aaPredicted RBP6.58□□□□□ -1.36
LIMD1-202ENST00000440097 FLGP20930 4061 aaPredicted RBP6.57□□□□□ -1.36
LIMD1-202ENST00000440097 M0R2T5 61 aa6.5□□□□□ -1.37
LIMD1-202ENST00000440097 PLAC4Q8WY50 150 aa6.48□□□□□ -1.37
LIMD1-202ENST00000440097 LCE2CQ5TA81 110 aa6.46□□□□□ -1.38
LIMD1-202ENST00000440097 MT1HP80294 61 aa6.36□□□□□ -1.39
LIMD1-202ENST00000440097 CAMK2N1Q7Z7J9 78 aa6.3□□□□□ -1.4
LIMD1-202ENST00000440097 FSIP2Q5CZC0 6907 aa6.27□□□□□ -1.41
LIMD1-202ENST00000440097 KRTAP10-10P60014 251 aa6.23□□□□□ -1.41
LIMD1-202ENST00000440097 PP632Q6XCG6 107 aa6.22□□□□□ -1.41
LIMD1-202ENST00000440097 USH2AO75445 5202 aa6.2□□□□□ -1.42
LIMD1-202ENST00000440097 MT2AP02795 61 aa6.17□□□□□ -1.42
LIMD1-202ENST00000440097 MT1FP04733 61 aa6.16□□□□□ -1.42
LIMD1-202ENST00000440097 SPRR2GQ9BYE4 73 aa6.13□□□□□ -1.43
LIMD1-202ENST00000440097 KRTAP9-8Q9BYQ0 159 aa6.13□□□□□ -1.43
LIMD1-202ENST00000440097 KRTAP19-1Q8IUB9 90 aa6.12□□□□□ -1.43
LIMD1-202ENST00000440097 TNP1P09430 55 aa5.98□□□□□ -1.45
LIMD1-202ENST00000440097 SPRR5A0A1B0GTR4 108 aa5.95□□□□□ -1.46
LIMD1-202ENST00000440097 LCE2AQ5TA79 106 aaPredicted RBP5.93□□□□□ -1.46
LIMD1-202ENST00000440097 KRTAP23-1A1A580 65 aa5.91□□□□□ -1.46
LIMD1-202ENST00000440097 KRTAP19-8Q3LI54 63 aa5.89□□□□□ -1.47
LIMD1-202ENST00000440097 KRTAP9-3Q9BYQ3 159 aa5.89□□□□□ -1.47
LIMD1-202ENST00000440097 MT1BP07438 61 aa5.85□□□□□ -1.47
LIMD1-202ENST00000440097 KMT2DO14686 5537 aa5.75□□□□□ -1.49
LIMD1-202ENST00000440097 LCE2BO14633 110 aa5.74□□□□□ -1.49
LIMD1-202ENST00000440097 MT1XP80297 61 aa5.74□□□□□ -1.49
LIMD1-202ENST00000440097 KRTAP10-5P60370 271 aa5.73□□□□□ -1.49
LIMD1-202ENST00000440097 SSPOA2VEC9 5147 aa5.7□□□□□ -1.5
LIMD1-202ENST00000440097 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
LIMD1-202ENST00000440097 LCE3AQ5TA76 89 aa5.66□□□□□ -1.5
LIMD1-202ENST00000440097 KRTAP10-12P60413 245 aa5.58□□□□□ -1.52
LIMD1-202ENST00000440097 KRTAP10-7P60409 375 aaPredicted RBP5.57□□□□□ -1.52
LIMD1-202ENST00000440097 INE1O15225 51 aa5.48□□□□□ -1.53
LIMD1-202ENST00000440097 LCE2DQ5TA82 110 aaPredicted RBP5.47□□□□□ -1.53
LIMD1-202ENST00000440097 KRTAP8-1Q8IUC2 63 aa5.47□□□□□ -1.53
LIMD1-202ENST00000440097 KRTAP12-3P60328 96 aa5.42□□□□□ -1.54
LIMD1-202ENST00000440097 FCGBPQ9Y6R7 5405 aaPredicted RBP5.4□□□□□ -1.54
LIMD1-202ENST00000440097 SYNE2Q8WXH0 6885 aaKnown RBP5.37□□□□□ -1.55
LIMD1-202ENST00000440097 KRTAP9-2Q9BYQ4 174 aa5.36□□□□□ -1.55
LIMD1-202ENST00000440097 MACF1Q9UPN3 7388 aaKnown RBP5.35□□□□□ -1.55
LIMD1-202ENST00000440097 KRTAP4-8A0A0G2JLE6 195 aa5.33□□□□□ -1.56
LIMD1-202ENST00000440097 KRTAP4-8Q9BYQ9 185 aa5.33□□□□□ -1.56
LIMD1-202ENST00000440097 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
LIMD1-202ENST00000440097 MUC12Q9UKN1 5478 aa5.23□□□□□ -1.57
LIMD1-202ENST00000440097 KRTAP19-6Q3LI70 58 aa5.23□□□□□ -1.57
LIMD1-202ENST00000440097 CRCT1Q9UGL9 99 aa5.12□□□□□ -1.59
LIMD1-202ENST00000440097 DSTQ03001 7570 aaKnown RBP5.12□□□□□ -1.59
LIMD1-202ENST00000440097 KRTAP19-7Q3SYF9 63 aa5.1□□□□□ -1.59
LIMD1-202ENST00000440097 LCE3CQ5T5A8 94 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms